MELO3C017641 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017641
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Zinc finger CCCH domain-containing protein 54
Location	chr7 : 23678983 .. 23679633 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGCCACGAATTCTCCGCCGTGTCACTGCCGGAAGTCACGGTCGGTAACTTAACGGAAAAAGTAGACGACACGGCGGTGTTCAGCACCGACGAGTTTCGGATGTACTCTTACAAGATCCAACGGTGCCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGATCGGGGAGCTGTCCGAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTCCGGCCTGAAACCAAACACAAGTTTAATTTGAATGCTCAACGGCAGCGTGTGGCGGTGGCTGCCGTTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCCGCGAGGGAGAACGGCGGTGGACGGAAAAATGAACGGAGTTTTGGATTTGATGTGTCGGAATTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGAAGTAA

mRNA sequence

ATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGCCACGAATTCTCCGCCGTGTCACTGCCGGAAGTCACGGTCGGTAACTTAACGGAAAAAGTAGACGACACGGCGGTGTTCAGCACCGACGAGTTTCGGATGTACTCTTACAAGATCCAACGGTGCCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGATCGGGGAGCTGTCCGAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTCCGGCCTGAAACCAAACACAAGTTTAATTTGAATGCTCAACGGCAGCGTGTGGCGGTGGCTGCCGTTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCCGCGAGGGAGAACGGCGGTGGACGGAAAAATGAACGGAGTTTTGGATTTGATGTGTCGGAATTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGAAGTAA

Coding sequence (CDS)

ATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGCCACGAATTCTCCGCCGTGTCACTGCCGGAAGTCACGGTCGGTAACTTAACGGAAAAAGTAGACGACACGGCGGTGTTCAGCACCGACGAGTTTCGGATGTACTCTTACAAGATCCAACGGTGCCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGATCGGGGAGCTGTCCGAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTCCGGCCTGAAACCAAACACAAGTTTAATTTGAATGCTCAACGGCAGCGTGTGGCGGTGGCTGCCGTTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCCGCGAGGGAGAACGGCGGTGGACGGAAAAATGAACGGAGTTTTGGATTTGATGTGTCGGAATTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGAAGTAA

Protein sequence

MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK*

Homology

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BLAST of MELO3C017641 vs. Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.2e-55
Identity = 111/208 (53.37%), Postives = 129/208 (62.02%), Query Frame = 1


Query: 36  DTAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ +DEFRMY+YKI+RCPR RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR+
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR-PETKHKFN 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR  E KH   
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKH--- 163

Query: 156 LNAQRQRVAVAAVESPPEEKNDGI-LEIPARENGGGRKNERSFGFDVS------------ 215
               R R A   V +      DG+ + +        R   RS   D+             
Sbjct: 164 ----RCRYAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKCWS 223

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BLAST of MELO3C017641 vs. Swiss-Prot
Match: C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-44
Identity = 87/168 (51.79%), Postives = 108/168 (64.29%), Query Frame = 1


Query: 37  TAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSG 96
           T  FS+DEFR+Y +KI+RC R RSHDWTECP+AH GEKA+RRDPR+F+Y+  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 97  SCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR-------PET 156
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR       P+ 
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLPCSLDPDL 202

Query: 157 KHKFNLNAQRQRVAVAAVESPPEEK-----NDGILEIPARE---NGGG 190
                L      + V+   SPP E      + G L    R+   NGGG
Sbjct: 203 GFFSGLATSPTSILVSPSFSPPSESPPLSPSTGELIASMRKMQLNGGG 250

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BLAST of MELO3C017641 vs. Swiss-Prot
Match: C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.0e-44
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 40  FSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCP 99
           +S D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

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BLAST of MELO3C017641 vs. Swiss-Prot
Match: C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.8e-44
Identity = 80/141 (56.74%), Postives = 95/141 (67.38%), Query Frame = 1


Query: 40  FSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCP 99
           ++ DEFRMY +K++RC R RSHDWTECP+AH GEKA+RRDPRR+ Y+  ACP FR G C 
Sbjct: 73  YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCK 132

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR---PETKHKFNLN 159
           +GD CEFAHGVFE WLHPARYRT+ C  G  C+R+VCFFAH+P++LR   P  +   N  
Sbjct: 133 RGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSP 192

Query: 160 AQRQRVAVAAVESPPEEKNDG 178
                    A  SP  E  DG
Sbjct: 193 RGCGGGGAGAAASPLAESYDG 213

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BLAST of MELO3C017641 vs. Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.9e-44
Identity = 78/127 (61.42%), Postives = 94/127 (74.02%), Query Frame = 1


Query: 21  SLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDP 80
           SLP++  G          ++STDEFRM+S+KI+ C R  SHDWTECP+AH GE A+RRDP
Sbjct: 244 SLPDIKSG----------IYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDP 303

Query: 81  RRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH 140
           R+F+YT V CP F+ GSC +GD CE+AHGVFE WLHPA+YRTR C  G  C R+VCFFAH
Sbjct: 304 RKFHYTCVPCPDFKKGSCKQGDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAH 360

Query: 141 SPEELRP 148
           + EELRP
Sbjct: 364 ANEELRP 360

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BLAST of MELO3C017641 vs. TrEMBL
Match: T1SFR9_CARPA (PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.8e-58
Identity = 110/199 (55.28%), Postives = 141/199 (70.85%), Query Frame = 1


Query: 36  DTAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ +DEFRM++YKI+RCPR RSHDWTECPYAHRGEKAQRRDPR+ +Y AVACPAFR+
Sbjct: 50  DEAIYGSDEFRMFAYKIKRCPRMRSHDWTECPYAHRGEKAQRRDPRKLSYCAVACPAFRN 109

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNL 155
           G C +G+ C+FAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+P++LR ETK+K  +
Sbjct: 110 GRCYRGETCDFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPQQLRSETKYKCQV 169

Query: 156 NAQRQRVAVAAVESPPEE-----------KNDGILEIPARE--------NGGGRKNERSF 215
             + +      V   P +           +  G +++P +E        +  G K +   
Sbjct: 170 TYRGRMYGGDEVIRRPVQVGSSQGRMLMSRAPGPVKMPMKEEVPGDFLRSLSGLKIKEKG 229

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BLAST of MELO3C017641 vs. TrEMBL
Match: W9SQQ1_9ROSA (Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 102/152 (67.11%), Postives = 119/152 (78.29%), Query Frame = 1


Query: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60
           M +G    + D   H +    L   T   L ++  + A++ +DEFRMY+YKI+RCPR RS
Sbjct: 1   MLKGINPTVYDFSDHHY----LSAATAAELNDRAVNEAIYGSDEFRMYAYKIKRCPRMRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+ NY A+ CPAFR+G C KGD CEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRKHNYAAIVCPAFRNGGCEKGDACEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHK 153
           RTRACN+G+FCQRKVCFFAHSPE+LRPETK K
Sbjct: 121 RTRACNSGQFCQRKVCFFAHSPEQLRPETKLK 148

[Close]

BLAST of MELO3C017641 vs. TrEMBL
Match: W9SQQ1_9ROSA (Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 PE=4 SV=1)

HSP 1 Score: 34.3 bits (77), Expect = 2.3e+02
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 1


Query: 190 RKNERSFGFDVSELELPHIEWISELLK 217
           R    S   DVSE +LPH+EWISEL++
Sbjct: 249 RSTSSSGLMDVSESDLPHVEWISELVQ 275

HSP 2 Score: 226.1 bits (575), Expect = 4.1e-56
Identity = 107/181 (59.12%), Postives = 129/181 (71.27%), Query Frame = 1


Query: 38  AVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGS 97
           A++ +DEFRMY+YKI+RC R RSHDWTECPYAHRGEKA RRDPR+  Y A+ACP FR+G 
Sbjct: 37  AIYGSDEFRMYAYKIKRCTRTRSHDWTECPYAHRGEKATRRDPRKVPYVAIACPGFRNGK 96

Query: 98  CPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNA 157
           C KGD CE+AHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+PE+LR E K+      
Sbjct: 97  CHKGDTCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSEKKYACPF-V 156

Query: 158 QRQRVAVAAVESPPEE--KNDGILEIPARENGGGRKNERSFGFDVSELELPHIEWISELL 217
            R R+   + E       + D +L      N    + +   G + SE EL H++WISEL+
Sbjct: 157 YRARMNGGSEEGSTSSGIRMDELLNSLRNWNIVDEEKKGGGGIEESEGELAHLDWISELV 216

[Close]

BLAST of MELO3C017641 vs. TrEMBL
Match: Q6V5F9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002521mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.0e-54
Identity = 112/210 (53.33%), Postives = 133/210 (63.33%), Query Frame = 1


Query: 36  DTAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ +DEFRMY+YKI+RCPR RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR+
Sbjct: 46  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 105

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR-PETKHKFN 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR  E KH   
Sbjct: 106 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKH--- 165

Query: 156 LNAQRQRVAVAAVESPPEEKNDGILEIPARENGGGR---KNERSFGFDVSE--------- 215
               R R A   V +     N   + +   +    R   K+ +S G D +E         
Sbjct: 166 ----RCRYAYRPVRARGGNSNGVAMRMDGEDYDTSRSPEKSGKSVGLDSNEEKVLLKCWS 225

[Close]

BLAST of MELO3C017641 vs. TrEMBL
Match: Q6V5E1_OLIPU (Zn-finger transcription factor OS=Olimarabidopsis pumila GN=Op_7500 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.0e-54
Identity = 112/202 (55.45%), Postives = 137/202 (67.82%), Query Frame = 1


Query: 36  DTAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ +DEFRMY+YKI+RCPR RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR+
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR-PETKHKF- 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR  E KH+  
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCR 163

Query: 156 -----------NLNAQRQRVAVAAVES--PPEEKNDGILEIPARE---NGGGRKNERSFG 215
                      N +A   R+     ++   PE+   G L+    +       R N     
Sbjct: 164 YAYRPVRTRGGNSDAMAVRMEGEDYDTSRSPEKSGKGGLDSNEEKVLFKCWSRMNIVDDH 223

[Close]

BLAST of MELO3C017641 vs. TAIR10
Match: AT5G07500.1 (AT5G07500.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-56
Identity = 111/208 (53.37%), Postives = 129/208 (62.02%), Query Frame = 1


Query: 36  DTAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ +DEFRMY+YKI+RCPR RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR+
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR-PETKHKFN 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR  E KH   
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKH--- 163

Query: 156 LNAQRQRVAVAAVESPPEEKNDGI-LEIPARENGGGRKNERSFGFDVS------------ 215
               R R A   V +      DG+ + +        R   RS   D+             
Sbjct: 164 ----RCRYAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKCWS 223

[Close]

BLAST of MELO3C017641 vs. TAIR10
Match: AT2G25900.1 (AT2G25900.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-45
Identity = 87/168 (51.79%), Postives = 108/168 (64.29%), Query Frame = 1


Query: 37  TAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSG 96
           T  FS+DEFR+Y +KI+RC R RSHDWTECP+AH GEKA+RRDPR+F+Y+  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 97  SCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR-------PET 156
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR       P+ 
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLPCSLDPDL 202

Query: 157 KHKFNLNAQRQRVAVAAVESPPEEK-----NDGILEIPARE---NGGG 190
                L      + V+   SPP E      + G L    R+   NGGG
Sbjct: 203 GFFSGLATSPTSILVSPSFSPPSESPPLSPSTGELIASMRKMQLNGGG 250

[Close]

BLAST of MELO3C017641 vs. TAIR10
Match: AT4G29190.1 (AT4G29190.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.7e-45
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 40  FSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCP 99
           +S D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

[Close]

BLAST of MELO3C017641 vs. TAIR10
Match: AT5G12850.1 (AT5G12850.1 CCCH-type zinc finger protein with ARM repeat domain)

HSP 1 Score: 178.3 bits (451), Expect = 5.0e-45
Identity = 78/127 (61.42%), Postives = 94/127 (74.02%), Query Frame = 1


Query: 21  SLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDP 80
           SLP++  G          ++STDEFRM+S+KI+ C R  SHDWTECP+AH GE A+RRDP
Sbjct: 244 SLPDIKSG----------IYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDP 303

Query: 81  RRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH 140
           R+F+YT V CP F+ GSC +GD CE+AHGVFE WLHPA+YRTR C  G  C R+VCFFAH
Sbjct: 304 RKFHYTCVPCPDFKKGSCKQGDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAH 360

Query: 141 SPEELRP 148
           + EELRP
Sbjct: 364 ANEELRP 360

[Close]

BLAST of MELO3C017641 vs. TAIR10
Match: AT2G41900.1 (AT2G41900.1 CCCH-type zinc finger protein with ARM repeat domain)

HSP 1 Score: 177.9 bits (450), Expect = 6.5e-45
Identity = 72/110 (65.45%), Postives = 89/110 (80.91%), Query Frame = 1


Query: 38  AVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGS 97
           ++++TDEFRMYS+K++ C R  SHDWTECP+ H GE A+RRDPR+F+Y+ V CP FR G+
Sbjct: 255 SIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA 314

Query: 98  CPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRP 148
           C +GD CE+AHGVFE WLHPA+YRTR C  G  C R+VCFFAH+PEELRP
Sbjct: 315 CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRP 364

[Close]

BLAST of MELO3C017641 vs. NCBI nr
Match: gi|659108959|ref|XP_008454474.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo])

HSP 1 Score: 461.1 bits (1185), Expect = 1.1e-126
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1


Query: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180

Query: 181 IPARENGGGRKNERSFGFDVSELELPHIEWISELLK 217
           IPARENGGGRKNERSFGFDVSELELPHIEWISELLK
Sbjct: 181 IPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of MELO3C017641 vs. NCBI nr
Match: gi|449458405|ref|XP_004146938.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus])

HSP 1 Score: 425.6 bits (1093), Expect = 5.1e-116
Identity = 197/216 (91.20%), Postives = 206/216 (95.37%), Query Frame = 1


Query: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFS VSLPE+TVGNLTEK DDTAVFS+DEFRMYSYKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+FNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETK K + +A +QRVAV A+ESPPEEKNDGILE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180

Query: 181 IPARENGGGRKNERSFGFDVSELELPHIEWISELLK 217
           IPAR +G GRKNERSFG DV+ELELPHIEWISELLK
Sbjct: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216

[Close]

BLAST of MELO3C017641 vs. NCBI nr
Match: gi|720062533|ref|XP_010275497.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Nelumbo nucifera])

HSP 1 Score: 240.0 bits (611), Expect = 4.0e-60
Identity = 116/214 (54.21%), Postives = 143/214 (66.82%), Query Frame = 1


Query: 36  DTAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D  ++ +DEFRMY++KI+RC RNRSHDWTECPYAHRGEKA+RRDPR+ NY AV CP FRS
Sbjct: 29  DDEMYDSDEFRMYAFKIKRCTRNRSHDWTECPYAHRGEKARRRDPRKINYAAVVCPEFRS 88

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKHK--- 155
           G CPKGD CEFAHGVFE+WLHPA+YRTRACNAG++C+RKVCFFAHSPE+LR ETK+K   
Sbjct: 89  GECPKGDSCEFAHGVFEFWLHPAKYRTRACNAGKYCRRKVCFFAHSPEQLRSETKYKCYY 148

Query: 156 ---------------FNLNAQRQRVAVAAVESPPEEKNDGILEIPAREN----------- 215
                             +A  + + + +   P   KN    EIP+ +N           
Sbjct: 149 TYGAPMDRSNFGEGITGASADDREIDITSYNPPVSSKN----EIPSEDNWHFSQSFQKLK 208

Query: 216 ----GGGRKNERSFGFDVSELELPHIEWISELLK 217
               G     ER+FG+DVS  +LP I+WISEL+K
Sbjct: 209 IYDHGDDEGRERNFGWDVS--DLPDIDWISELVK 236

[Close]

BLAST of MELO3C017641 vs. NCBI nr
Match: gi|702501182|ref|XP_010038410.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis])

HSP 1 Score: 237.7 bits (605), Expect = 2.0e-59
Identity = 113/204 (55.39%), Postives = 138/204 (67.65%), Query Frame = 1


Query: 39  VFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSC 98
           V+++DEFRMY+YK++RCPR RSHDWTECPYAHRGEKAQRRDPR+  Y AVACPAFR GSC
Sbjct: 26  VYNSDEFRMYAYKVKRCPRTRSHDWTECPYAHRGEKAQRRDPRKVRYAAVACPAFRGGSC 85

Query: 99  PKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQ 158
            KG  CEFAHGVFEYWLHPARYRTRACNAG FCQRKVCFFAHSP+ELRPETK+K + +A 
Sbjct: 86  LKGSSCEFAHGVFEYWLHPARYRTRACNAGEFCQRKVCFFAHSPDELRPETKYKCSRSAH 145

Query: 159 RQRV-------AVAAVESPPEEKNDGILEIPAREN--------------------GGGRK 216
           R RV       +VA   +P   + +   ++   +                     G G  
Sbjct: 146 RPRVVEIHGSRSVAPARTPGSPRGNVGSDVEVGDKVSDLLKSPRRLSVRGSDDDDGDGEL 205

[Close]

BLAST of MELO3C017641 vs. NCBI nr
Match: gi|530341557|gb|AGT21469.1| (PEI1-like [Carica papaya])

HSP 1 Score: 231.5 bits (589), Expect = 1.4e-57
Identity = 110/199 (55.28%), Postives = 141/199 (70.85%), Query Frame = 1


Query: 36  DTAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ +DEFRM++YKI+RCPR RSHDWTECPYAHRGEKAQRRDPR+ +Y AVACPAFR+
Sbjct: 50  DEAIYGSDEFRMFAYKIKRCPRMRSHDWTECPYAHRGEKAQRRDPRKLSYCAVACPAFRN 109

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNL 155
           G C +G+ C+FAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+P++LR ETK+K  +
Sbjct: 110 GRCYRGETCDFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPQQLRSETKYKCQV 169

Query: 156 NAQRQRVAVAAVESPPEE-----------KNDGILEIPARE--------NGGGRKNERSF 215
             + +      V   P +           +  G +++P +E        +  G K +   
Sbjct: 170 TYRGRMYGGDEVIRRPVQVGSSQGRMLMSRAPGPVKMPMKEEVPGDFLRSLSGLKIKEKG 229

The following BLAST results are available for this feature:

BLAST of MELO3C017641 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H54_ARATH	2.2e-55	53.37	Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE...	[more]
C3H23_ARATH	2.3e-44	51.79	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g259...	[more]
C3H49_ARATH	3.0e-44	69.16	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g291...	[more]
C3H35_ORYSJ	6.8e-44	56.74	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN...	[more]
C3H56_ARATH	8.9e-44	61.42	Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g128...	[more]

BLAST of MELO3C017641 vs. TrEMBL


Match Name	E-value	Identity	Description
T1SFR9_CARPA	9.8e-58	55.28	PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1	[more]
W9SQQ1_9ROSA	2.2e-57	67.11	Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 ...	[more]
W9SQQ1_9ROSA	2.3e+02	55.56	Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 ...	[more]
Q6V5F9_9BRAS	1.0e-54	53.33	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002521mg PE=4 SV=1	[more]
Q6V5E1_OLIPU	3.0e-54	55.45	Zn-finger transcription factor OS=Olimarabidopsis pumila GN=Op_7500 PE=4 SV=1	[more]

BLAST of MELO3C017641 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07500.1	1.3e-56	53.37	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	1.3e-45	51.79	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	1.7e-45	69.16	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G12850.1	5.0e-45	61.42	CCCH-type zinc finger protein with ARM repeat domain	[more]
AT2G41900.1	6.5e-45	65.45	CCCH-type zinc finger protein with ARM repeat domain	[more]

BLAST of MELO3C017641 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108959\|ref\|XP_008454474.1\|	1.1e-126	100.00	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo]	[more]
gi\|449458405\|ref\|XP_004146938.1\|	5.1e-116	91.20	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus]	[more]
gi\|720062533\|ref\|XP_010275497.1\|	4.0e-60	54.21	PREDICTED: zinc finger CCCH domain-containing protein 54 [Nelumbo nucifera]	[more]
gi\|702501182\|ref\|XP_010038410.1\|	2.0e-59	55.39	PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis]	[more]
gi\|530341557\|gb\|AGT21469.1\|	1.4e-57	55.28	PEI1-like [Carica papaya]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017641T1	MELO3C017641T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 89..112 score: 2.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 88..109 score: 1.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 84..110 score: 1.2E-5coord: 119..142 score:
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 84..111 score: 13
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 83..114 score: 3.6
None	No IPR available	PANTHER	PTHR14493	UNCHARACTERIZED	coord: 39..149 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C017641	Cla010708	Watermelon (97103) v1	mewmB506
MELO3C017641	ClCG07G017030	Watermelon (Charleston Gray)	mewcgB493
MELO3C017641	Cla97C07G144080	Watermelon (97103) v2	mewmbB498
MELO3C017641	Bhi01G002001	Wax gourd	mewgoB568
MELO3C017641	CSPI04G04180	Wild cucumber (PI 183967)	cpimeB310
MELO3C017641	Cucsa.094060	Cucumber (Gy14) v1	cgymeB111
MELO3C017641	CmaCh16G002210	Cucurbita maxima (Rimu)	cmameB304
MELO3C017641	CmoCh16G002390	Cucurbita moschata (Rifu)	cmomeB299
MELO3C017641	Lsi07G001210	Bottle gourd (USVL1VR-Ls)	lsimeB454
MELO3C017641	CsGy4G004090	Cucumber (Gy14) v2	cgybmeB269
MELO3C017641	Carg16762	Silver-seed gourd	carmeB0862
MELO3C017641	CsaV3_4G004250	Cucumber (Chinese Long) v3	cucmeB315

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C017641	Cucumber (Gy14) v2	cgybmeB357
MELO3C017641	Silver-seed gourd	carmeB0384
MELO3C017641	Silver-seed gourd	carmeB0710
MELO3C017641	Cucumber (Chinese Long) v3	cucmeB420
MELO3C017641	Watermelon (97103) v2	mewmbB459
MELO3C017641	Cucurbita maxima (Rimu)	cmameB702
MELO3C017641	Cucurbita moschata (Rifu)	cmomeB573
MELO3C017641	Cucurbita moschata (Rifu)	cmomeB694
MELO3C017641	Wild cucumber (PI 183967)	cpimeB407
MELO3C017641	Cucumber (Chinese Long) v2	cumeB312
MELO3C017641	Cucumber (Chinese Long) v2	cumeB410
MELO3C017641	Watermelon (Charleston Gray)	mewcgB470
MELO3C017641	Watermelon (97103) v1	mewmB532
MELO3C017641	Cucurbita pepo (Zucchini)	cpemeB202
MELO3C017641	Cucurbita pepo (Zucchini)	cpemeB425
MELO3C017641	Cucurbita pepo (Zucchini)	cpemeB703
MELO3C017641	Bottle gourd (USVL1VR-Ls)	lsimeB039