CsGy4G004090 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G004090
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	zinc finger CCCH domain-containing protein 54
Location	Chr4 : 2648226 .. 2648876 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGTCACGAATTCTCCGTCGTGTCACTGCCGGAACTCACTGTCGGTAACTTAACGGAGAAAACAGACGACACGGCGGTGTTCAGCTCCGACGAATTTCGGATGTACTCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCATGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCAGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCCGGGAGCTGCCCGAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTTCGGCCAGAAACCAAACAGAAGTCTAGTTTTAGTGCCCACCAGCAGCGTGTGGCGGTGGATGCCATTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCGGCGAGGGTGAGCGGCAGCGGACGGAAAAATGAACGGAGTTTTGGATTGGATGTGACGGAATTGGAGTTGCCGCATATTGAATGGATATCCGAATTGTTGAAGTAA

mRNA sequence

ATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGTCACGAATTCTCCGTCGTGTCACTGCCGGAACTCACTGTCGGTAACTTAACGGAGAAAACAGACGACACGGCGGTGTTCAGCTCCGACGAATTTCGGATGTACTCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCATGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCAGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCCGGGAGCTGCCCGAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTTCGGCCAGAAACCAAACAGAAGTCTAGTTTTAGTGCCCACCAGCAGCGTGTGGCGGTGGATGCCATTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCGGCGAGGGTGAGCGGCAGCGGACGGAAAAATGAACGGAGTTTTGGATTGGATGTGACGGAATTGGAGTTGCCGCATATTGAATGGATATCCGAATTGTTGAAGTAA

Coding sequence (CDS)

ATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGTCACGAATTCTCCGTCGTGTCACTGCCGGAACTCACTGTCGGTAACTTAACGGAGAAAACAGACGACACGGCGGTGTTCAGCTCCGACGAATTTCGGATGTACTCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCATGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCAGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCCGGGAGCTGCCCGAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTTCGGCCAGAAACCAAACAGAAGTCTAGTTTTAGTGCCCACCAGCAGCGTGTGGCGGTGGATGCCATTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCGGCGAGGGTGAGCGGCAGCGGACGGAAAAATGAACGGAGTTTTGGATTGGATGTGACGGAATTGGAGTTGCCGCATATTGAATGGATATCCGAATTGTTGAAGTAA

Protein sequence

MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK

Homology

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BLAST of CsGy4G004090 vs. NCBI nr
Match: XP_004146938.1 (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus])

HSP 1 Score: 457.2 bits (1175), Expect = 3.1e-125
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180

Query: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 217
           IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK
Sbjct: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216

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BLAST of CsGy4G004090 vs. NCBI nr
Match: XP_008454474.1 (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo])

HSP 1 Score: 424.9 bits (1091), Expect = 1.7e-115
Identity = 197/216 (91.20%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFS VSLPE+TVGNLTEK DDTAVFS+DEFRMYSYKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+FNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETK K + +A +QRVAV A+ESPPEEKNDGILE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180

Query: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 217
           IPAR +G GRKNERSFG DV+ELELPHIEWISELLK
Sbjct: 181 IPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

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BLAST of CsGy4G004090 vs. NCBI nr
Match: XP_023553083.1 (zinc finger CCCH domain-containing protein 54 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.1 bits (910), Expect = 1.6e-94
Identity = 165/218 (75.69%), Postives = 185/218 (84.86%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGN--LTEKTDDTAVFSSDEFRMYSYKIQRCPRN 60
           M QGFVFGINDVYGHEF+ V+LPE    N  LT +TDDTA+F+SDEFRMY++KIQRCP++
Sbjct: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120
           RSHDWTECPYAHRGEKAQRRDPR+FNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGI 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K  F A   RVA+ A+E P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARVALAALEYPVERKNDGV 180

Query: 181 LEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 217
            EIP +    G  NERS  L+ +E ELPHIEWISELL+
Sbjct: 181 SEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 218

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BLAST of CsGy4G004090 vs. NCBI nr
Match: XP_022922815.1 (zinc finger CCCH domain-containing protein 54 [Cucurbita moschata])

HSP 1 Score: 353.6 bits (906), Expect = 4.8e-94
Identity = 164/218 (75.23%), Postives = 184/218 (84.40%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGN--LTEKTDDTAVFSSDEFRMYSYKIQRCPRN 60
           M QGFVFGINDVYGHEF+ V+LPE    N  LT +TDDTA+F+SDEFRMY++KIQRCP++
Sbjct: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120
           RSHDWTECPYAHRGEKAQRRDPR+FNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGI 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K  F A   R A+ A+E P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180

Query: 181 LEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 217
            EIP +    G  NERS  L+ +E ELPHIEWISELL+
Sbjct: 181 SEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 218

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BLAST of CsGy4G004090 vs. NCBI nr
Match: XP_022985508.1 (zinc finger CCCH domain-containing protein 54 [Cucurbita maxima])

HSP 1 Score: 349.4 bits (895), Expect = 9.0e-93
Identity = 162/218 (74.31%), Postives = 185/218 (84.86%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGN--LTEKTDDTAVFSSDEFRMYSYKIQRCPRN 60
           MFQGFVFGINDVYGHEF+ V+LPE    N  LT +T+DTA+F+SDEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120
           RSHDWTECPYAHRGEKAQRRDPR+FNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGI 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K  F+A  +R A+ A++ P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180

Query: 181 LEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 217
            EI       G  NERS  L+ +E ELPHIEWISELL+
Sbjct: 181 SEIXXXEISDGLGNERSSELEASESELPHIEWISELLQ 218

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BLAST of CsGy4G004090 vs. TAIR10
Match: AT5G07500.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-56
Identity = 111/210 (52.86%), Postives = 130/210 (61.90%), Query Frame = 0


Query: 36  DTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRS 95
           D A++ SDEFRMY+YKI+RCPR RSHDWTECPYAHRGEKA RRDPR++ Y AVACPAFR+
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSF 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR       S 
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLR------QSE 163

Query: 156 SAHQQRVAVDAIESPPEEKNDGILEIPARVSGSGRKNERS------FGLDVTE------- 215
             H+ R A   + +      DG   +  R+   G    RS        LD  E       
Sbjct: 164 GKHRCRYAYRPVRARGGGNGDG---VTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKC 223

[Close]

BLAST of CsGy4G004090 vs. TAIR10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 181.0 bits (458), Expect = 7.7e-46
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 11  DVYGHEFSVVSLPELTVGNLTEKTDD----TAVFSSDEFRMYSYKIQRCPRNRSHDWTEC 70
           D +   F  +   ELT  + +   D+    T  FSSDEFR+Y +KI+RC R RSHDWTEC
Sbjct: 53  DSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTEC 112

Query: 71  PYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACN 130
           P+AH GEKA+RRDPR+F+Y+  ACP FR GSC +GD CEF+HGVFE WLHP+RYRT+ C 
Sbjct: 113 PFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCK 172

Query: 131 AGRFCQRKVCFFAHSPEELR-------PETKQKSSFSAHQQRVAVDAIESPPEE 174
            G  C+R++CFFAH+ E+LR       P+    S  +     + V    SPP E
Sbjct: 173 DGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSPTSILVSPSFSPPSE 226

[Close]

BLAST of CsGy4G004090 vs. TAIR10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 179.5 bits (454), Expect = 2.2e-45
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 40  FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCP 99
           +S D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

[Close]

BLAST of CsGy4G004090 vs. TAIR10
Match: AT2G19810.1 (CCCH-type zinc finger family protein)

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-44
Identity = 71/107 (66.36%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 40  FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCP 99
           ++ D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+F+Y+  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           +GD CEF+HGVFE WLHPARYRT+ C  G  C+R+VCFFAHSP+++R
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIR 180

[Close]

BLAST of CsGy4G004090 vs. TAIR10
Match: AT2G41900.1 (CCCH-type zinc finger protein with ARM repeat domain)

HSP 1 Score: 176.0 bits (445), Expect = 2.5e-44
Identity = 71/110 (64.55%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 38  AVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGS 97
           +++++DEFRMYS+K++ C R  SHDWTECP+ H GE A+RRDPR+F+Y+ V CP FR G+
Sbjct: 255 SIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA 314

Query: 98  CPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRP 148
           C +GD CE+AHGVFE WLHPA+YRTR C  G  C R+VCFFAH+PEELRP
Sbjct: 315 CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRP 364

[Close]

BLAST of CsGy4G004090 vs. Swiss-Prot
Match: sp|O65036|C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN=PEI1 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.3e-55
Identity = 111/210 (52.86%), Postives = 130/210 (61.90%), Query Frame = 0


Query: 36  DTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRS 95
           D A++ SDEFRMY+YKI+RCPR RSHDWTECPYAHRGEKA RRDPR++ Y AVACPAFR+
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSF 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR       S 
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLR------QSE 163

Query: 156 SAHQQRVAVDAIESPPEEKNDGILEIPARVSGSGRKNERS------FGLDVTE------- 215
             H+ R A   + +      DG   +  R+   G    RS        LD  E       
Sbjct: 164 GKHRCRYAYRPVRARGGGNGDG---VTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKC 223

[Close]

BLAST of CsGy4G004090 vs. Swiss-Prot
Match: sp|O82307|C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.4e-44
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 11  DVYGHEFSVVSLPELTVGNLTEKTDD----TAVFSSDEFRMYSYKIQRCPRNRSHDWTEC 70
           D +   F  +   ELT  + +   D+    T  FSSDEFR+Y +KI+RC R RSHDWTEC
Sbjct: 53  DSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTEC 112

Query: 71  PYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACN 130
           P+AH GEKA+RRDPR+F+Y+  ACP FR GSC +GD CEF+HGVFE WLHP+RYRT+ C 
Sbjct: 113 PFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCK 172

Query: 131 AGRFCQRKVCFFAHSPEELR-------PETKQKSSFSAHQQRVAVDAIESPPEE 174
            G  C+R++CFFAH+ E+LR       P+    S  +     + V    SPP E
Sbjct: 173 DGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSPTSILVSPSFSPPSE 226

[Close]

BLAST of CsGy4G004090 vs. Swiss-Prot
Match: sp|Q9M0G2|C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-44
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 40  FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCP 99
           +S D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

[Close]

BLAST of CsGy4G004090 vs. Swiss-Prot
Match: sp|Q9FU27|C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.9e-44
Identity = 73/115 (63.48%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 40  FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCP 99
           ++ DEFRMY +K++RC R RSHDWTECP+AH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 72  YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 131

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSS 155
           +GD CE+AHGVFE WLHPARYRT+ C  G  C+R+VCFFAH+P++LR    Q+SS
Sbjct: 132 RGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQSS 186

[Close]

BLAST of CsGy4G004090 vs. Swiss-Prot
Match: sp|Q6L4N4|C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 75/119 (63.03%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 40  FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCP 99
           ++ DEFRMY +K++RC R RSHDWTECP+AH GEKA+RRDPR++ Y+  ACP FR G C 
Sbjct: 73  YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCK 132

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR--PETKQKSSFS 157
           +GD CEFAHGVFE WLHPARYRT+ C  G  C+R+VCFFAH+P++LR  P ++Q+ S S
Sbjct: 133 RGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNS 191

[Close]

BLAST of CsGy4G004090 vs. TrEMBL
Match: tr|A0A1S3BYP8|A0A1S3BYP8_CUCME (zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC103494870 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 1.1e-115
Identity = 197/216 (91.20%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFS VSLPE+TVGNLTEK DDTAVFS+DEFRMYSYKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+FNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETK K + +A +QRVAV A+ESPPEEKNDGILE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180

Query: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 217
           IPAR +G GRKNERSFG DV+ELELPHIEWISELLK
Sbjct: 181 IPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of CsGy4G004090 vs. TrEMBL
Match: tr|A0A2I4FHE0|A0A2I4FHE0_9ROSI (zinc finger CCCH domain-containing protein 54 OS=Juglans regia OX=51240 GN=LOC108998817 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.5e-59
Identity = 123/240 (51.25%), Postives = 158/240 (65.83%), Query Frame = 0


Query: 8   GINDVYGHEFSVVSLPE-LTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTEC 67
           GIN  + ++FS    P+ +T         D AVF +DEFRMY++KI+RCPR RSHDWTEC
Sbjct: 4   GINPGF-YDFSEQQFPQVVTPSEFNSDHIDNAVFGTDEFRMYAFKIKRCPRVRSHDWTEC 63

Query: 68  PYAHRGEKAQRRDPRQFNYTAVACPAFR-SGSCPKGDFCEFAHGVFEYWLHPARYRTRAC 127
           PYAHRGEKAQRRDP +FNY+A+ACPAFR +G CPK D CEFAHGVFEYWLHPARYRTRAC
Sbjct: 64  PYAHRGEKAQRRDPSKFNYSAIACPAFRMNGKCPKSDACEFAHGVFEYWLHPARYRTRAC 123

Query: 128 NAGRFCQRKVCFFAHSPEELRPETKQKSSFS-----------AHQQRVAVDAIESPPEE- 187
           NAG++CQRKVCFFAH+PE+LR ETK K  ++           ++    A+ A+   PE+ 
Sbjct: 124 NAGKYCQRKVCFFAHTPEQLRSETKYKFHYAYRARNNGTGDRSNGNEGAISAVPPVPEQL 183

Query: 188 ---KN-----DGILEIPARVSG---------SGRKNERSFGLDVTELELPHIEWISELLK 217
              KN     DG+ E    + G           +++  S   ++ + +LPH+ WISELL+
Sbjct: 184 TRKKNESNCFDGVSEFLKTLRGLKIRDCEEAGDQRSSTSNCWELPDSDLPHLGWISELLQ 242

[Close]

BLAST of CsGy4G004090 vs. TrEMBL
Match: tr|A0A2N9G8R6|A0A2N9G8R6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23742 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.2e-58
Identity = 107/150 (71.33%), Postives = 121/150 (80.67%), Query Frame = 0


Query: 8   GIN-DVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTEC 67
           GIN  +YG  FS   +P L        T D  +F SDEFRMY+YKI+RCPR RSHDWTEC
Sbjct: 4   GINPSIYG--FSEHQIPNLVPAEYNNDTIDEVIFGSDEFRMYAYKIKRCPRMRSHDWTEC 63

Query: 68  PYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACN 127
           PYAHRGEKAQRRDPR+F Y+A+ACPAFR+G C KGD CEFAHGVFEYWLHPARYRTRACN
Sbjct: 64  PYAHRGEKAQRRDPRKFIYSAIACPAFRNGKCLKGDACEFAHGVFEYWLHPARYRTRACN 123

Query: 128 AGRFCQRKVCFFAHSPEELRPETKQKSSFS 157
           AGR+CQRKVCFFAH+PE+LR ETK K  ++
Sbjct: 124 AGRYCQRKVCFFAHTPEQLRSETKYKCHYT 151

[Close]

BLAST of CsGy4G004090 vs. TrEMBL
Match: tr|A0A1U8BFD3|A0A1U8BFD3_NELNU (zinc finger CCCH domain-containing protein 54 OS=Nelumbo nucifera OX=4432 GN=LOC104610532 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.2e-58
Identity = 118/214 (55.14%), Postives = 143/214 (66.82%), Query Frame = 0


Query: 36  DTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRS 95
           D  ++ SDEFRMY++KI+RC RNRSHDWTECPYAHRGEKA+RRDPR+ NY AV CP FRS
Sbjct: 29  DDEMYDSDEFRMYAFKIKRCTRNRSHDWTECPYAHRGEKARRRDPRKINYAAVVCPEFRS 88

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQK--- 155
           G CPKGD CEFAHGVFE+WLHPA+YRTRACNAG++C+RKVCFFAHSPE+LR ETK K   
Sbjct: 89  GECPKGDSCEFAHGVFEFWLHPAKYRTRACNAGKYCRRKVCFFAHSPEQLRSETKYKCYY 148

Query: 156 --------SSF-------SAHQQRVAVDAIESPPEEKNDGILEIPARVS----------- 215
                   S+F       SA  + + + +   P   KN    EIP+  +           
Sbjct: 149 TYGAPMDRSNFGEGITGASADDREIDITSYNPPVSSKN----EIPSEDNWHFSQSFQKLK 208

Query: 216 ----GSGRKNERSFGLDVTELELPHIEWISELLK 217
               G     ER+FG DV+  +LP I+WISEL+K
Sbjct: 209 IYDHGDDEGRERNFGWDVS--DLPDIDWISELVK 236

[Close]

BLAST of CsGy4G004090 vs. TrEMBL
Match: tr|A0A2P4KYC2|A0A2P4KYC2_QUESU (Zinc finger ccch domain-containing protein 54 OS=Quercus suber OX=58331 GN=CFP56_42477 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.8e-58
Identity = 122/242 (50.41%), Postives = 154/242 (63.64%), Query Frame = 0


Query: 8   GIN-DVYG---HEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRSHDW 67
           GIN  +YG   H+F  +  PE     +     D A+F SDEFRMY+YKI+RCPR RSHDW
Sbjct: 4   GINPSIYGFSEHQFPNLVPPEYYNNTINNDHIDEAIFGSDEFRMYAYKIKRCPRMRSHDW 63

Query: 68  TECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTR 127
           TECPYAHRGEKAQRRDPR+F+Y+AVAC AFR+G C KGD CEFAHGVFEYWLHPARYRTR
Sbjct: 64  TECPYAHRGEKAQRRDPRKFSYSAVACSAFRTGKCHKGDTCEFAHGVFEYWLHPARYRTR 123

Query: 128 ACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVA-VDAIES------------- 187
           ACNAGR+CQRKVCFFAH+PE+LR ET  K  ++   + ++  D +               
Sbjct: 124 ACNAGRYCQRKVCFFAHTPEQLRSETNYKCHYTYRPRMISGGDGVRDGSSGQEDATTPHL 183

Query: 188 --------PPEEKN-------DGILEIPARVSGSGRKNERSFGLDVTELELPHIEWISEL 217
                     E+K+       DG+ E    + G   ++      + +E +LP I+WISEL
Sbjct: 184 PXXXXXXXXXEKKHVVENFCCDGVSEFLKSLRGLKIRDVED-NCESSESDLPQIDWISEL 243

The following BLAST results are available for this feature:

BLAST of CsGy4G004090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146938.1	3.1e-125	100.00	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus]	[more]
XP_008454474.1	1.7e-115	91.20	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo]	[more]
XP_023553083.1	1.6e-94	75.69	zinc finger CCCH domain-containing protein 54 [Cucurbita pepo subsp. pepo]	[more]
XP_022922815.1	4.8e-94	75.23	zinc finger CCCH domain-containing protein 54 [Cucurbita moschata]	[more]
XP_022985508.1	9.0e-93	74.31	zinc finger CCCH domain-containing protein 54 [Cucurbita maxima]	[more]

BLAST of CsGy4G004090 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07500.1	1.3e-56	52.86	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	7.7e-46	50.00	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	2.2e-45	69.16	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G19810.1	1.4e-44	66.36	CCCH-type zinc finger family protein	[more]
AT2G41900.1	2.5e-44	64.55	CCCH-type zinc finger protein with ARM repeat domain	[more]

BLAST of CsGy4G004090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O65036\|C3H54_ARATH	2.3e-55	52.86	Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|O82307\|C3H23_ARATH	1.4e-44	50.00	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9M0G2\|C3H49_ARATH	4.0e-44	69.16	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9FU27\|C3H2_ORYSJ	6.9e-44	63.48	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
sp\|Q6L4N4\|C3H35_ORYSJ	1.2e-43	63.03	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of CsGy4G004090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BYP8\|A0A1S3BYP8_CUCME	1.1e-115	91.20	zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A2I4FHE0\|A0A2I4FHE0_9ROSI	2.5e-59	51.25	zinc finger CCCH domain-containing protein 54 OS=Juglans regia OX=51240 GN=LOC10...	[more]
tr\|A0A2N9G8R6\|A0A2N9G8R6_FAGSY	1.2e-58	71.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23742 PE=4 SV=1	[more]
tr\|A0A1U8BFD3\|A0A1U8BFD3_NELNU	1.2e-58	55.14	zinc finger CCCH domain-containing protein 54 OS=Nelumbo nucifera OX=4432 GN=LOC...	[more]
tr\|A0A2P4KYC2\|A0A2P4KYC2_QUESU	2.8e-58	50.41	Zinc finger ccch domain-containing protein 54 OS=Quercus suber OX=58331 GN=CFP56...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036855	Znf_CCCH_sf
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G004090.1	CsGy4G004090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 84..110 e-value: 1.2E-5 score: 34.7 coord: 119..142 e-value: 13.0 score: 7.5
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 88..109 e-value: 1.1E-5 score: 25.1
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 84..111 score: 13.197
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 79..157 e-value: 1.2E-7 score: 33.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..178
None	No IPR available	PANTHER	PTHR14493:SF74	RING FINGER PROTEIN UNKEMPT	coord: 36..162
None	No IPR available	PANTHER	PTHR14493	UNCHARACTERIZED	coord: 36..162
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 83..114

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G004090	Cla010708	Watermelon (97103) v1	cgybwmB290
CsGy4G004090	MELO3C017641	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G004090	ClCG07G017030	Watermelon (Charleston Gray)	cgybwcgB297
CsGy4G004090	CSPI04G04180	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G004090	CmaCh16G002210	Cucurbita maxima (Rimu)	cgybcmaB493
CsGy4G004090	CmoCh16G002390	Cucurbita moschata (Rifu)	cgybcmoB464
CsGy4G004090	Lsi07G001210	Bottle gourd (USVL1VR-Ls)	cgyblsiB277
CsGy4G004090	MELO3C017641.2	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G004090	CsaV3_4G004250	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G004090	Cla97C07G144080	Watermelon (97103) v2	cgybwmbB298
CsGy4G004090	Bhi01G002001	Wax gourd	cgybwgoB361
CsGy4G004090	Carg16762	Silver-seed gourd	carcgybB0860

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G004090	Cucumber (Gy14) v2	cgybcgybB126
CsGy4G004090	Cucurbita maxima (Rimu)	cgybcmaB542
CsGy4G004090	Cucurbita moschata (Rifu)	cgybcmoB516
CsGy4G004090	Cucurbita moschata (Rifu)	cgybcmoB497
CsGy4G004090	Cucurbita pepo (Zucchini)	cgybcpeB484
CsGy4G004090	Cucurbita pepo (Zucchini)	cgybcpeB503
CsGy4G004090	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G004090	Cucumber (Chinese Long) v2	cgybcuB181
CsGy4G004090	Bottle gourd (USVL1VR-Ls)	cgyblsiB230
CsGy4G004090	Watermelon (Charleston Gray)	cgybwcgB266
CsGy4G004090	Wild cucumber (PI 183967)	cgybcpiB184
CsGy4G004090	Silver-seed gourd	carcgybB0382
CsGy4G004090	Silver-seed gourd	carcgybB0708
CsGy4G004090	Cucumber (Chinese Long) v3	cgybcucB184
CsGy4G004090	Watermelon (97103) v2	cgybwmbB255