CSPI04G04180 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G04180
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Zinc finger CCCH domain-containing protein
Location	Chr4 : 2685528 .. 2686932 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTGAAACCTGAGCCTTTCCCTCAAGCTCTCTCCTTTTCTCAACAATGGTGTTTCTCTCTCTCTCTCCTCCTCAATCCATAATTTCTCTCAGGTATACCTTAATTAAATATATAATAACAAAATTCTGTAGAAACACCCCATTTCTCAGTTCCATATTTTTAGTTAATTCCCTTCAAATCCGTTTCCTAAACTTTCAATTTTTATATTAATTACAACACATTTGTGATTTGTTCTTCTTGCAGTCCAATTAATTAGTGTGCATATATTATGTTGCACATTTTACCAAGTTTTTTTAAAAAATAAAAAAAAAACCCATTTCTCAATTTCTTATTTTTAATGAATTCCCTCAAACTGTTTTACTAAAGTTTCAATTTTTTTAATTAATTAATACATTTATGATTTGTTCTTCTTGCAGGTGAATAATCAGTGCATATATATATATACACATATATATATATTGTATATTTACTTTCTTTTTTTTTTTATAAAATTGAAAAACCCCATTTCTTAATTTTTCAATTCAATTAATTCCCTTGAATTCCTTTCCCAAACTTTCATTTTTTAAAAAAAATTAAATAACACATTTGTGATTTGTTCTTCTTGCAGGTGAATTAAGTAATATCTATTGTAAGTAAAACCATGTCTTGATTGGAAAAGAAAAAAGGCAGTCGTTATTATTTTGTATATTTAATTTTTATTTTTTCATTCAAAAAAATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGTCACGAATTCTCCGTCGTGTCACTGCCGGAACTCACTGTCGGTAACTTAACGGAGAAAACAGACGACACGGCGGTGTTCAGCTCCGATGAATTTCGGATGTACTCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCATGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCAGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCCGGGAGCTGCCCGAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTTCGGCCAGAAACCAAACAGAAGTCTAGTTTTAGTGCCCACCAGCAGCGTGTGGCGGTGGATGCCATTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCGGCGAGGGTGAGCGGCAGCGGACGGAAAAATGAACGGAGTTTTGGATTGGATGTGACGGAATTGGAGTTGCCGCATATTGAATGGATATCCGAATTGTTGAAGTAAATTCAATAAAGAATAATAATAAGAAAAGCATTTGGGG

mRNA sequence

ATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGTCACGAATTCTCCGTCGTGTCACTGCCGGAACTCACTGTCGGTAACTTAACGGAGAAAACAGACGACACGGCGGTGTTCAGCTCCGATGAATTTCGGATGTACTCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCATGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCAGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCCGGGAGCTGCCCGAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTTCGGCCAGAAACCAAACAGAAGTCTAGTTTTAGTGCCCACCAGCAGCGTGTGGCGGTGGATGCCATTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCGGCGAGGGTGAGCGGCAGCGGACGGAAAAATGAACGGAGTTTTGGATTGGATGTGACGGAATTGGAGTTGCCGCATATTGAATGGATATCCGAATTGTTGAAGTAA

Coding sequence (CDS)

ATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGTCACGAATTCTCCGTCGTGTCACTGCCGGAACTCACTGTCGGTAACTTAACGGAGAAAACAGACGACACGGCGGTGTTCAGCTCCGATGAATTTCGGATGTACTCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCATGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCAGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCCGGGAGCTGCCCGAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAACTTCGGCCAGAAACCAAACAGAAGTCTAGTTTTAGTGCCCACCAGCAGCGTGTGGCGGTGGATGCCATTGAAAGTCCGCCGGAGGAAAAGAATGACGGAATTTTGGAAATCCCGGCGAGGGTGAGCGGCAGCGGACGGAAAAATGAACGGAGTTTTGGATTGGATGTGACGGAATTGGAGTTGCCGCATATTGAATGGATATCCGAATTGTTGAAGTAA

Homology

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BLAST of CSPI04G04180 vs. Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-55
Identity = 111/210 (52.86%), Postives = 130/210 (61.90%), Query Frame = 1


Query: 36  DTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRS 95
           D A++ SDEFRMY+YKI+RCPR RSHDWTECPYAHRGEKA RRDPR++ Y AVACPAFR+
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSF 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR       S 
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLR------QSE 163

Query: 156 SAHQQRVAVDAIESPPEEKNDGILEIPARVSGSGRKNERS------FGLDVTE------- 215
             H+ R A   + +      DG   +  R+   G    RS        LD  E       
Sbjct: 164 GKHRCRYAYRPVRARGGGNGDG---VTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKC 223

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BLAST of CSPI04G04180 vs. Swiss-Prot
Match: C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.4e-44
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 1


Query: 11  DVYGHEFSVVSLPELTVGNLTEKTDD----TAVFSSDEFRMYSYKIQRCPRNRSHDWTEC 70
           D +   F  +   ELT  + +   D+    T  FSSDEFR+Y +KI+RC R RSHDWTEC
Sbjct: 53  DSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTEC 112

Query: 71  PYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACN 130
           P+AH GEKA+RRDPR+F+Y+  ACP FR GSC +GD CEF+HGVFE WLHP+RYRT+ C 
Sbjct: 113 PFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCK 172

Query: 131 AGRFCQRKVCFFAHSPEELR-------PETKQKSSFSAHQQRVAVDAIESPPEE 174
            G  C+R++CFFAH+ E+LR       P+    S  +     + V    SPP E
Sbjct: 173 DGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSPTSILVSPSFSPPSE 226

[Close]

BLAST of CSPI04G04180 vs. Swiss-Prot
Match: C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-44
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 1


Query: 40  FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCP 99
           +S D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

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BLAST of CSPI04G04180 vs. Swiss-Prot
Match: C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-44
Identity = 78/140 (55.71%), Postives = 102/140 (72.86%), Query Frame = 1


Query: 22  LPELTVGNLTEKTDDTAV-------FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEK 81
           LP   VG   ++ ++ A        ++ DEFRMY +K++RC R RSHDWTECP+AH GEK
Sbjct: 47  LPANDVGVGADEEEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEK 106

Query: 82  AQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRK 141
           A+RRDPR+++Y+  ACP FR G C +GD CE+AHGVFE WLHPARYRT+ C  G  C+R+
Sbjct: 107 ARRRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRR 166

Query: 142 VCFFAHSPEELRPETKQKSS 155
           VCFFAH+P++LR    Q+SS
Sbjct: 167 VCFFAHTPDQLRVLPAQQSS 186

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BLAST of CSPI04G04180 vs. Swiss-Prot
Match: C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-43
Identity = 80/141 (56.74%), Postives = 99/141 (70.21%), Query Frame = 1


Query: 40  FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCP 99
           ++ DEFRMY +K++RC R RSHDWTECP+AH GEKA+RRDPR++ Y+  ACP FR G C 
Sbjct: 73  YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCK 132

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR---PETKQKSSFS 159
           +GD CEFAHGVFE WLHPARYRT+ C  G  C+R+VCFFAH+P++LR   P  +Q S+  
Sbjct: 133 RGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSP 192

Query: 160 AHQQRVAVDAIESPPEEKNDG 178
                    A  SP  E  DG
Sbjct: 193 RGCGGGGAGAAASPLAESYDG 213

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BLAST of CSPI04G04180 vs. TrEMBL
Match: W9SQQ1_9ROSA (Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.4e-58
Identity = 107/168 (63.69%), Postives = 127/168 (75.60%), Query Frame = 1


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60
           M +G    + D   H +    L   T   L ++  + A++ SDEFRMY+YKI+RCPR RS
Sbjct: 1   MLKGINPTVYDFSDHHY----LSAATAAELNDRAVNEAIYGSDEFRMYAYKIKRCPRMRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+ NY A+ CPAFR+G C KGD CEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRKHNYAAIVCPAFRNGGCEKGDACEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVA-VDAI 168
           RTRACN+G+FCQRKVCFFAHSPE+LRPETK K  ++    R A +DA+
Sbjct: 121 RTRACNSGQFCQRKVCFFAHSPEQLRPETKLKRHYAYRAIRTASIDAM 164

[Close]

BLAST of CSPI04G04180 vs. TrEMBL
Match: T1SFR9_CARPA (PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.4e-58
Identity = 114/208 (54.81%), Postives = 144/208 (69.23%), Query Frame = 1


Query: 29  NLTEKTD--DTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYT 88
           N T+  D  D A++ SDEFRM++YKI+RCPR RSHDWTECPYAHRGEKAQRRDPR+ +Y 
Sbjct: 41  NPTQYNDAIDEAIYGSDEFRMFAYKIKRCPRMRSHDWTECPYAHRGEKAQRRDPRKLSYC 100

Query: 89  AVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 148
           AVACPAFR+G C +G+ C+FAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+P++LR
Sbjct: 101 AVACPAFRNGRCYRGETCDFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPQQLR 160

Query: 149 PETKQKSSFSAHQQRVAVDAIESPPEE-----------KNDGILEIPARV--------SG 208
            ETK K   +   +    D +   P +           +  G +++P +         S 
Sbjct: 161 SETKYKCQVTYRGRMYGGDEVIRRPVQVGSSQGRMLMSRAPGPVKMPMKEEVPGDFLRSL 220

Query: 209 SGRKNERSFGLDVTELELPHIEWISELL 216
           SG K +     D ++L+L H+EWIS+LL
Sbjct: 221 SGLKIKEKGSSDGSDLDLSHLEWISKLL 248

[Close]

BLAST of CSPI04G04180 vs. TrEMBL
Match: A0A061G6X0_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative OS=Theobroma cacao GN=TCM_014841 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.9e-56
Identity = 115/226 (50.88%), Postives = 142/226 (62.83%), Query Frame = 1


Query: 29  NLTEKTD-----DTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQF 88
           NLT++       D A++ SDEFRMY+YKI+RC R RSHDWTECPYAHRGEKAQRRDPR+ 
Sbjct: 22  NLTQRAQYNNAIDEAIYGSDEFRMYAYKIKRCTRMRSHDWTECPYAHRGEKAQRRDPRKV 81

Query: 89  NYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPE 148
            YTA+ACPAFR+G C KGD CEFAHGVFEYWLHPARYRTRACNAG FCQRKVCFFAH+P+
Sbjct: 82  PYTAIACPAFRNGRCQKGDACEFAHGVFEYWLHPARYRTRACNAGTFCQRKVCFFAHTPD 141

Query: 149 ELRPETKQKSSFS---------------------------AHQQRVAVDAIESPPEEKND 208
           +LR E+K K  F+                           AH   V   +  +      +
Sbjct: 142 QLRAESKCKCPFAYKGRMNGGDELLMGIGSGGGEGSTSIQAHDFSVPFASTVNRDCCSFE 201

Query: 209 GILEIPARVSGSGRKNERSF------GLDVTELELPHIEWISELLK 217
           G  +   R+     + E         G +V++ +LPH++WISEL+K
Sbjct: 202 GFSDFLRRLRAFKIREEEERAMRNGGGFEVSDSDLPHLDWISELVK 247

[Close]

BLAST of CSPI04G04180 vs. TrEMBL
Match: A0A067JF50_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26303 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.4e-56
Identity = 106/181 (58.56%), Postives = 131/181 (72.38%), Query Frame = 1


Query: 38  AVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGS 97
           A++ SDEFRMY+YKI+RC R RSHDWTECPYAHRGEKA RRDPR+  Y A+ACP FR+G 
Sbjct: 37  AIYGSDEFRMYAYKIKRCTRTRSHDWTECPYAHRGEKATRRDPRKVPYVAIACPGFRNGK 96

Query: 98  CPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSA 157
           C KGD CE+AHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+PE+LR E K    F  
Sbjct: 97  CHKGDTCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSEKKYACPF-V 156

Query: 158 HQQRVAVDAIESPPEE--KNDGILEIPARVSGSGRKNERSFGLDVTELELPHIEWISELL 217
           ++ R+   + E       + D +L      +    + +   G++ +E EL H++WISEL+
Sbjct: 157 YRARMNGGSEEGSTSSGIRMDELLNSLRNWNIVDEEKKGGGGIEESEGELAHLDWISELV 216

[Close]

BLAST of CSPI04G04180 vs. TrEMBL
Match: Q6V5F9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002521mg PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 116/231 (50.22%), Postives = 141/231 (61.04%), Query Frame = 1


Query: 19  VVSLPELTVGNLTE-----KTDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGE 78
           +VS P +  G + +      T D A++ SDEFRMY+YKI+RCPR RSHDWTECPYAHRGE
Sbjct: 24  IVSKPAIGNGGVYDLDPPIPTIDDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGE 83

Query: 79  KAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQR 138
           KA RRDPR++ Y AVACPAFR+G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQR
Sbjct: 84  KATRRDPRRYTYCAVACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQR 143

Query: 139 KVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILEIPAR---VSGSGR 198
           KVCFFAH+PE+LR       S   H+ R A   + +     N   + +       S S  
Sbjct: 144 KVCFFAHAPEQLR------QSEGKHRCRYAYRPVRARGGNSNGVAMRMDGEDYDTSRSPE 203

Query: 199 KNERSFGLDVTE--------------------------LELPHIEWISELL 216
           K+ +S GLD  E                          L+L H +WISEL+
Sbjct: 204 KSGKSVGLDSNEEKVLLKCWSRMSIVDDHYEPSDFDFDLDLSHFDWISELI 248

[Close]

BLAST of CSPI04G04180 vs. TAIR10
Match: AT5G07500.1 (AT5G07500.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 217.6 bits (553), Expect = 7.4e-57
Identity = 111/210 (52.86%), Postives = 130/210 (61.90%), Query Frame = 1


Query: 36  DTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRS 95
           D A++ SDEFRMY+YKI+RCPR RSHDWTECPYAHRGEKA RRDPR++ Y AVACPAFR+
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSF 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR       S 
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLR------QSE 163

Query: 156 SAHQQRVAVDAIESPPEEKNDGILEIPARVSGSGRKNERS------FGLDVTE------- 215
             H+ R A   + +      DG   +  R+   G    RS        LD  E       
Sbjct: 164 GKHRCRYAYRPVRARGGGNGDG---VTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKC 223

[Close]

BLAST of CSPI04G04180 vs. TAIR10
Match: AT2G25900.1 (AT2G25900.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 181.0 bits (458), Expect = 7.7e-46
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 1


Query: 11  DVYGHEFSVVSLPELTVGNLTEKTDD----TAVFSSDEFRMYSYKIQRCPRNRSHDWTEC 70
           D +   F  +   ELT  + +   D+    T  FSSDEFR+Y +KI+RC R RSHDWTEC
Sbjct: 53  DSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTEC 112

Query: 71  PYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACN 130
           P+AH GEKA+RRDPR+F+Y+  ACP FR GSC +GD CEF+HGVFE WLHP+RYRT+ C 
Sbjct: 113 PFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCK 172

Query: 131 AGRFCQRKVCFFAHSPEELR-------PETKQKSSFSAHQQRVAVDAIESPPEE 174
            G  C+R++CFFAH+ E+LR       P+    S  +     + V    SPP E
Sbjct: 173 DGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSPTSILVSPSFSPPSE 226

[Close]

BLAST of CSPI04G04180 vs. TAIR10
Match: AT4G29190.1 (AT4G29190.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 179.5 bits (454), Expect = 2.2e-45
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 1


Query: 40  FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCP 99
           +S D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

[Close]

BLAST of CSPI04G04180 vs. TAIR10
Match: AT2G19810.1 (AT2G19810.1 CCCH-type zinc finger family protein)

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-44
Identity = 71/107 (66.36%), Postives = 88/107 (82.24%), Query Frame = 1


Query: 40  FSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCP 99
           ++ D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+F+Y+  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           +GD CEF+HGVFE WLHPARYRT+ C  G  C+R+VCFFAHSP+++R
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIR 180

[Close]

BLAST of CSPI04G04180 vs. TAIR10
Match: AT2G41900.1 (AT2G41900.1 CCCH-type zinc finger protein with ARM repeat domain)

HSP 1 Score: 176.0 bits (445), Expect = 2.5e-44
Identity = 71/110 (64.55%), Postives = 90/110 (81.82%), Query Frame = 1


Query: 38  AVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGS 97
           +++++DEFRMYS+K++ C R  SHDWTECP+ H GE A+RRDPR+F+Y+ V CP FR G+
Sbjct: 255 SIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA 314

Query: 98  CPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRP 148
           C +GD CE+AHGVFE WLHPA+YRTR C  G  C R+VCFFAH+PEELRP
Sbjct: 315 CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRP 364

[Close]

BLAST of CSPI04G04180 vs. NCBI nr
Match: gi|449458405|ref|XP_004146938.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus])

HSP 1 Score: 458.0 bits (1177), Expect = 9.3e-126
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180

Query: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 217
           IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK
Sbjct: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216

[Close]

BLAST of CSPI04G04180 vs. NCBI nr
Match: gi|659108959|ref|XP_008454474.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo])

HSP 1 Score: 425.6 bits (1093), Expect = 5.1e-116
Identity = 197/216 (91.20%), Postives = 206/216 (95.37%), Query Frame = 1


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFS VSLPE+TVGNLTEK DDTAVFS+DEFRMYSYKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+FNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETK K + +A +QRVAV A+ESPPEEKNDGILE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180

Query: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 217
           IPAR +G GRKNERSFG DV+ELELPHIEWISELLK
Sbjct: 181 IPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of CSPI04G04180 vs. NCBI nr
Match: gi|702501182|ref|XP_010038410.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis])

HSP 1 Score: 240.4 bits (612), Expect = 3.0e-60
Identity = 119/204 (58.33%), Postives = 138/204 (67.65%), Query Frame = 1


Query: 39  VFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSC 98
           V++SDEFRMY+YK++RCPR RSHDWTECPYAHRGEKAQRRDPR+  Y AVACPAFR GSC
Sbjct: 26  VYNSDEFRMYAYKVKRCPRTRSHDWTECPYAHRGEKAQRRDPRKVRYAAVACPAFRGGSC 85

Query: 99  PKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAH 158
            KG  CEFAHGVFEYWLHPARYRTRACNAG FCQRKVCFFAHSP+ELRPETK K S SAH
Sbjct: 86  LKGSSCEFAHGVFEYWLHPARYRTRACNAGEFCQRKVCFFAHSPDELRPETKYKCSRSAH 145

Query: 159 QQRV-------AVDAIESP--PEEKNDGILEIPARVS------------------GSGRK 216
           + RV       +V    +P  P       +E+  +VS                  G G  
Sbjct: 146 RPRVVEIHGSRSVAPARTPGSPRGNVGSDVEVGDKVSDLLKSPRRLSVRGSDDDDGDGEL 205

[Close]

BLAST of CSPI04G04180 vs. NCBI nr
Match: gi|720062533|ref|XP_010275497.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Nelumbo nucifera])

HSP 1 Score: 236.1 bits (601), Expect = 5.7e-59
Identity = 116/214 (54.21%), Postives = 141/214 (65.89%), Query Frame = 1


Query: 36  DTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRS 95
           D  ++ SDEFRMY++KI+RC RNRSHDWTECPYAHRGEKA+RRDPR+ NY AV CP FRS
Sbjct: 29  DDEMYDSDEFRMYAFKIKRCTRNRSHDWTECPYAHRGEKARRRDPRKINYAAVVCPEFRS 88

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSF 155
           G CPKGD CEFAHGVFE+WLHPA+YRTRACNAG++C+RKVCFFAHSPE+LR ETK K  +
Sbjct: 89  GECPKGDSCEFAHGVFEFWLHPAKYRTRACNAGKYCRRKVCFFAHSPEQLRSETKYKCYY 148

Query: 156 ------------------SAHQQRVAVDAIESPPEEKNDGILEIPARVS----------- 215
                             SA  + + + +   P   KN    EIP+  +           
Sbjct: 149 TYGAPMDRSNFGEGITGASADDREIDITSYNPPVSSKN----EIPSEDNWHFSQSFQKLK 208

Query: 216 ----GSGRKNERSFGLDVTELELPHIEWISELLK 217
               G     ER+FG DV+  +LP I+WISEL+K
Sbjct: 209 IYDHGDDEGRERNFGWDVS--DLPDIDWISELVK 236

[Close]

BLAST of CSPI04G04180 vs. NCBI nr
Match: gi|703147665|ref|XP_010109132.1| (Zinc finger CCCH domain-containing protein 54 [Morus notabilis])

HSP 1 Score: 233.0 bits (593), Expect = 4.8e-58
Identity = 107/168 (63.69%), Postives = 127/168 (75.60%), Query Frame = 1


Query: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60
           M +G    + D   H +    L   T   L ++  + A++ SDEFRMY+YKI+RCPR RS
Sbjct: 1   MLKGINPTVYDFSDHHY----LSAATAAELNDRAVNEAIYGSDEFRMYAYKIKRCPRMRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+ NY A+ CPAFR+G C KGD CEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRKHNYAAIVCPAFRNGGCEKGDACEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVA-VDAI 168
           RTRACN+G+FCQRKVCFFAHSPE+LRPETK K  ++    R A +DA+
Sbjct: 121 RTRACNSGQFCQRKVCFFAHSPEQLRPETKLKRHYAYRAIRTASIDAM 164

The following BLAST results are available for this feature:

BLAST of CSPI04G04180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H54_ARATH	1.3e-55	52.86	Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE...	[more]
C3H23_ARATH	1.4e-44	50.00	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g259...	[more]
C3H49_ARATH	4.0e-44	69.16	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g291...	[more]
C3H2_ORYSJ	4.0e-44	55.71	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=...	[more]
C3H35_ORYSJ	2.0e-43	56.74	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN...	[more]

BLAST of CSPI04G04180 vs. TrEMBL


Match Name	E-value	Identity	Description
W9SQQ1_9ROSA	3.4e-58	63.69	Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 ...	[more]
T1SFR9_CARPA	4.4e-58	54.81	PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1	[more]
A0A061G6X0_THECC	1.9e-56	50.88	Zinc finger C-x8-C-x5-C-x3-H type family protein, putative OS=Theobroma cacao GN...	[more]
A0A067JF50_JATCU	5.4e-56	58.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26303 PE=4 SV=1	[more]
Q6V5F9_9BRAS	1.2e-55	50.22	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002521mg PE=4 SV=1	[more]

BLAST of CSPI04G04180 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07500.1	7.4e-57	52.86	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	7.7e-46	50.00	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	2.2e-45	69.16	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G19810.1	1.5e-44	66.36	CCCH-type zinc finger family protein	[more]
AT2G41900.1	2.5e-44	64.55	CCCH-type zinc finger protein with ARM repeat domain	[more]

BLAST of CSPI04G04180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458405\|ref\|XP_004146938.1\|	9.3e-126	100.00	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus]	[more]
gi\|659108959\|ref\|XP_008454474.1\|	5.1e-116	91.20	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo]	[more]
gi\|702501182\|ref\|XP_010038410.1\|	3.0e-60	58.33	PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis]	[more]
gi\|720062533\|ref\|XP_010275497.1\|	5.7e-59	54.21	PREDICTED: zinc finger CCCH domain-containing protein 54 [Nelumbo nucifera]	[more]
gi\|703147665\|ref\|XP_010109132.1\|	4.8e-58	63.69	Zinc finger CCCH domain-containing protein 54 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G04180.1	CSPI04G04180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 84..112 score: 1.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 88..109 score: 1.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 84..110 score: 1.2E-5coord: 119..142 score:
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 84..111 score: 13
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 83..114 score: 4.5
None	No IPR available	PANTHER	PTHR14493	UNCHARACTERIZED	coord: 39..149 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G04180	Cla010708	Watermelon (97103) v1	cpiwmB315
CSPI04G04180	MELO3C017641	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G04180	ClCG07G017030	Watermelon (Charleston Gray)	cpiwcgB336
CSPI04G04180	Lsi07G001210	Bottle gourd (USVL1VR-Ls)	cpilsiB303
CSPI04G04180	MELO3C017641.2	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G04180	CsaV3_4G004250	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G04180	Cla97C07G144080	Watermelon (97103) v2	cpiwmbB326
CSPI04G04180	Bhi01G002001	Wax gourd	cpiwgoB378
CSPI04G04180	Cucsa.094060	Cucumber (Gy14) v1	cgycpiB103
CSPI04G04180	CmaCh16G002210	Cucurbita maxima (Rimu)	cmacpiB337
CSPI04G04180	CmoCh16G002390	Cucurbita moschata (Rifu)	cmocpiB328
CSPI04G04180	CsGy4G004090	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G04180	Carg16762	Silver-seed gourd	carcpiB0906

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G04180	Bottle gourd (USVL1VR-Ls)	cpilsiB243
CSPI04G04180	Cucumber (Gy14) v2	cgybcpiB222
CSPI04G04180	Silver-seed gourd	carcpiB0408
CSPI04G04180	Silver-seed gourd	carcpiB0746
CSPI04G04180	Cucumber (Chinese Long) v3	cpicucB234
CSPI04G04180	Watermelon (97103) v2	cpiwmbB274
CSPI04G04180	Wild cucumber (PI 183967)	cpicpiB156
CSPI04G04180	Cucurbita maxima (Rimu)	cmacpiB716
CSPI04G04180	Cucurbita moschata (Rifu)	cmocpiB604
CSPI04G04180	Cucurbita moschata (Rifu)	cmocpiB708
CSPI04G04180	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G04180	Cucumber (Chinese Long) v2	cpicuB194
CSPI04G04180	Watermelon (Charleston Gray)	cpiwcgB298
CSPI04G04180	Cucurbita pepo (Zucchini)	cpecpiB220
CSPI04G04180	Cucurbita pepo (Zucchini)	cpecpiB398
CSPI04G04180	Cucurbita pepo (Zucchini)	cpecpiB731