CmaCh16G002210 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G002210
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionZinc finger transcription factor
LocationCma_Chr16 : 1001423 .. 1002079 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCACGAATTCACCGCCGTGGCGCTACCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCAATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGGACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAAAACAAGCTTCATTTTGCTGCTCCCGTGGAGCGTGCGGCGCTGGCCGCACTTAAATATCCAGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCTGAGTTGGAGGCGTCGGAATCCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA

mRNA sequence

ATGTTTCAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCACGAATTCACCGCCGTGGCGCTACCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCAATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGGACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAAAACAAGCTTCATTTTGCTGCTCCCGTGGAGCGTGCGGCGCTGGCCGCACTTAAATATCCAGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCTGAGTTGGAGGCGTCGGAATCCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA

Coding sequence (CDS)

ATGTTTCAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCACGAATTCACCGCCGTGGCGCTACCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCAATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGGACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAAAACAAGCTTCATTTTGCTGCTCCCGTGGAGCGTGCGGCGCTGGCCGCACTTAAATATCCAGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCTGAGTTGGAGGCGTCGGAATCCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA

Protein sequence

MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGVSEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ
Homology
[Close]
BLAST of CmaCh16G002210 vs. Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.9e-55
Identity = 110/201 (54.73%), Postives = 132/201 (65.67%), Query Frame = 1 

Query: 38  DTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT 97
           D A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR 
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 98  GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR-PETKNKLH 157
           G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE+LR  E K++  
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCR 163

Query: 158 FAAPVERAALAALKYPVERKND----GVSEIPVKEISDGLGNERSSEL------------ 217
           +A    RA        V  + D      S  PV+   D L +     L            
Sbjct: 164 YAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKCWSRMSIVDD 223

[Close]
BLAST of CmaCh16G002210 vs. Swiss-Prot
Match: C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-44
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 39  TALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTG 98
           T  F+SDEFR+Y FKI+RC + RSHDWTECP+AH GEKA+RRDPR+F+YS  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 99  SCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]
BLAST of CmaCh16G002210 vs. Swiss-Prot
Match: C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-44
Identity = 78/138 (56.52%), Postives = 96/138 (69.57%), Query Frame = 1 

Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           ++ D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+++YS  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR------PETKNKL 161
           KGD CEFAHGVFE WLHP RYRT+ C  G  C RK+CFFAHSP++LR      P+  +  
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRSPDRVDSF 194

Query: 162 HFAAPVERAALAALKYPV 174
             ++P+   A      PV
Sbjct: 195 DVSSPIRARAFQLSISPV 212

[Close]
BLAST of CmaCh16G002210 vs. Swiss-Prot
Match: C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 84/174 (48.28%), Postives = 111/174 (63.79%), Query Frame = 1 

Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           +  D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+F+YS  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR------PETKNKL 161
           +GD CEF+HGVFE WLHP RYRT+ C  G  C+R+VCFFAHSP+++R      P+  +  
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDRVDSF 193

Query: 162 HFAAPVERAAL------AALKYPVERKNDGVSEIPVKEISDGLGNERSSELEAS 204
              +P  R A       ++   PV  + D  S   +  +S  LG+   +++ AS
Sbjct: 194 DVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSL--LSRSLGSNLGNDVVAS 245

[Close]
BLAST of CmaCh16G002210 vs. Swiss-Prot
Match: C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.4e-43
Identity = 72/104 (69.23%), Postives = 85/104 (81.73%), Query Frame = 1 

Query: 45  DEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGD 104
           DEFRMY FK++RC + RSHDWTECP+AH GEKA+RRDPRR+ YS  ACP FR G C +GD
Sbjct: 76  DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCKRGD 135

Query: 105 FCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
            CEFAHGVFE WLHP RYRT+ C  G  C+R+VCFFAH+P++LR
Sbjct: 136 ACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLR 179

[Close]
BLAST of CmaCh16G002210 vs. TrEMBL
Match: W9SQQ1_9ROSA (Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 112/208 (53.85%), Postives = 138/208 (66.35%), Query Frame = 1 

Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           M +G    + D   H + + A          L  +  + A++ SDEFRMYA+KI+RCP+ 
Sbjct: 1   MLKGINPTVYDFSDHHYLSAATA------AELNDRAVNEAIYGSDEFRMYAYKIKRCPRM 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPR+ NY+A+ CPAFR G C KGD CEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRKHNYAAIVCPAFRNGGCEKGDACEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACN+G+FCQRKVCFFAHSPE+LRPETK K H+A    R A            D +
Sbjct: 121 RYRTRACNSGQFCQRKVCFFAHSPEQLRPETKLKRHYAYRAIRTA----------SIDAM 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELP 209
           ++I  K IS   G+  ++   +S S  P
Sbjct: 181 NDINKKFISTNGGDGSAATSSSSSSPSP 192

[Close]
BLAST of CmaCh16G002210 vs. TrEMBL
Match: A0A067JF50_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26303 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-55
Identity = 112/207 (54.11%), Postives = 140/207 (67.63%), Query Frame = 1 

Query: 24  EFAYRNTRLTPQTNDT---ALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRR 83
           ++A+    +TP   D    A++ SDEFRMYA+KI+RC ++RSHDWTECPYAHRGEKA RR
Sbjct: 18  DYAFSGLNVTPPHYDNIHDAIYGSDEFRMYAYKIKRCTRTRSHDWTECPYAHRGEKATRR 77

Query: 84  DPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFF 143
           DPR+  Y A+ACP FR G C KGD CE+AHGVFE+WLHP RYRTRACNAGRFCQRKVCFF
Sbjct: 78  DPRKVPYVAIACPGFRNGKCHKGDTCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFF 137

Query: 144 AHSPEELRPETKNKLHFAAP-VERAALAALKYPVERKNDGVSEIPVKEISDGLGN----- 203
           AH+PE+LR E K    +A P V RA +         +    S I + E+ + L N     
Sbjct: 138 AHTPEQLRSEKK----YACPFVYRARMNG----GSEEGSTSSGIRMDELLNSLRNWNIVD 197

Query: 204 ---ERSSELEASESELPHIEWISELLQ 219
              +    +E SE EL H++WISEL++
Sbjct: 198 EEKKGGGGIEESEGELAHLDWISELVK 216

[Close]
BLAST of CmaCh16G002210 vs. TrEMBL
Match: T1SFR9_CARPA (PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 7.8e-55
Identity = 107/199 (53.77%), Postives = 135/199 (67.84%), Query Frame = 1 

Query: 38  DTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT 97
           D A++ SDEFRM+A+KI+RCP+ RSHDWTECPYAHRGEKAQRRDPR+ +Y AVACPAFR 
Sbjct: 50  DEAIYGSDEFRMFAYKIKRCPRMRSHDWTECPYAHRGEKAQRRDPRKLSYCAVACPAFRN 109

Query: 98  GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHF 157
           G C +G+ C+FAHGVFE+WLHP RYRTRACNAGRFCQRKVCFFAH+P++LR ETK K   
Sbjct: 110 GRCYRGETCDFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPQQLRSETKYKCQV 169

Query: 158 AAPVER-AALAALKYPVE----------RKNDGVSEIPVKE--------ISDGLGNERSS 217
                       ++ PV+           +  G  ++P+KE           GL  +   
Sbjct: 170 TYRGRMYGGDEVIRRPVQVGSSQGRMLMSRAPGPVKMPMKEEVPGDFLRSLSGLKIKEKG 229

[Close]
BLAST of CmaCh16G002210 vs. TrEMBL
Match: Q6WER2_ARALL (Zing finger transcription factor PEI1 OS=Arabidopsis lyrata subsp. lyrata GN=PEI1 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.1e-54
Identity = 111/201 (55.22%), Postives = 133/201 (66.17%), Query Frame = 1 

Query: 38  DTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT 97
           D A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR 
Sbjct: 45  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 104

Query: 98  GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR-PETKNKLH 157
           G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE+LR  E K++  
Sbjct: 105 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCR 164

Query: 158 FAAPVERAALAALKYPVERKNDG----VSEIPVKEISDGLGNERSSEL------------ 217
           +A    RA        V  + DG     S  PV+   D L +     L            
Sbjct: 165 YAYRPVRARGGGNGDGVAMRMDGEDYDTSRSPVRSGKDDLDSNEEKVLLKCWSRMSIVDD 224

[Close]
BLAST of CmaCh16G002210 vs. TrEMBL
Match: Q6V5E1_OLIPU (Zn-finger transcription factor OS=Olimarabidopsis pumila GN=Op_7500 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.6e-54
Identity = 112/204 (54.90%), Postives = 136/204 (66.67%), Query Frame = 1 

Query: 36  TNDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAF 95
           T D A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAF
Sbjct: 42  TIDDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAF 101

Query: 96  RTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR-PETKNK 155
           R G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE+LR  E K++
Sbjct: 102 RNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHR 161

Query: 156 LHFA-APVERAA--LAALKYPVERKNDGVSEIPVKEISDGLGNERSSEL----------- 215
             +A  PV        A+   +E ++   S  P K    GL +     L           
Sbjct: 162 CRYAYRPVRTRGGNSDAMAVRMEGEDYDTSRSPEKSGKGGLDSNEEKVLFKCWSRMNIVD 221

Query: 216 ---EAS----ESELPHIEWISELL 218
              E S    + +L HI+WISEL+
Sbjct: 222 DHYEPSDLDLDLDLSHIDWISELV 245

[Close]
BLAST of CmaCh16G002210 vs. TAIR10
Match: AT5G07500.1 (AT5G07500.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 216.5 bits (550), Expect = 1.7e-56
Identity = 110/201 (54.73%), Postives = 132/201 (65.67%), Query Frame = 1 

Query: 38  DTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT 97
           D A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR 
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 98  GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR-PETKNKLH 157
           G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE+LR  E K++  
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCR 163

Query: 158 FAAPVERAALAALKYPVERKND----GVSEIPVKEISDGLGNERSSEL------------ 217
           +A    RA        V  + D      S  PV+   D L +     L            
Sbjct: 164 YAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKCWSRMSIVDD 223

[Close]
BLAST of CmaCh16G002210 vs. TAIR10
Match: AT2G25900.1 (AT2G25900.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 179.5 bits (454), Expect = 2.3e-45
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 39  TALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTG 98
           T  F+SDEFR+Y FKI+RC + RSHDWTECP+AH GEKA+RRDPR+F+YS  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 99  SCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]
BLAST of CmaCh16G002210 vs. TAIR10
Match: AT4G29190.1 (AT4G29190.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 179.5 bits (454), Expect = 2.3e-45
Identity = 78/138 (56.52%), Postives = 96/138 (69.57%), Query Frame = 1 

Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           ++ D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+++YS  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR------PETKNKL 161
           KGD CEFAHGVFE WLHP RYRT+ C  G  C RK+CFFAHSP++LR      P+  +  
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRSPDRVDSF 194

Query: 162 HFAAPVERAALAALKYPV 174
             ++P+   A      PV
Sbjct: 195 DVSSPIRARAFQLSISPV 212

[Close]
BLAST of CmaCh16G002210 vs. TAIR10
Match: AT2G19810.1 (AT2G19810.1 CCCH-type zinc finger family protein)

HSP 1 Score: 177.9 bits (450), Expect = 6.6e-45
Identity = 84/174 (48.28%), Postives = 111/174 (63.79%), Query Frame = 1 

Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           +  D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+F+YS  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR------PETKNKL 161
           +GD CEF+HGVFE WLHP RYRT+ C  G  C+R+VCFFAHSP+++R      P+  +  
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDRVDSF 193

Query: 162 HFAAPVERAAL------AALKYPVERKNDGVSEIPVKEISDGLGNERSSELEAS 204
              +P  R A       ++   PV  + D  S   +  +S  LG+   +++ AS
Sbjct: 194 DVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSL--LSRSLGSNLGNDVVAS 245

[Close]
BLAST of CmaCh16G002210 vs. TAIR10
Match: AT1G03790.1 (AT1G03790.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 174.9 bits (442), Expect = 5.5e-44
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT-GSC 101
           + SD FRM+ FKI+RC +SRSHDWT+CP+AH GEKA+RRDPRRF YS   CP FR  G C
Sbjct: 78  YASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDC 137

Query: 102 PKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
            +GD CEFAHGVFE WLHP RYRT AC  G+ C+RKVCFFAHSP +LR
Sbjct: 138 SRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLR 185

[Close]
BLAST of CmaCh16G002210 vs. NCBI nr
Match: gi|659108959|ref|XP_008454474.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo])

HSP 1 Score: 355.5 bits (911), Expect = 6.5e-95
Identity = 164/218 (75.23%), Postives = 188/218 (86.24%), Query Frame = 1 

Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           MFQGFVFGINDVYGHEF+AV+LPE    N  LT + +DTA+F++DEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGN--LTEKVDDTAVFSTDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK+K +  A  +R A+AA++ P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGI 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 219
            EIP +E   G  NERS   + SE ELPHIEWISELL+
Sbjct: 181 LEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

[Close]
BLAST of CmaCh16G002210 vs. NCBI nr
Match: gi|449458405|ref|XP_004146938.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus])

HSP 1 Score: 354.0 bits (907), Expect = 1.9e-94
Identity = 163/218 (74.77%), Postives = 187/218 (85.78%), Query Frame = 1 

Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           MFQGFVFGINDVYGHEF+ V+LPE    N  LT +T+DTA+F+SDEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGN--LTEKTDDTAVFSSDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPR+FNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K  F+A  +R A+ A++ P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGI 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 219
            EIP +    G  NERS  L+ +E ELPHIEWISELL+
Sbjct: 181 LEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216

[Close]
BLAST of CmaCh16G002210 vs. NCBI nr
Match: gi|703147665|ref|XP_010109132.1| (Zinc finger CCCH domain-containing protein 54 [Morus notabilis])

HSP 1 Score: 230.3 bits (586), Expect = 3.2e-57
Identity = 112/208 (53.85%), Postives = 138/208 (66.35%), Query Frame = 1 

Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           M +G    + D   H + + A          L  +  + A++ SDEFRMYA+KI+RCP+ 
Sbjct: 1   MLKGINPTVYDFSDHHYLSAATA------AELNDRAVNEAIYGSDEFRMYAYKIKRCPRM 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPR+ NY+A+ CPAFR G C KGD CEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRKHNYAAIVCPAFRNGGCEKGDACEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACN+G+FCQRKVCFFAHSPE+LRPETK K H+A    R A            D +
Sbjct: 121 RYRTRACNSGQFCQRKVCFFAHSPEQLRPETKLKRHYAYRAIRTA----------SIDAM 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELP 209
           ++I  K IS   G+  ++   +S S  P
Sbjct: 181 NDINKKFISTNGGDGSAATSSSSSSPSP 192

[Close]
BLAST of CmaCh16G002210 vs. NCBI nr
Match: gi|720062533|ref|XP_010275497.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Nelumbo nucifera])

HSP 1 Score: 226.9 bits (577), Expect = 3.5e-56
Identity = 114/210 (54.29%), Postives = 144/210 (68.57%), Query Frame = 1 

Query: 38  DTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT 97
           D  +++SDEFRMYAFKI+RC ++RSHDWTECPYAHRGEKA+RRDPR+ NY+AV CP FR+
Sbjct: 29  DDEMYDSDEFRMYAFKIKRCTRNRSHDWTECPYAHRGEKARRRDPRKINYAAVVCPEFRS 88

Query: 98  GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLH- 157
           G CPKGD CEFAHGVFEFWLHP +YRTRACNAG++C+RKVCFFAHSPE+LR ETK K + 
Sbjct: 89  GECPKGDSCEFAHGVFEFWLHPAKYRTRACNAGKYCRRKVCFFAHSPEQLRSETKYKCYY 148

Query: 158 -FAAPVER---------AALAALKYPVERKNDGVS---EIPVKE---------------I 217
            + AP++R         A+    +  +   N  VS   EIP ++                
Sbjct: 149 TYGAPMDRSNFGEGITGASADDREIDITSYNPPVSSKNEIPSEDNWHFSQSFQKLKIYDH 208

Query: 218 SDGLGNERSSELEASESELPHIEWISELLQ 219
            D  G ER+   +   S+LP I+WISEL++
Sbjct: 209 GDDEGRERNFGWDV--SDLPDIDWISELVK 236

[Close]
BLAST of CmaCh16G002210 vs. NCBI nr
Match: gi|702501182|ref|XP_010038410.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis])

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-55
Identity = 111/204 (54.41%), Postives = 139/204 (68.14%), Query Frame = 1 

Query: 41  LFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSC 100
           ++NSDEFRMYA+K++RCP++RSHDWTECPYAHRGEKAQRRDPR+  Y+AVACPAFR GSC
Sbjct: 26  VYNSDEFRMYAYKVKRCPRTRSHDWTECPYAHRGEKAQRRDPRKVRYAAVACPAFRGGSC 85

Query: 101 PKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAP 160
            KG  CEFAHGVFE+WLHP RYRTRACNAG FCQRKVCFFAHSP+ELRPETK K   +A 
Sbjct: 86  LKGSSCEFAHGVFEYWLHPARYRTRACNAGEFCQRKVCFFAHSPDELRPETKYKCSRSAH 145

Query: 161 VERA-------ALAALKYPVERKNDGVSEIPV-KEISDGLGNERSSELEASES------- 218
             R        ++A  + P   + +  S++ V  ++SD L + R   +  S+        
Sbjct: 146 RPRVVEIHGSRSVAPARTPGSPRGNVGSDVEVGDKVSDLLKSPRRLSVRGSDDDDGDGEL 205

The following BLAST results are available for this feature:
BLAST of CmaCh16G002210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H54_ARATH2.9e-5554.73Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE... [more]
C3H23_ARATH4.0e-4467.27Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g259... [more]
C3H49_ARATH4.0e-4456.52Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g291... [more]
C3H20_ARATH1.2e-4348.28Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g198... [more]
C3H35_ORYSJ4.4e-4369.23Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN... [more]
BLAST of CmaCh16G002210 vs. TrEMBL
Match NameE-valueIdentityDescription
W9SQQ1_9ROSA2.2e-5753.85Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 ... [more]
A0A067JF50_JATCU2.7e-5554.11Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26303 PE=4 SV=1[more]
T1SFR9_CARPA7.8e-5553.77PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1[more]
Q6WER2_ARALL5.1e-5455.22Zing finger transcription factor PEI1 OS=Arabidopsis lyrata subsp. lyrata GN=PEI... [more]
Q6V5E1_OLIPU6.6e-5454.90Zn-finger transcription factor OS=Olimarabidopsis pumila GN=Op_7500 PE=4 SV=1[more]
BLAST of CmaCh16G002210 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07500.11.7e-5654.73 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT2G25900.12.3e-4567.27 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT4G29190.12.3e-4556.52 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT2G19810.16.6e-4548.28 CCCH-type zinc finger family protein[more]
AT1G03790.15.5e-4469.44 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of CmaCh16G002210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108959|ref|XP_008454474.1|6.5e-9575.23PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo][more]
gi|449458405|ref|XP_004146938.1|1.9e-9474.77PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus][more]
gi|703147665|ref|XP_010109132.1|3.2e-5753.85Zinc finger CCCH domain-containing protein 54 [Morus notabilis][more]
gi|720062533|ref|XP_010275497.1|3.5e-5654.29PREDICTED: zinc finger CCCH domain-containing protein 54 [Nelumbo nucifera][more]
gi|702501182|ref|XP_010038410.1|1.3e-5554.41PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G002210.1CmaCh16G002210.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 91..114
score: 1.
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 91..111
score: 4.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 121..144
score: 13.0coord: 86..112
score: 6.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 86..113
score: 13
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 85..116
score: 2.6
NoneNo IPR availablePANTHERPTHR14493UNCHARACTERIZEDcoord: 41..153
score: 6.0