CmoCh16G002390 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G002390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc finger CCCH domain-containing protein 54
Location	Cmo_Chr16 : 1052957 .. 1053613 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCATGAATTCACCGCCGTGGCGCTGCCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCGATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGAACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAACTCAAGCTTCATTTTGATGCTCCCGTGGCGCGTGCAGCGCTGGCCGCACTTGAATATCCCGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCGGAGTTGGAGGCGTCAGAATTCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA

mRNA sequence

ATGTTACAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCATGAATTCACCGCCGTGGCGCTGCCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCGATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGAACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAACTCAAGCTTCATTTTGATGCTCCCGTGGCGCGTGCAGCGCTGGCCGCACTTGAATATCCCGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCGGAGTTGGAGGCGTCAGAATTCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA

Coding sequence (CDS)

ATGTTACAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCATGAATTCACCGCCGTGGCGCTGCCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCGATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGAACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAACTCAAGCTTCATTTTGATGCTCCCGTGGCGCGTGCAGCGCTGGCCGCACTTGAATATCCCGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCGGAGTTGGAGGCGTCAGAATTCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA

Homology

[Close]

BLAST of CmoCh16G002390 vs. Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.9e-55
Identity = 113/213 (53.05%), Postives = 134/213 (62.91%), Query Frame = 1


Query: 26  AYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRF 85
           AY      P  DD A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+
Sbjct: 33  AYEIDPSIPNIDD-AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRY 92

Query: 86  NYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPE 145
            Y AVACPAFR G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE
Sbjct: 93  TYCAVACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPE 152

Query: 146 ELR-PETKLKLHFDAPVARAALAALEYPVERKND----GVSEIPVKEISDGLGNERSSEL 205
           +LR  E K +  +     RA        V  + D      S  PV+   D L +     L
Sbjct: 153 QLRQSEGKHRCRYAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVL 212

Query: 206 --------------EAS--EFELPHIEWISELL 218
                         E S  + +L H +WISEL+
Sbjct: 213 LKCWSRMSIVDDHYEPSDLDLDLSHFDWISELV 244

[Close]

BLAST of CmoCh16G002390 vs. Swiss-Prot
Match: C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-44
Identity = 76/116 (65.52%), Postives = 94/116 (81.03%), Query Frame = 1


Query: 33  TPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVAC 92
           +P TD    F+SDEFR+Y FKI+RC + RSHDWTECP+AH GEKA+RRDPR+F+YS  AC
Sbjct: 80  SPLTDS---FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTAC 139

Query: 93  PAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           P FR GSC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 140 PEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of CmoCh16G002390 vs. Swiss-Prot
Match: C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 1


Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           ++ D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+++YS  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           KGD CEFAHGVFE WLHP RYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

[Close]

BLAST of CmoCh16G002390 vs. Swiss-Prot
Match: C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.4e-43
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 1


Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           +  D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+F+YS  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           +GD CEF+HGVFE WLHP RYRT+ C  G  C+R+VCFFAHSP+++R
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIR 180

[Close]

BLAST of CmoCh16G002390 vs. Swiss-Prot
Match: C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.4e-43
Identity = 72/104 (69.23%), Postives = 85/104 (81.73%), Query Frame = 1


Query: 45  DEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGD 104
           DEFRMY FK++RC + RSHDWTECP+AH GEKA+RRDPRR+ YS  ACP FR G C +GD
Sbjct: 76  DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCKRGD 135

Query: 105 FCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
            CEFAHGVFE WLHP RYRT+ C  G  C+R+VCFFAH+P++LR
Sbjct: 136 ACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLR 179

[Close]

BLAST of CmoCh16G002390 vs. TrEMBL
Match: W9SQQ1_9ROSA (Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.8e-58
Identity = 112/208 (53.85%), Postives = 138/208 (66.35%), Query Frame = 1


Query: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60
           ML+G    + D   H + + A          L  +  + A++ SDEFRMYA+KI+RCP+ 
Sbjct: 1   MLKGINPTVYDFSDHHYLSAATA------AELNDRAVNEAIYGSDEFRMYAYKIKRCPRM 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPR+ NY+A+ CPAFR G C KGD CEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRKHNYAAIVCPAFRNGGCEKGDACEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180
           RYRTRACN+G+FCQRKVCFFAHSPE+LRPETKLK H+     R A            D +
Sbjct: 121 RYRTRACNSGQFCQRKVCFFAHSPEQLRPETKLKRHYAYRAIRTA----------SIDAM 180

Query: 181 SEIPVKEISDGLGNERSSELEASEFELP 209
           ++I  K IS   G+  ++   +S    P
Sbjct: 181 NDINKKFISTNGGDGSAATSSSSSSPSP 192

[Close]

BLAST of CmoCh16G002390 vs. TrEMBL
Match: T1SFR9_CARPA (PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-55
Identity = 107/199 (53.77%), Postives = 134/199 (67.34%), Query Frame = 1


Query: 38  DTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT 97
           D A++ SDEFRM+A+KI+RCP+ RSHDWTECPYAHRGEKAQRRDPR+ +Y AVACPAFR 
Sbjct: 50  DEAIYGSDEFRMFAYKIKRCPRMRSHDWTECPYAHRGEKAQRRDPRKLSYCAVACPAFRN 109

Query: 98  GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHF 157
           G C +G+ C+FAHGVFE+WLHP RYRTRACNAGRFCQRKVCFFAH+P++LR ETK K   
Sbjct: 110 GRCYRGETCDFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPQQLRSETKYKCQV 169

Query: 158 ---------DAPVARAALAALEY--PVERKNDGVSEIPVKE--------ISDGLGNERSS 217
                    D  + R           +  +  G  ++P+KE           GL  +   
Sbjct: 170 TYRGRMYGGDEVIRRPVQVGSSQGRMLMSRAPGPVKMPMKEEVPGDFLRSLSGLKIKEKG 229

[Close]

BLAST of CmoCh16G002390 vs. TrEMBL
Match: A0A067JF50_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26303 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-55
Identity = 111/206 (53.88%), Postives = 138/206 (66.99%), Query Frame = 1


Query: 24  EFAYRNTRLTPQTDDT---ALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRR 83
           ++A+    +TP   D    A++ SDEFRMYA+KI+RC ++RSHDWTECPYAHRGEKA RR
Sbjct: 18  DYAFSGLNVTPPHYDNIHDAIYGSDEFRMYAYKIKRCTRTRSHDWTECPYAHRGEKATRR 77

Query: 84  DPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFF 143
           DPR+  Y A+ACP FR G C KGD CE+AHGVFE+WLHP RYRTRACNAGRFCQRKVCFF
Sbjct: 78  DPRKVPYVAIACPGFRNGKCHKGDTCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFF 137

Query: 144 AHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGVSEIPVKEISDGLGN------ 203
           AH+PE+LR E K    F   V RA +         +    S I + E+ + L N      
Sbjct: 138 AHTPEQLRSEKKYACPF---VYRARMNG----GSEEGSTSSGIRMDELLNSLRNWNIVDE 197

Query: 204 --ERSSELEASEFELPHIEWISELLQ 219
             +    +E SE EL H++WISEL++
Sbjct: 198 EKKGGGGIEESEGELAHLDWISELVK 216

[Close]

BLAST of CmoCh16G002390 vs. TrEMBL
Match: Q6WER2_ARALL (Zing finger transcription factor PEI1 OS=Arabidopsis lyrata subsp. lyrata GN=PEI1 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.6e-54
Identity = 114/213 (53.52%), Postives = 135/213 (63.38%), Query Frame = 1


Query: 26  AYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRF 85
           AY      P  DD A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+
Sbjct: 34  AYEIDPPIPNIDD-AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRY 93

Query: 86  NYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPE 145
            Y AVACPAFR G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE
Sbjct: 94  TYCAVACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPE 153

Query: 146 ELR-PETKLKLHFDAPVARAALAALEYPVERKNDG----VSEIPVKEISDGLGNERSSEL 205
           +LR  E K +  +     RA        V  + DG     S  PV+   D L +     L
Sbjct: 154 QLRQSEGKHRCRYAYRPVRARGGGNGDGVAMRMDGEDYDTSRSPVRSGKDDLDSNEEKVL 213

Query: 206 --------------EAS--EFELPHIEWISELL 218
                         E S  + +L H +WISEL+
Sbjct: 214 LKCWSRMSIVDDHYEPSDLDLDLSHFDWISELV 245

[Close]

BLAST of CmoCh16G002390 vs. TrEMBL
Match: Q6V5C7_ARAAE (Zn-finger transcription factor OS=Arabidopsis arenosa GN=Aa1_7500 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53
Identity = 114/215 (53.02%), Postives = 135/215 (62.79%), Query Frame = 1


Query: 26  AYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRF 85
           AY      P  DD A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+
Sbjct: 33  AYEIDPPIPNIDD-AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRY 92

Query: 86  NYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPE 145
            Y AVACPAFR G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE
Sbjct: 93  TYCAVACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPE 152

Query: 146 ELR-PETKLKLHFDAPVARAALAALEYPVERKNDG----VSEIPVKEISDGLGNERSSEL 205
           +LR  E K +  +     RA        V  + DG     S  PV+   D L +     L
Sbjct: 153 QLRQSEGKHRCRYAYRPVRARGGGNGDGVAMRMDGEDYDTSRSPVRSGKDDLDSNEEKVL 212

Query: 206 --------------EAS----EFELPHIEWISELL 218
                         E S    + +L H +WISEL+
Sbjct: 213 LKCWSRMSIMDDHYEPSDLDLDLDLSHFDWISELV 246

[Close]

BLAST of CmoCh16G002390 vs. TAIR10
Match: AT5G07500.1 (AT5G07500.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 216.5 bits (550), Expect = 1.7e-56
Identity = 113/213 (53.05%), Postives = 134/213 (62.91%), Query Frame = 1


Query: 26  AYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRF 85
           AY      P  DD A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+
Sbjct: 33  AYEIDPSIPNIDD-AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRY 92

Query: 86  NYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPE 145
            Y AVACPAFR G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE
Sbjct: 93  TYCAVACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPE 152

Query: 146 ELR-PETKLKLHFDAPVARAALAALEYPVERKND----GVSEIPVKEISDGLGNERSSEL 205
           +LR  E K +  +     RA        V  + D      S  PV+   D L +     L
Sbjct: 153 QLRQSEGKHRCRYAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVL 212

Query: 206 --------------EAS--EFELPHIEWISELL 218
                         E S  + +L H +WISEL+
Sbjct: 213 LKCWSRMSIVDDHYEPSDLDLDLSHFDWISELV 244

[Close]

BLAST of CmoCh16G002390 vs. TAIR10
Match: AT2G25900.1 (AT2G25900.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-45
Identity = 76/116 (65.52%), Postives = 94/116 (81.03%), Query Frame = 1


Query: 33  TPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVAC 92
           +P TD    F+SDEFR+Y FKI+RC + RSHDWTECP+AH GEKA+RRDPR+F+YS  AC
Sbjct: 80  SPLTDS---FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTAC 139

Query: 93  PAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           P FR GSC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 140 PEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of CmoCh16G002390 vs. TAIR10
Match: AT4G29190.1 (AT4G29190.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 177.9 bits (450), Expect = 6.6e-45
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 1


Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           ++ D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+++YS  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           KGD CEFAHGVFE WLHP RYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

[Close]

BLAST of CmoCh16G002390 vs. TAIR10
Match: AT2G19810.1 (AT2G19810.1 CCCH-type zinc finger family protein)

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-44
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 1


Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           +  D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+F+YS  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           +GD CEF+HGVFE WLHP RYRT+ C  G  C+R+VCFFAHSP+++R
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIR 180

[Close]

BLAST of CmoCh16G002390 vs. TAIR10
Match: AT1G03790.1 (AT1G03790.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 175.6 bits (444), Expect = 3.3e-44
Identity = 76/114 (66.67%), Postives = 88/114 (77.19%), Query Frame = 1


Query: 36  TDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAF 95
           +D    + SD FRM+ FKI+RC +SRSHDWT+CP+AH GEKA+RRDPRRF YS   CP F
Sbjct: 72  SDSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEF 131

Query: 96  RT-GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           R  G C +GD CEFAHGVFE WLHP RYRT AC  G+ C+RKVCFFAHSP +LR
Sbjct: 132 RRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLR 185

[Close]

BLAST of CmoCh16G002390 vs. NCBI nr
Match: gi|659108959|ref|XP_008454474.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo])

HSP 1 Score: 357.5 bits (916), Expect = 1.7e-95
Identity = 165/218 (75.69%), Postives = 186/218 (85.32%), Query Frame = 1


Query: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60
           M QGFVFGINDVYGHEF+AV+LPE    N  LT + DDTA+F++DEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGN--LTEKVDDTAVFSTDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K + +A   R A+AA+E P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGI 180

Query: 181 SEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 219
            EIP +E   G  NERS   + SE ELPHIEWISELL+
Sbjct: 181 LEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of CmoCh16G002390 vs. NCBI nr
Match: gi|449458405|ref|XP_004146938.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus])

HSP 1 Score: 355.1 bits (910), Expect = 8.5e-95
Identity = 164/218 (75.23%), Postives = 184/218 (84.40%), Query Frame = 1


Query: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60
           M QGFVFGINDVYGHEF+ V+LPE    N  LT +TDDTA+F+SDEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGN--LTEKTDDTAVFSSDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPR+FNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K  F A   R A+ A+E P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGI 180

Query: 181 SEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 219
            EIP +    G  NERS  L+ +E ELPHIEWISELL+
Sbjct: 181 LEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216

[Close]

BLAST of CmoCh16G002390 vs. NCBI nr
Match: gi|703147665|ref|XP_010109132.1| (Zinc finger CCCH domain-containing protein 54 [Morus notabilis])

HSP 1 Score: 232.3 bits (591), Expect = 8.3e-58
Identity = 112/208 (53.85%), Postives = 138/208 (66.35%), Query Frame = 1


Query: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60
           ML+G    + D   H + + A          L  +  + A++ SDEFRMYA+KI+RCP+ 
Sbjct: 1   MLKGINPTVYDFSDHHYLSAATA------AELNDRAVNEAIYGSDEFRMYAYKIKRCPRM 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPR+ NY+A+ CPAFR G C KGD CEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRKHNYAAIVCPAFRNGGCEKGDACEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180
           RYRTRACN+G+FCQRKVCFFAHSPE+LRPETKLK H+     R A            D +
Sbjct: 121 RYRTRACNSGQFCQRKVCFFAHSPEQLRPETKLKRHYAYRAIRTA----------SIDAM 180

Query: 181 SEIPVKEISDGLGNERSSELEASEFELP 209
           ++I  K IS   G+  ++   +S    P
Sbjct: 181 NDINKKFISTNGGDGSAATSSSSSSPSP 192

[Close]

BLAST of CmoCh16G002390 vs. NCBI nr
Match: gi|720062533|ref|XP_010275497.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Nelumbo nucifera])

HSP 1 Score: 227.3 bits (578), Expect = 2.7e-56
Identity = 115/210 (54.76%), Postives = 143/210 (68.10%), Query Frame = 1


Query: 38  DTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT 97
           D  +++SDEFRMYAFKI+RC ++RSHDWTECPYAHRGEKA+RRDPR+ NY+AV CP FR+
Sbjct: 29  DDEMYDSDEFRMYAFKIKRCTRNRSHDWTECPYAHRGEKARRRDPRKINYAAVVCPEFRS 88

Query: 98  GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLH- 157
           G CPKGD CEFAHGVFEFWLHP +YRTRACNAG++C+RKVCFFAHSPE+LR ETK K + 
Sbjct: 89  GECPKGDSCEFAHGVFEFWLHPAKYRTRACNAGKYCRRKVCFFAHSPEQLRSETKYKCYY 148

Query: 158 -FDAPVAR---------AALAALEYPVERKNDGVS---EIPVKE---------------I 217
            + AP+ R         A+    E  +   N  VS   EIP ++                
Sbjct: 149 TYGAPMDRSNFGEGITGASADDREIDITSYNPPVSSKNEIPSEDNWHFSQSFQKLKIYDH 208

Query: 218 SDGLGNERSSELEASEFELPHIEWISELLQ 219
            D  G ER+   + S  +LP I+WISEL++
Sbjct: 209 GDDEGRERNFGWDVS--DLPDIDWISELVK 236

[Close]

BLAST of CmoCh16G002390 vs. NCBI nr
Match: gi|702501182|ref|XP_010038410.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis])

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-55
Identity = 114/204 (55.88%), Postives = 138/204 (67.65%), Query Frame = 1


Query: 41  LFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSC 100
           ++NSDEFRMYA+K++RCP++RSHDWTECPYAHRGEKAQRRDPR+  Y+AVACPAFR GSC
Sbjct: 26  VYNSDEFRMYAYKVKRCPRTRSHDWTECPYAHRGEKAQRRDPRKVRYAAVACPAFRGGSC 85

Query: 101 PKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAP 160
            KG  CEFAHGVFE+WLHP RYRTRACNAG FCQRKVCFFAHSP+ELRPETK K    A 
Sbjct: 86  LKGSSCEFAHGVFEYWLHPARYRTRACNAGEFCQRKVCFFAHSPDELRPETKYKCSRSAH 145

Query: 161 VARA-------ALAALEYPVERKNDGVSEIPV-KEISDGLGNER------------SSEL 218
             R        ++A    P   + +  S++ V  ++SD L + R              EL
Sbjct: 146 RPRVVEIHGSRSVAPARTPGSPRGNVGSDVEVGDKVSDLLKSPRRLSVRGSDDDDGDGEL 205

The following BLAST results are available for this feature:

BLAST of CmoCh16G002390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H54_ARATH	2.9e-55	53.05	Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE...	[more]
C3H23_ARATH	1.8e-44	65.52	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g259...	[more]
C3H49_ARATH	1.2e-43	68.22	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g291...	[more]
C3H20_ARATH	3.4e-43	66.36	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g198...	[more]
C3H35_ORYSJ	3.4e-43	69.23	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN...	[more]

BLAST of CmoCh16G002390 vs. TrEMBL


Match Name	E-value	Identity	Description
W9SQQ1_9ROSA	5.8e-58	53.85	Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 ...	[more]
T1SFR9_CARPA	2.7e-55	53.77	PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1	[more]
A0A067JF50_JATCU	2.7e-55	53.88	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26303 PE=4 SV=1	[more]
Q6WER2_ARALL	6.6e-54	53.52	Zing finger transcription factor PEI1 OS=Arabidopsis lyrata subsp. lyrata GN=PEI...	[more]
Q6V5C7_ARAAE	1.1e-53	53.02	Zn-finger transcription factor OS=Arabidopsis arenosa GN=Aa1_7500 PE=4 SV=1	[more]

BLAST of CmoCh16G002390 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07500.1	1.7e-56	53.05	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	1.0e-45	65.52	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	6.6e-45	68.22	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G19810.1	1.9e-44	66.36	CCCH-type zinc finger family protein	[more]
AT1G03790.1	3.3e-44	66.67	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

BLAST of CmoCh16G002390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108959\|ref\|XP_008454474.1\|	1.7e-95	75.69	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo]	[more]
gi\|449458405\|ref\|XP_004146938.1\|	8.5e-95	75.23	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus]	[more]
gi\|703147665\|ref\|XP_010109132.1\|	8.3e-58	53.85	Zinc finger CCCH domain-containing protein 54 [Morus notabilis]	[more]
gi\|720062533\|ref\|XP_010275497.1\|	2.7e-56	54.76	PREDICTED: zinc finger CCCH domain-containing protein 54 [Nelumbo nucifera]	[more]
gi\|702501182\|ref\|XP_010038410.1\|	1.3e-55	55.88	PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002390.1	CmoCh16G002390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 91..114 score: 1.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 91..111 score: 4.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 121..144 score: 13.0coord: 86..112 score: 6.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 86..113 score: 13
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 85..116 score: 2.6
None	No IPR available	PANTHER	PTHR14493	UNCHARACTERIZED	coord: 38..157 score: 4.2
None	No IPR available	PANTHER	PTHR14493:SF46	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54	coord: 38..157 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G002390	Cucsa.094060	Cucumber (Gy14) v1	cgycmoB0189
CmoCh16G002390	CmaCh16G002210	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G002390	Cla010708	Watermelon (97103) v1	cmowmB307
CmoCh16G002390	MELO3C017641	Melon (DHL92) v3.5.1	cmomeB299
CmoCh16G002390	ClCG07G017030	Watermelon (Charleston Gray)	cmowcgB295
CmoCh16G002390	CSPI04G04180	Wild cucumber (PI 183967)	cmocpiB328
CmoCh16G002390	Lsi07G001210	Bottle gourd (USVL1VR-Ls)	cmolsiB312
CmoCh16G002390	MELO3C017641.2	Melon (DHL92) v3.6.1	cmomedB343
CmoCh16G002390	CsaV3_4G004250	Cucumber (Chinese Long) v3	cmocucB0384
CmoCh16G002390	Cla97C07G144080	Watermelon (97103) v2	cmowmbB337
CmoCh16G002390	Bhi01G002001	Wax gourd	cmowgoB0438
CmoCh16G002390	CsGy4G004090	Cucumber (Gy14) v2	cgybcmoB464
CmoCh16G002390	Carg16762	Silver-seed gourd	carcmoB1175

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G002390	Watermelon (97103) v2	cmowmbB312
CmoCh16G002390	Cucurbita moschata (Rifu)	cmocmoB280
CmoCh16G002390	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh16G002390	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G002390	Wild cucumber (PI 183967)	cmocpiB341
CmoCh16G002390	Cucumber (Chinese Long) v2	cmocuB321
CmoCh16G002390	Cucumber (Chinese Long) v2	cmocuB333
CmoCh16G002390	Watermelon (Charleston Gray)	cmowcgB287
CmoCh16G002390	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G002390	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G002390	Cucurbita pepo (Zucchini)	cmocpeB325
CmoCh16G002390	Bottle gourd (USVL1VR-Ls)	cmolsiB289
CmoCh16G002390	Cucumber (Gy14) v2	cgybcmoB598
CmoCh16G002390	Silver-seed gourd	carcmoB0509
CmoCh16G002390	Silver-seed gourd	carcmoB0967
CmoCh16G002390	Cucumber (Chinese Long) v3	cmocucB0402