CmoCh16G002390 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G002390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionZinc finger CCCH domain-containing protein 54
LocationCmo_Chr16 : 1052957 .. 1053613 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCATGAATTCACCGCCGTGGCGCTGCCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCGATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGAACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAACTCAAGCTTCATTTTGATGCTCCCGTGGCGCGTGCAGCGCTGGCCGCACTTGAATATCCCGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCGGAGTTGGAGGCGTCAGAATTCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA

mRNA sequence

ATGTTACAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCATGAATTCACCGCCGTGGCGCTGCCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCGATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGAACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAACTCAAGCTTCATTTTGATGCTCCCGTGGCGCGTGCAGCGCTGGCCGCACTTGAATATCCCGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCGGAGTTGGAGGCGTCAGAATTCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA

Coding sequence (CDS)

ATGTTACAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCATGAATTCACCGCCGTGGCGCTGCCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCGATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGAACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAACTCAAGCTTCATTTTGATGCTCCCGTGGCGCGTGCAGCGCTGGCCGCACTTGAATATCCCGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCGGAGTTGGAGGCGTCAGAATTCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA
BLAST of CmoCh16G002390 vs. Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.9e-55
Identity = 113/213 (53.05%), Postives = 134/213 (62.91%), Query Frame = 1

Query: 26  AYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRF 85
           AY      P  DD A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+
Sbjct: 33  AYEIDPSIPNIDD-AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRY 92

Query: 86  NYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPE 145
            Y AVACPAFR G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE
Sbjct: 93  TYCAVACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPE 152

Query: 146 ELR-PETKLKLHFDAPVARAALAALEYPVERKND----GVSEIPVKEISDGLGNERSSEL 205
           +LR  E K +  +     RA        V  + D      S  PV+   D L +     L
Sbjct: 153 QLRQSEGKHRCRYAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVL 212

Query: 206 --------------EAS--EFELPHIEWISELL 218
                         E S  + +L H +WISEL+
Sbjct: 213 LKCWSRMSIVDDHYEPSDLDLDLSHFDWISELV 244

BLAST of CmoCh16G002390 vs. Swiss-Prot
Match: C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-44
Identity = 76/116 (65.52%), Postives = 94/116 (81.03%), Query Frame = 1

Query: 33  TPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVAC 92
           +P TD    F+SDEFR+Y FKI+RC + RSHDWTECP+AH GEKA+RRDPR+F+YS  AC
Sbjct: 80  SPLTDS---FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTAC 139

Query: 93  PAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           P FR GSC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 140 PEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

BLAST of CmoCh16G002390 vs. Swiss-Prot
Match: C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 1

Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           ++ D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+++YS  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           KGD CEFAHGVFE WLHP RYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

BLAST of CmoCh16G002390 vs. Swiss-Prot
Match: C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.4e-43
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 1

Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           +  D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+F+YS  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           +GD CEF+HGVFE WLHP RYRT+ C  G  C+R+VCFFAHSP+++R
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIR 180

BLAST of CmoCh16G002390 vs. Swiss-Prot
Match: C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.4e-43
Identity = 72/104 (69.23%), Postives = 85/104 (81.73%), Query Frame = 1

Query: 45  DEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGD 104
           DEFRMY FK++RC + RSHDWTECP+AH GEKA+RRDPRR+ YS  ACP FR G C +GD
Sbjct: 76  DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCKRGD 135

Query: 105 FCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
            CEFAHGVFE WLHP RYRT+ C  G  C+R+VCFFAH+P++LR
Sbjct: 136 ACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLR 179

BLAST of CmoCh16G002390 vs. TrEMBL
Match: W9SQQ1_9ROSA (Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.8e-58
Identity = 112/208 (53.85%), Postives = 138/208 (66.35%), Query Frame = 1

Query: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60
           ML+G    + D   H + + A          L  +  + A++ SDEFRMYA+KI+RCP+ 
Sbjct: 1   MLKGINPTVYDFSDHHYLSAATA------AELNDRAVNEAIYGSDEFRMYAYKIKRCPRM 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPR+ NY+A+ CPAFR G C KGD CEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRKHNYAAIVCPAFRNGGCEKGDACEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180
           RYRTRACN+G+FCQRKVCFFAHSPE+LRPETKLK H+     R A            D +
Sbjct: 121 RYRTRACNSGQFCQRKVCFFAHSPEQLRPETKLKRHYAYRAIRTA----------SIDAM 180

Query: 181 SEIPVKEISDGLGNERSSELEASEFELP 209
           ++I  K IS   G+  ++   +S    P
Sbjct: 181 NDINKKFISTNGGDGSAATSSSSSSPSP 192

BLAST of CmoCh16G002390 vs. TrEMBL
Match: T1SFR9_CARPA (PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-55
Identity = 107/199 (53.77%), Postives = 134/199 (67.34%), Query Frame = 1

Query: 38  DTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT 97
           D A++ SDEFRM+A+KI+RCP+ RSHDWTECPYAHRGEKAQRRDPR+ +Y AVACPAFR 
Sbjct: 50  DEAIYGSDEFRMFAYKIKRCPRMRSHDWTECPYAHRGEKAQRRDPRKLSYCAVACPAFRN 109

Query: 98  GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHF 157
           G C +G+ C+FAHGVFE+WLHP RYRTRACNAGRFCQRKVCFFAH+P++LR ETK K   
Sbjct: 110 GRCYRGETCDFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPQQLRSETKYKCQV 169

Query: 158 ---------DAPVARAALAALEY--PVERKNDGVSEIPVKE--------ISDGLGNERSS 217
                    D  + R           +  +  G  ++P+KE           GL  +   
Sbjct: 170 TYRGRMYGGDEVIRRPVQVGSSQGRMLMSRAPGPVKMPMKEEVPGDFLRSLSGLKIKEKG 229

BLAST of CmoCh16G002390 vs. TrEMBL
Match: A0A067JF50_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26303 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-55
Identity = 111/206 (53.88%), Postives = 138/206 (66.99%), Query Frame = 1

Query: 24  EFAYRNTRLTPQTDDT---ALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRR 83
           ++A+    +TP   D    A++ SDEFRMYA+KI+RC ++RSHDWTECPYAHRGEKA RR
Sbjct: 18  DYAFSGLNVTPPHYDNIHDAIYGSDEFRMYAYKIKRCTRTRSHDWTECPYAHRGEKATRR 77

Query: 84  DPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFF 143
           DPR+  Y A+ACP FR G C KGD CE+AHGVFE+WLHP RYRTRACNAGRFCQRKVCFF
Sbjct: 78  DPRKVPYVAIACPGFRNGKCHKGDTCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFF 137

Query: 144 AHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGVSEIPVKEISDGLGN------ 203
           AH+PE+LR E K    F   V RA +         +    S I + E+ + L N      
Sbjct: 138 AHTPEQLRSEKKYACPF---VYRARMNG----GSEEGSTSSGIRMDELLNSLRNWNIVDE 197

Query: 204 --ERSSELEASEFELPHIEWISELLQ 219
             +    +E SE EL H++WISEL++
Sbjct: 198 EKKGGGGIEESEGELAHLDWISELVK 216

BLAST of CmoCh16G002390 vs. TrEMBL
Match: Q6WER2_ARALL (Zing finger transcription factor PEI1 OS=Arabidopsis lyrata subsp. lyrata GN=PEI1 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.6e-54
Identity = 114/213 (53.52%), Postives = 135/213 (63.38%), Query Frame = 1

Query: 26  AYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRF 85
           AY      P  DD A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+
Sbjct: 34  AYEIDPPIPNIDD-AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRY 93

Query: 86  NYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPE 145
            Y AVACPAFR G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE
Sbjct: 94  TYCAVACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPE 153

Query: 146 ELR-PETKLKLHFDAPVARAALAALEYPVERKNDG----VSEIPVKEISDGLGNERSSEL 205
           +LR  E K +  +     RA        V  + DG     S  PV+   D L +     L
Sbjct: 154 QLRQSEGKHRCRYAYRPVRARGGGNGDGVAMRMDGEDYDTSRSPVRSGKDDLDSNEEKVL 213

Query: 206 --------------EAS--EFELPHIEWISELL 218
                         E S  + +L H +WISEL+
Sbjct: 214 LKCWSRMSIVDDHYEPSDLDLDLSHFDWISELV 245

BLAST of CmoCh16G002390 vs. TrEMBL
Match: Q6V5C7_ARAAE (Zn-finger transcription factor OS=Arabidopsis arenosa GN=Aa1_7500 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53
Identity = 114/215 (53.02%), Postives = 135/215 (62.79%), Query Frame = 1

Query: 26  AYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRF 85
           AY      P  DD A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+
Sbjct: 33  AYEIDPPIPNIDD-AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRY 92

Query: 86  NYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPE 145
            Y AVACPAFR G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE
Sbjct: 93  TYCAVACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPE 152

Query: 146 ELR-PETKLKLHFDAPVARAALAALEYPVERKNDG----VSEIPVKEISDGLGNERSSEL 205
           +LR  E K +  +     RA        V  + DG     S  PV+   D L +     L
Sbjct: 153 QLRQSEGKHRCRYAYRPVRARGGGNGDGVAMRMDGEDYDTSRSPVRSGKDDLDSNEEKVL 212

Query: 206 --------------EAS----EFELPHIEWISELL 218
                         E S    + +L H +WISEL+
Sbjct: 213 LKCWSRMSIMDDHYEPSDLDLDLDLSHFDWISELV 246

BLAST of CmoCh16G002390 vs. TAIR10
Match: AT5G07500.1 (AT5G07500.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 216.5 bits (550), Expect = 1.7e-56
Identity = 113/213 (53.05%), Postives = 134/213 (62.91%), Query Frame = 1

Query: 26  AYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRF 85
           AY      P  DD A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+
Sbjct: 33  AYEIDPSIPNIDD-AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRY 92

Query: 86  NYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPE 145
            Y AVACPAFR G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE
Sbjct: 93  TYCAVACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPE 152

Query: 146 ELR-PETKLKLHFDAPVARAALAALEYPVERKND----GVSEIPVKEISDGLGNERSSEL 205
           +LR  E K +  +     RA        V  + D      S  PV+   D L +     L
Sbjct: 153 QLRQSEGKHRCRYAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVL 212

Query: 206 --------------EAS--EFELPHIEWISELL 218
                         E S  + +L H +WISEL+
Sbjct: 213 LKCWSRMSIVDDHYEPSDLDLDLSHFDWISELV 244

BLAST of CmoCh16G002390 vs. TAIR10
Match: AT2G25900.1 (AT2G25900.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-45
Identity = 76/116 (65.52%), Postives = 94/116 (81.03%), Query Frame = 1

Query: 33  TPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVAC 92
           +P TD    F+SDEFR+Y FKI+RC + RSHDWTECP+AH GEKA+RRDPR+F+YS  AC
Sbjct: 80  SPLTDS---FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTAC 139

Query: 93  PAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           P FR GSC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 140 PEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

BLAST of CmoCh16G002390 vs. TAIR10
Match: AT4G29190.1 (AT4G29190.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 177.9 bits (450), Expect = 6.6e-45
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 1

Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           ++ D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+++YS  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           KGD CEFAHGVFE WLHP RYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

BLAST of CmoCh16G002390 vs. TAIR10
Match: AT2G19810.1 (AT2G19810.1 CCCH-type zinc finger family protein)

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-44
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 1

Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           +  D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+F+YS  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           +GD CEF+HGVFE WLHP RYRT+ C  G  C+R+VCFFAHSP+++R
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIR 180

BLAST of CmoCh16G002390 vs. TAIR10
Match: AT1G03790.1 (AT1G03790.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 175.6 bits (444), Expect = 3.3e-44
Identity = 76/114 (66.67%), Postives = 88/114 (77.19%), Query Frame = 1

Query: 36  TDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAF 95
           +D    + SD FRM+ FKI+RC +SRSHDWT+CP+AH GEKA+RRDPRRF YS   CP F
Sbjct: 72  SDSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEF 131

Query: 96  RT-GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           R  G C +GD CEFAHGVFE WLHP RYRT AC  G+ C+RKVCFFAHSP +LR
Sbjct: 132 RRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLR 185

BLAST of CmoCh16G002390 vs. NCBI nr
Match: gi|659108959|ref|XP_008454474.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo])

HSP 1 Score: 357.5 bits (916), Expect = 1.7e-95
Identity = 165/218 (75.69%), Postives = 186/218 (85.32%), Query Frame = 1

Query: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60
           M QGFVFGINDVYGHEF+AV+LPE    N  LT + DDTA+F++DEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGN--LTEKVDDTAVFSTDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K + +A   R A+AA+E P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGI 180

Query: 181 SEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 219
            EIP +E   G  NERS   + SE ELPHIEWISELL+
Sbjct: 181 LEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

BLAST of CmoCh16G002390 vs. NCBI nr
Match: gi|449458405|ref|XP_004146938.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus])

HSP 1 Score: 355.1 bits (910), Expect = 8.5e-95
Identity = 164/218 (75.23%), Postives = 184/218 (84.40%), Query Frame = 1

Query: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60
           M QGFVFGINDVYGHEF+ V+LPE    N  LT +TDDTA+F+SDEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGN--LTEKTDDTAVFSSDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPR+FNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK K  F A   R A+ A+E P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGI 180

Query: 181 SEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 219
            EIP +    G  NERS  L+ +E ELPHIEWISELL+
Sbjct: 181 LEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216

BLAST of CmoCh16G002390 vs. NCBI nr
Match: gi|703147665|ref|XP_010109132.1| (Zinc finger CCCH domain-containing protein 54 [Morus notabilis])

HSP 1 Score: 232.3 bits (591), Expect = 8.3e-58
Identity = 112/208 (53.85%), Postives = 138/208 (66.35%), Query Frame = 1

Query: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60
           ML+G    + D   H + + A          L  +  + A++ SDEFRMYA+KI+RCP+ 
Sbjct: 1   MLKGINPTVYDFSDHHYLSAATA------AELNDRAVNEAIYGSDEFRMYAYKIKRCPRM 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPR+ NY+A+ CPAFR G C KGD CEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRKHNYAAIVCPAFRNGGCEKGDACEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180
           RYRTRACN+G+FCQRKVCFFAHSPE+LRPETKLK H+     R A            D +
Sbjct: 121 RYRTRACNSGQFCQRKVCFFAHSPEQLRPETKLKRHYAYRAIRTA----------SIDAM 180

Query: 181 SEIPVKEISDGLGNERSSELEASEFELP 209
           ++I  K IS   G+  ++   +S    P
Sbjct: 181 NDINKKFISTNGGDGSAATSSSSSSPSP 192

BLAST of CmoCh16G002390 vs. NCBI nr
Match: gi|720062533|ref|XP_010275497.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Nelumbo nucifera])

HSP 1 Score: 227.3 bits (578), Expect = 2.7e-56
Identity = 115/210 (54.76%), Postives = 143/210 (68.10%), Query Frame = 1

Query: 38  DTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT 97
           D  +++SDEFRMYAFKI+RC ++RSHDWTECPYAHRGEKA+RRDPR+ NY+AV CP FR+
Sbjct: 29  DDEMYDSDEFRMYAFKIKRCTRNRSHDWTECPYAHRGEKARRRDPRKINYAAVVCPEFRS 88

Query: 98  GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLH- 157
           G CPKGD CEFAHGVFEFWLHP +YRTRACNAG++C+RKVCFFAHSPE+LR ETK K + 
Sbjct: 89  GECPKGDSCEFAHGVFEFWLHPAKYRTRACNAGKYCRRKVCFFAHSPEQLRSETKYKCYY 148

Query: 158 -FDAPVAR---------AALAALEYPVERKNDGVS---EIPVKE---------------I 217
            + AP+ R         A+    E  +   N  VS   EIP ++                
Sbjct: 149 TYGAPMDRSNFGEGITGASADDREIDITSYNPPVSSKNEIPSEDNWHFSQSFQKLKIYDH 208

Query: 218 SDGLGNERSSELEASEFELPHIEWISELLQ 219
            D  G ER+   + S  +LP I+WISEL++
Sbjct: 209 GDDEGRERNFGWDVS--DLPDIDWISELVK 236

BLAST of CmoCh16G002390 vs. NCBI nr
Match: gi|702501182|ref|XP_010038410.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis])

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-55
Identity = 114/204 (55.88%), Postives = 138/204 (67.65%), Query Frame = 1

Query: 41  LFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSC 100
           ++NSDEFRMYA+K++RCP++RSHDWTECPYAHRGEKAQRRDPR+  Y+AVACPAFR GSC
Sbjct: 26  VYNSDEFRMYAYKVKRCPRTRSHDWTECPYAHRGEKAQRRDPRKVRYAAVACPAFRGGSC 85

Query: 101 PKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAP 160
            KG  CEFAHGVFE+WLHP RYRTRACNAG FCQRKVCFFAHSP+ELRPETK K    A 
Sbjct: 86  LKGSSCEFAHGVFEYWLHPARYRTRACNAGEFCQRKVCFFAHSPDELRPETKYKCSRSAH 145

Query: 161 VARA-------ALAALEYPVERKNDGVSEIPV-KEISDGLGNER------------SSEL 218
             R        ++A    P   + +  S++ V  ++SD L + R              EL
Sbjct: 146 RPRVVEIHGSRSVAPARTPGSPRGNVGSDVEVGDKVSDLLKSPRRLSVRGSDDDDGDGEL 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
C3H54_ARATH2.9e-5553.05Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE... [more]
C3H23_ARATH1.8e-4465.52Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g259... [more]
C3H49_ARATH1.2e-4368.22Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g291... [more]
C3H20_ARATH3.4e-4366.36Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g198... [more]
C3H35_ORYSJ3.4e-4369.23Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN... [more]
Match NameE-valueIdentityDescription
W9SQQ1_9ROSA5.8e-5853.85Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 ... [more]
T1SFR9_CARPA2.7e-5553.77PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1[more]
A0A067JF50_JATCU2.7e-5553.88Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26303 PE=4 SV=1[more]
Q6WER2_ARALL6.6e-5453.52Zing finger transcription factor PEI1 OS=Arabidopsis lyrata subsp. lyrata GN=PEI... [more]
Q6V5C7_ARAAE1.1e-5353.02Zn-finger transcription factor OS=Arabidopsis arenosa GN=Aa1_7500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G07500.11.7e-5653.05 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT2G25900.11.0e-4565.52 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT4G29190.16.6e-4568.22 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT2G19810.11.9e-4466.36 CCCH-type zinc finger family protein[more]
AT1G03790.13.3e-4466.67 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
Match NameE-valueIdentityDescription
gi|659108959|ref|XP_008454474.1|1.7e-9575.69PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo][more]
gi|449458405|ref|XP_004146938.1|8.5e-9575.23PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus][more]
gi|703147665|ref|XP_010109132.1|8.3e-5853.85Zinc finger CCCH domain-containing protein 54 [Morus notabilis][more]
gi|720062533|ref|XP_010275497.1|2.7e-5654.76PREDICTED: zinc finger CCCH domain-containing protein 54 [Nelumbo nucifera][more]
gi|702501182|ref|XP_010038410.1|1.3e-5555.88PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009793 embryo development ending in seed dormancy
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002390.1CmoCh16G002390.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 91..114
score: 1.
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 91..111
score: 4.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 121..144
score: 13.0coord: 86..112
score: 6.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 86..113
score: 13
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 85..116
score: 2.6
NoneNo IPR availablePANTHERPTHR14493UNCHARACTERIZEDcoord: 38..157
score: 4.2
NoneNo IPR availablePANTHERPTHR14493:SF46ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54coord: 38..157
score: 4.2

The following gene(s) are paralogous to this gene:

None