Lsi07G001210 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G001210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Zinc finger CCCH domain-containing protein 54
Location	chr07 : 1360948 .. 1361598 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGTCACGAATTCTCCGCCGTGTCTCTGCCGGAAATCACTTACAGCCACTTAACGGAACAAATCGACGACACGGCGGTATTCAGCTCCGACGAGTTTCGAATGTACGCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCGGGCAGCTGCCCGAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGGGCCTGTAATGCGGGCCGGTTTTGCCAACGCAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGCCCAGAGACCAAGCAGAAGTTTAATTTTAATGCTCACCGGCAGCGTGCGGCGGTTACCGCCATTGAATGTCCGCCGGAGGAAAAAATTGACGGCGTTTTAGAAACTCCGGTGAGGGAGAACGGCGGCGGACGGGAAAATGGACGGAGTTTTGGGTTGGAGGTCTCGGAATTGGACTTGCCGCATATTGAATGGATATCGGAATTGTTGCAGTAA

mRNA sequence

ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGTCACGAATTCTCCGCCGTGTCTCTGCCGGAAATCACTTACAGCCACTTAACGGAACAAATCGACGACACGGCGGTATTCAGCTCCGACGAGTTTCGAATGTACGCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCGGGCAGCTGCCCGAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGGGCCTGTAATGCGGGCCGGTTTTGCCAACGCAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGCCCAGAGACCAAGCAGAAGTTTAATTTTAATGCTCACCGGCAGCGTGCGGCGGTTACCGCCATTGAATGTCCGCCGGAGGAAAAAATTGACGGCGTTTTAGAAACTCCGGTGAGGGAGAACGGCGGCGGACGGGAAAATGGACGGAGTTTTGGGTTGGAGGTCTCGGAATTGGACTTGCCGCATATTGAATGGATATCGGAATTGTTGCAGTAA

Coding sequence (CDS)

ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGTCACGAATTCTCCGCCGTGTCTCTGCCGGAAATCACTTACAGCCACTTAACGGAACAAATCGACGACACGGCGGTATTCAGCTCCGACGAGTTTCGAATGTACGCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCGGGCAGCTGCCCGAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGGGCCTGTAATGCGGGCCGGTTTTGCCAACGCAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGCCCAGAGACCAAGCAGAAGTTTAATTTTAATGCTCACCGGCAGCGTGCGGCGGTTACCGCCATTGAATGTCCGCCGGAGGAAAAAATTGACGGCGTTTTAGAAACTCCGGTGAGGGAGAACGGCGGCGGACGGGAAAATGGACGGAGTTTTGGGTTGGAGGTCTCGGAATTGGACTTGCCGCATATTGAATGGATATCGGAATTGTTGCAGTAA

Protein sequence

MFQGFVFGINDVYGHEFSAVSLPEITYSHLTEQIDDTAVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNFNAHRQRAAVTAIECPPEEKIDGVLETPVRENGGGRENGRSFGLEVSELDLPHIEWISELLQ

Homology

[Close]

BLAST of Lsi07G001210 vs. Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.3e-57
Identity = 114/207 (55.07%), Postives = 130/207 (62.80%), Query Frame = 1


Query: 36  DTAVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ SDEFRMYAYKI+RCPR RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR+
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNF 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR         
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSE------ 163

Query: 156 NAHRQRAAVTAIECPPEEKIDGVL-----------ETPVRENGGGRENGRSFGL------ 215
             HR R A   +        DGV             +PVR      ++     L      
Sbjct: 164 GKHRCRYAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKCWSR 223

[Close]

BLAST of Lsi07G001210 vs. Swiss-Prot
Match: C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.2e-44
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 1


Query: 37  TAVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSG 96
           T  FSSDEFR+Y +KI+RC R RSHDWTECP+AH GEKA+RRDPR+F+Y+  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 97  SCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of Lsi07G001210 vs. Swiss-Prot
Match: C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.2e-44
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 1


Query: 40  FSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCP 99
           +S D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

[Close]

BLAST of Lsi07G001210 vs. Swiss-Prot
Match: C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.8e-44
Identity = 80/141 (56.74%), Postives = 97/141 (68.79%), Query Frame = 1


Query: 40  FSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCP 99
           ++ DEFRMY +K++RC R RSHDWTECP+AH GEKA+RRDPRR+ Y+  ACP FR G C 
Sbjct: 73  YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCK 132

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR---PETKQKFNFN 159
           +GD CEFAHGVFE WLHPARYRT+ C  G  C+R+VCFFAH+P++LR   P  +Q  N  
Sbjct: 133 RGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSP 192

Query: 160 AHRQRAAVTAIECPPEEKIDG 178
                    A   P  E  DG
Sbjct: 193 RGCGGGGAGAAASPLAESYDG 213

[Close]

BLAST of Lsi07G001210 vs. Swiss-Prot
Match: C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.6e-43
Identity = 71/107 (66.36%), Postives = 88/107 (82.24%), Query Frame = 1


Query: 40  FSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCP 99
           ++ D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+F+Y+  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           +GD CEF+HGVFE WLHPARYRT+ C  G  C+R+VCFFAHSP+++R
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIR 180

[Close]

BLAST of Lsi07G001210 vs. TrEMBL
Match: T1SFR9_CARPA (PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 8.8e-59
Identity = 116/202 (57.43%), Postives = 139/202 (68.81%), Query Frame = 1


Query: 36  DTAVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ SDEFRM+AYKI+RCPR RSHDWTECPYAHRGEKAQRRDPR+ +Y AVACPAFR+
Sbjct: 50  DEAIYGSDEFRMFAYKIKRCPRMRSHDWTECPYAHRGEKAQRRDPRKLSYCAVACPAFRN 109

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNF 155
           G C +G+ C+FAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+P++LR ETK K   
Sbjct: 110 GRCYRGETCDFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPQQLRSETKYKCQV 169

Query: 156 NAH-RQRAAVTAIECPPE----------EKIDGVLETPVRENGGG-----------RENG 215
               R       I  P +           +  G ++ P++E   G           +E G
Sbjct: 170 TYRGRMYGGDEVIRRPVQVGSSQGRMLMSRAPGPVKMPMKEEVPGDFLRSLSGLKIKEKG 229

[Close]

BLAST of Lsi07G001210 vs. TrEMBL
Match: W9SQQ1_9ROSA (Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.4e-58
Identity = 110/188 (58.51%), Postives = 134/188 (71.28%), Query Frame = 1


Query: 1   MFQGFVFGINDVYGHEFSAVSLPEITYSHLTEQIDDTAVFSSDEFRMYAYKIQRCPRNRS 60
           M +G    + D   H +    L   T + L ++  + A++ SDEFRMYAYKI+RCPR RS
Sbjct: 1   MLKGINPTVYDFSDHHY----LSAATAAELNDRAVNEAIYGSDEFRMYAYKIKRCPRMRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+ NY A+ CPAFR+G C KGD CEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRKHNYAAIVCPAFRNGGCEKGDACEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNFNAHRQRAAVTAIECPPEEKIDGVLE 180
           RTRACN+G+FCQRKVCFFAHSPE+LRPETK K ++       A  AI     + ++ + +
Sbjct: 121 RTRACNSGQFCQRKVCFFAHSPEQLRPETKLKRHY-------AYRAIRTASIDAMNDINK 177

Query: 181 TPVRENGG 189
             +  NGG
Sbjct: 181 KFISTNGG 177

[Close]

BLAST of Lsi07G001210 vs. TrEMBL
Match: A0A067JF50_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26303 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 114/208 (54.81%), Postives = 142/208 (68.27%), Query Frame = 1


Query: 11  DVYGHEFSAVSLPEITYSHLTEQIDDTAVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAH 70
           D   + FS +++    Y ++ +     A++ SDEFRMYAYKI+RC R RSHDWTECPYAH
Sbjct: 15  DFGDYAFSGLNVTPPHYDNIHD-----AIYGSDEFRMYAYKIKRCTRTRSHDWTECPYAH 74

Query: 71  RGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRF 130
           RGEKA RRDPR+  Y A+ACP FR+G C KGD CE+AHGVFEYWLHPARYRTRACNAGRF
Sbjct: 75  RGEKATRRDPRKVPYVAIACPGFRNGKCHKGDTCEYAHGVFEYWLHPARYRTRACNAGRF 134

Query: 131 CQRKVCFFAHSPEELRPETKQKFNFNAHRQRAAVTAIECPPEE--KIDGVLETPVRENGG 190
           CQRKVCFFAH+PE+LR E K    F  +R R    + E       ++D +L +    N  
Sbjct: 135 CQRKVCFFAHTPEQLRSEKKYACPF-VYRARMNGGSEEGSTSSGIRMDELLNSLRNWNIV 194

Query: 191 GRENGRSFGLEVSELDLPHIEWISELLQ 217
             E     G+E SE +L H++WISEL++
Sbjct: 195 DEEKKGGGGIEESEGELAHLDWISELVK 216

[Close]

BLAST of Lsi07G001210 vs. TrEMBL
Match: Q6V5E1_OLIPU (Zn-finger transcription factor OS=Olimarabidopsis pumila GN=Op_7500 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-55
Identity = 112/202 (55.45%), Postives = 136/202 (67.33%), Query Frame = 1


Query: 36  DTAVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ SDEFRMYAYKI+RCPR RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR+
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRP---ETKQK 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR    + + +
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCR 163

Query: 156 FNFNAHRQRAAVT-AIECPPEEKIDGVLETPVRENGGGRENGRSFGL------------- 215
           + +   R R   + A+    E +      +P +   GG ++     L             
Sbjct: 164 YAYRPVRTRGGNSDAMAVRMEGEDYDTSRSPEKSGKGGLDSNEEKVLFKCWSRMNIVDDH 223

[Close]

BLAST of Lsi07G001210 vs. TrEMBL
Match: Q6V5F9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002521mg PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.5e-55
Identity = 113/207 (54.59%), Postives = 135/207 (65.22%), Query Frame = 1


Query: 36  DTAVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ SDEFRMYAYKI+RCPR RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR+
Sbjct: 46  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 105

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR-PETKQKFN 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR  E K +  
Sbjct: 106 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCR 165

Query: 156 FNAHRQRAAVTAIECPPEEKIDGVLETPVRENGGGRENGRSFGLEVSE------------ 215
           + A+R   A          ++DG        +    ++G+S GL+ +E            
Sbjct: 166 Y-AYRPVRARGGNSNGVAMRMDG---EDYDTSRSPEKSGKSVGLDSNEEKVLLKCWSRMS 225

[Close]

BLAST of Lsi07G001210 vs. TAIR10
Match: AT5G07500.1 (AT5G07500.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 222.2 bits (565), Expect = 3.0e-58
Identity = 114/207 (55.07%), Postives = 130/207 (62.80%), Query Frame = 1


Query: 36  DTAVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ SDEFRMYAYKI+RCPR RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR+
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNF 155
           G+C +GD CEFAHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH+PE+LR         
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSE------ 163

Query: 156 NAHRQRAAVTAIECPPEEKIDGVL-----------ETPVRENGGGRENGRSFGL------ 215
             HR R A   +        DGV             +PVR      ++     L      
Sbjct: 164 GKHRCRYAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKCWSR 223

[Close]

BLAST of Lsi07G001210 vs. TAIR10
Match: AT2G25900.1 (AT2G25900.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-45
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 1


Query: 37  TAVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSG 96
           T  FSSDEFR+Y +KI+RC R RSHDWTECP+AH GEKA+RRDPR+F+Y+  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 97  SCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of Lsi07G001210 vs. TAIR10
Match: AT4G29190.1 (AT4G29190.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-45
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 1


Query: 40  FSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCP 99
           +S D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+++Y+  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           KGD CEFAHGVFE WLHPARYRT+ C  G  C RK+CFFAHSP++LR
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181

[Close]

BLAST of Lsi07G001210 vs. TAIR10
Match: AT2G19810.1 (AT2G19810.1 CCCH-type zinc finger family protein)

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-44
Identity = 71/107 (66.36%), Postives = 88/107 (82.24%), Query Frame = 1


Query: 40  FSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCP 99
           ++ D FRMY +K++RC R RSHDWTECPYAH GEKA+RRDPR+F+Y+  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 100 KGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELR 147
           +GD CEF+HGVFE WLHPARYRT+ C  G  C+R+VCFFAHSP+++R
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIR 180

[Close]

BLAST of Lsi07G001210 vs. TAIR10
Match: AT2G41900.1 (AT2G41900.1 CCCH-type zinc finger protein with ARM repeat domain)

HSP 1 Score: 175.3 bits (443), Expect = 4.2e-44
Identity = 70/110 (63.64%), Postives = 90/110 (81.82%), Query Frame = 1


Query: 38  AVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGS 97
           +++++DEFRMY++K++ C R  SHDWTECP+ H GE A+RRDPR+F+Y+ V CP FR G+
Sbjct: 255 SIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA 314

Query: 98  CPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRP 148
           C +GD CE+AHGVFE WLHPA+YRTR C  G  C R+VCFFAH+PEELRP
Sbjct: 315 CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRP 364

[Close]

BLAST of Lsi07G001210 vs. NCBI nr
Match: gi|659108959|ref|XP_008454474.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo])

HSP 1 Score: 420.6 bits (1080), Expect = 1.6e-114
Identity = 191/216 (88.43%), Postives = 203/216 (93.98%), Query Frame = 1


Query: 1   MFQGFVFGINDVYGHEFSAVSLPEITYSHLTEQIDDTAVFSSDEFRMYAYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFSAVSLPE+T  +LTE++DDTAVFS+DEFRMY+YKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGNLTEKVDDTAVFSTDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNFNAHRQRAAVTAIECPPEEKIDGVLE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETK KFN NA RQR AV A+E PPEEK DG+LE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGILE 180

Query: 181 TPVRENGGGRENGRSFGLEVSELDLPHIEWISELLQ 217
            P RENGGGR+N RSFG +VSEL+LPHIEWISELL+
Sbjct: 181 IPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of Lsi07G001210 vs. NCBI nr
Match: gi|449458405|ref|XP_004146938.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus])

HSP 1 Score: 409.1 bits (1050), Expect = 4.9e-111
Identity = 187/216 (86.57%), Postives = 202/216 (93.52%), Query Frame = 1


Query: 1   MFQGFVFGINDVYGHEFSAVSLPEITYSHLTEQIDDTAVFSSDEFRMYAYKIQRCPRNRS 60
           MFQGFVFGINDVYGHEFS VSLPE+T  +LTE+ DDTAVFSSDEFRMY+YKIQRCPRNRS
Sbjct: 1   MFQGFVFGINDVYGHEFSVVSLPELTVGNLTEKTDDTAVFSSDEFRMYSYKIQRCPRNRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+FNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNFNAHRQRAAVTAIECPPEEKIDGVLE 180
           RTRACNAGRFCQRKVCFFAHSPEELRPETKQK +F+AH+QR AV AIE PPEEK DG+LE
Sbjct: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILE 180

Query: 181 TPVRENGGGRENGRSFGLEVSELDLPHIEWISELLQ 217
            P R +G GR+N RSFGL+V+EL+LPHIEWISELL+
Sbjct: 181 IPARVSGSGRKNERSFGLDVTELELPHIEWISELLK 216

[Close]

BLAST of Lsi07G001210 vs. NCBI nr
Match: gi|702501182|ref|XP_010038410.1| (PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis])

HSP 1 Score: 235.3 bits (599), Expect = 9.7e-59
Identity = 116/204 (56.86%), Postives = 134/204 (65.69%), Query Frame = 1


Query: 39  VFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSC 98
           V++SDEFRMYAYK++RCPR RSHDWTECPYAHRGEKAQRRDPR+  Y AVACPAFR GSC
Sbjct: 26  VYNSDEFRMYAYKVKRCPRTRSHDWTECPYAHRGEKAQRRDPRKVRYAAVACPAFRGGSC 85

Query: 99  PKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNFNAH 158
            KG  CEFAHGVFEYWLHPARYRTRACNAG FCQRKVCFFAHSP+ELRPETK K + +AH
Sbjct: 86  LKGSSCEFAHGVFEYWLHPARYRTRACNAGEFCQRKVCFFAHSPDELRPETKYKCSRSAH 145

Query: 159 RQRA-------AVTAIECP--PEEKIDGVLETPVRE------------------NGGGRE 216
           R R        +V     P  P   +   +E   +                   +G G  
Sbjct: 146 RPRVVEIHGSRSVAPARTPGSPRGNVGSDVEVGDKVSDLLKSPRRLSVRGSDDDDGDGEL 205

[Close]

BLAST of Lsi07G001210 vs. NCBI nr
Match: gi|530341557|gb|AGT21469.1| (PEI1-like [Carica papaya])

HSP 1 Score: 235.0 bits (598), Expect = 1.3e-58
Identity = 116/202 (57.43%), Postives = 139/202 (68.81%), Query Frame = 1


Query: 36  DTAVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRS 95
           D A++ SDEFRM+AYKI+RCPR RSHDWTECPYAHRGEKAQRRDPR+ +Y AVACPAFR+
Sbjct: 50  DEAIYGSDEFRMFAYKIKRCPRMRSHDWTECPYAHRGEKAQRRDPRKLSYCAVACPAFRN 109

Query: 96  GSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNF 155
           G C +G+ C+FAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+P++LR ETK K   
Sbjct: 110 GRCYRGETCDFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPQQLRSETKYKCQV 169

Query: 156 NAH-RQRAAVTAIECPPE----------EKIDGVLETPVRENGGG-----------RENG 215
               R       I  P +           +  G ++ P++E   G           +E G
Sbjct: 170 TYRGRMYGGDEVIRRPVQVGSSQGRMLMSRAPGPVKMPMKEEVPGDFLRSLSGLKIKEKG 229

[Close]

BLAST of Lsi07G001210 vs. NCBI nr
Match: gi|703147665|ref|XP_010109132.1| (Zinc finger CCCH domain-containing protein 54 [Morus notabilis])

HSP 1 Score: 233.0 bits (593), Expect = 4.8e-58
Identity = 110/188 (58.51%), Postives = 134/188 (71.28%), Query Frame = 1


Query: 1   MFQGFVFGINDVYGHEFSAVSLPEITYSHLTEQIDDTAVFSSDEFRMYAYKIQRCPRNRS 60
           M +G    + D   H +    L   T + L ++  + A++ SDEFRMYAYKI+RCPR RS
Sbjct: 1   MLKGINPTVYDFSDHHY----LSAATAAELNDRAVNEAIYGSDEFRMYAYKIKRCPRMRS 60

Query: 61  HDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARY 120
           HDWTECPYAHRGEKAQRRDPR+ NY A+ CPAFR+G C KGD CEFAHGVFEYWLHPARY
Sbjct: 61  HDWTECPYAHRGEKAQRRDPRKHNYAAIVCPAFRNGGCEKGDACEFAHGVFEYWLHPARY 120

Query: 121 RTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNFNAHRQRAAVTAIECPPEEKIDGVLE 180
           RTRACN+G+FCQRKVCFFAHSPE+LRPETK K ++       A  AI     + ++ + +
Sbjct: 121 RTRACNSGQFCQRKVCFFAHSPEQLRPETKLKRHY-------AYRAIRTASIDAMNDINK 177

Query: 181 TPVRENGG 189
             +  NGG
Sbjct: 181 KFISTNGG 177

The following BLAST results are available for this feature:

BLAST of Lsi07G001210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H54_ARATH	5.3e-57	55.07	Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE...	[more]
C3H23_ARATH	5.2e-44	67.27	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g259...	[more]
C3H49_ARATH	5.2e-44	69.16	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g291...	[more]
C3H35_ORYSJ	6.8e-44	56.74	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN...	[more]
C3H20_ARATH	2.6e-43	66.36	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g198...	[more]

BLAST of Lsi07G001210 vs. TrEMBL


Match Name	E-value	Identity	Description
T1SFR9_CARPA	8.8e-59	57.43	PEI1-like OS=Carica papaya GN=At5g07500-like PE=4 SV=1	[more]
W9SQQ1_9ROSA	3.4e-58	58.51	Zinc finger CCCH domain-containing protein 54 OS=Morus notabilis GN=L484_017071 ...	[more]
A0A067JF50_JATCU	2.2e-57	54.81	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26303 PE=4 SV=1	[more]
Q6V5E1_OLIPU	2.7e-55	55.45	Zn-finger transcription factor OS=Olimarabidopsis pumila GN=Op_7500 PE=4 SV=1	[more]
Q6V5F9_9BRAS	4.5e-55	54.59	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002521mg PE=4 SV=1	[more]

BLAST of Lsi07G001210 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07500.1	3.0e-58	55.07	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	2.9e-45	67.27	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	2.9e-45	69.16	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G19810.1	1.4e-44	66.36	CCCH-type zinc finger family protein	[more]
AT2G41900.1	4.2e-44	63.64	CCCH-type zinc finger protein with ARM repeat domain	[more]

BLAST of Lsi07G001210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108959\|ref\|XP_008454474.1\|	1.6e-114	88.43	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo]	[more]
gi\|449458405\|ref\|XP_004146938.1\|	4.9e-111	86.57	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis sativus]	[more]
gi\|702501182\|ref\|XP_010038410.1\|	9.7e-59	56.86	PREDICTED: zinc finger CCCH domain-containing protein 54 [Eucalyptus grandis]	[more]
gi\|530341557\|gb\|AGT21469.1\|	1.3e-58	57.43	PEI1-like [Carica papaya]	[more]
gi\|703147665\|ref\|XP_010109132.1\|	4.8e-58	58.51	Zinc finger CCCH domain-containing protein 54 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G001210.1	Lsi07G001210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 89..112 score: 2.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 88..109 score: 1.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 84..110 score: 1.2E-5coord: 119..142 score:
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 84..111 score: 13
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 83..114 score: 3.6
None	No IPR available	PANTHER	PTHR14493	UNCHARACTERIZED	coord: 39..149 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G001210	CSPI04G04180	Wild cucumber (PI 183967)	cpilsiB303
Lsi07G001210	Cucsa.094060	Cucumber (Gy14) v1	cgylsiB115
Lsi07G001210	CmaCh16G002210	Cucurbita maxima (Rimu)	cmalsiB323
Lsi07G001210	CmoCh16G002390	Cucurbita moschata (Rifu)	cmolsiB312
Lsi07G001210	Cla010708	Watermelon (97103) v1	lsiwmB441
Lsi07G001210	MELO3C017641	Melon (DHL92) v3.5.1	lsimeB454
Lsi07G001210	ClCG07G017030	Watermelon (Charleston Gray)	lsiwcgB407
Lsi07G001210	MELO3C017641.2	Melon (DHL92) v3.6.1	lsimedB471
Lsi07G001210	Cla97C07G144080	Watermelon (97103) v2	lsiwmbB406
Lsi07G001210	Bhi01G002001	Wax gourd	lsiwgoB555
Lsi07G001210	CsGy4G004090	Cucumber (Gy14) v2	cgyblsiB277
Lsi07G001210	Carg16762	Silver-seed gourd	carlsiB792
Lsi07G001210	CsaV3_4G004250	Cucumber (Chinese Long) v3	cuclsiB322

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G001210	Watermelon (97103) v2	lsiwmbB390
Lsi07G001210	Bottle gourd (USVL1VR-Ls)	lsilsiB018
Lsi07G001210	Cucurbita maxima (Rimu)	cmalsiB590
Lsi07G001210	Cucurbita maxima (Rimu)	cmalsiB696
Lsi07G001210	Cucurbita moschata (Rifu)	cmolsiB573
Lsi07G001210	Cucurbita moschata (Rifu)	cmolsiB690
Lsi07G001210	Cucurbita pepo (Zucchini)	cpelsiB182
Lsi07G001210	Cucurbita pepo (Zucchini)	cpelsiB374
Lsi07G001210	Wild cucumber (PI 183967)	cpilsiB389
Lsi07G001210	Cucumber (Chinese Long) v2	culsiB303
Lsi07G001210	Cucumber (Chinese Long) v2	culsiB385
Lsi07G001210	Melon (DHL92) v3.5.1	lsimeB428
Lsi07G001210	Watermelon (Charleston Gray)	lsiwcgB393
Lsi07G001210	Silver-seed gourd	carlsiB347
Lsi07G001210	Silver-seed gourd	carlsiB653
Lsi07G001210	Cucumber (Chinese Long) v3	cuclsiB408