MELO3C016253.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016253.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Zinc finger protein, putative
Location	chr07 : 22787468 .. 22789413 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAACCCAATAATTTCTTGTGATCGGAATTTCTCAAGTCGGAATCAGATCGTCCGCTTCTTCTTCTTTCTCTTCTTCTTCTTCTTCTCGAAATCTTGTACTGAGAAGATGACTCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCCAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTTCCTTTTCTTTGCTTCAATCTTTCTTTTGTTTCTTGTAATATATTCCATTGGATTTGAGTGTTTGTTCCAGTCTTTTAATATGGATCGTAATCGTAGTCATGTTTTGATGTCAAAACAACTGCCAACCCCATATTCAATTATCATTTTTCCTGGTCATTTTCCCGTTCTATGTATAATGCACTTGATATGGCTGTGCGTTGGTTTCAATTGATATGAAATTCATTGGTAGTTTTTTTTTTTTTTATTTATTTTTTTTTGTCTTCTTTAGTAAGCTTGAGTCCATGGATTATTTTCACGGATCATTTATTCTAGGGTTTGATAGAATTCGAAATGATTTTGTTTACTGGGAATTTTTTAAGCCTTAATTCTAGTACATATACTACGTATACTTGAGTTGTACATATACTACAATCTATTGTGACCATCTACTTGAGATACCGATTAGTGTTGCTATGATATTGTCTTGAGAAGTTTTCTTGTTGCAAGAATTGCTGTATGGTTATGTGTTGTTTGGGCGGATTAGTCAAATTGTGCTTGAGTTGAGACTGTTCAGAAAAAAAAAAGAAAAGACTTGATAGGATAGACTATAGAGGGAACCTGAGGAGGATTTTTGTTTTCTTTACTCCTTTGGACAACTAAGAAACGGAGAAGTATATGCCACAAGAAAGGAGACAACAAACTAGAGGATAGGATTGAGGGAACCCTGCCTTAAAAGAGGCTAAAGGAATACTATAAAAGGAGATCCTTCCCATTGTTAGTAATCATTAGAAGACTAACAAAAAACGAAAAAGCGAGTGATTAAAACACCAATCAGAGGCCAAACAACTGCAGATGATTAAAAGAAGTATCAAAGAAAGTAATCTTATCTTCAAAGATTATGCCTTTGGAACCTCGGCTCCTTGGAGCTTCTTCTATCAGCCAATCAATGAGCAAAAGTGGCAATGGGGAAACCAAATGATTCACATATGCACCATCACTAAGACACAAGCAACAAACGGCGGGGAAAGAGATCCATCTTGGGTATTGAGACTTTCATATCTAGCTTTTACCATCTTGGACGTTGATAATGTTGAGTTTGTCTTTTGTTTGTAAATCTGTTGTGTAGGTCCTGCTCTTCTTACACTAATTAGAATCAATGTCTATCAAACTCAAAACTTTTCTTGTAGGATTTTGTGGATTGATTTTTCTCTTGGCATGTGGGACGAAGTCATAGACTCTAAATACTGAATTCAACATAGAAGAGACTAGAGAGTGGAATAATGATAGGAAATAGATATGAATTTGTTTATCCTTGCTGTTACTCGAAAGTATATCTGTTCTTTCCCACACAACCATGTATTTGATCATCTTTTTCTTTTTATTTTAACCTCAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGTTGAATCTTCGGTTGCAAGTTGAAGTATGAGTTGCTTTATTGAAGGCATTTCAAAGTTCTCTTCTGTTCAGATCCATGAAAAAATTTCTCTGATCGTCTTCAACTTTCCTGTTCTTAAAATGTATTACTTGTAAGGGTAAAAAAACGATTGGTCATTCTGTCACTTGTAAAATAAAATAGACTCTAATATGCTTTTTCCAGATCCCCAATCTAATCTCTTCTCTGTGCCTATGAAATATGGAATCCCAAGTAACA

mRNA sequence

AAAAAAAAAACCCAATAATTTCTTGTGATCGGAATTTCTCAAGTCGGAATCAGATCGTCCGCTTCTTCTTCTTTCTCTTCTTCTTCTTCTTCTCGAAATCTTGTACTGAGAAGATGACTCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCCAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGTTGAATCTTCGGTTGCAAGTTGAAGTATGAGTTGCTTTATTGAAGGCATTTCAAAGTTCTCTTCTGTTCAGATCCATGAAAAAATTTCTCTGATCGTCTTCAACTTTCCTGTTCTTAAAATGTATTACTTGTAAGGGTAAAAAAACGATTGGTCATTCTGTCACTTGTAAAATAAAATAGACTCTAATATGCTTTTTCCAGATCCCCAATCTAATCTCTTCTCTGTGCCTATGAAATATGGAATCCCAAGTAACA

Coding sequence (CDS)

AAAAAAAACCCAATAATTTCTTGTGATCGGAATTTCTCAAGTCGGAATCAGATCGTCCGCTTCTTCTTCTTTCTCTTCTTCTTCTTCTTCTCGAAATCTTGTACTGAGAAGATGACTCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCCAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGTTGA

Protein sequence

KKNPIISCDRNFSSRNQIVRFFFFLFFFFFSKSCTEKMTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPKEKPPSESG

Homology

[Close]

BLAST of MELO3C016253.2 vs. NCBI nr
Match: CDP19520.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 126.7 bits (317), Expect = 4.6e-26
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 38  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 97
           MTRGKQKIEAQKR AE+NQKPKGSQLEARAVALKV+CPICKVQLAN+NQL DHYGSKHPK
Sbjct: 1   MTRGKQKIEAQKRKAERNQKPKGSQLEARAVALKVVCPICKVQLANENQLNDHYGSKHPK 60

Query: 98  EKPPSESG 106
           EKPPS SG
Sbjct: 61  EKPPSNSG 68

[Close]

BLAST of MELO3C016253.2 vs. NCBI nr
Match: CBI29236.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 126.3 bits (316), Expect = 6.0e-26
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 38  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 97
           MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALK+ CPICKVQLANQNQLGDHY SKHPK
Sbjct: 1   MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 98  EKPPSESG 106
           EKPPS+SG
Sbjct: 61  EKPPSDSG 68

[Close]

BLAST of MELO3C016253.2 vs. NCBI nr
Match: EEF42492.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 125.9 bits (315), Expect = 7.8e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 38  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 97
           MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLAN NQLGDHY SKHPK
Sbjct: 1   MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 98  EKPPSES 105
           EKPPSES
Sbjct: 61  EKPPSES 67

[Close]

BLAST of MELO3C016253.2 vs. NCBI nr
Match: PKI44032.1 (hypothetical protein CRG98_035562 [Punica granatum])

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 38  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 97
           MTRGKQKIEAQKRNAE+NQKPK SQLEARAV LKVICPICKVQLAN NQL DHYGSKHPK
Sbjct: 1   MTRGKQKIEAQKRNAERNQKPKASQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHPK 60

Query: 98  EKPPSESG 106
           EKPPSESG
Sbjct: 61  EKPPSESG 68

[Close]

BLAST of MELO3C016253.2 vs. NCBI nr
Match: XP_009385879.1 (PREDICTED: zinc finger protein 706-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 37  KMTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHP 96
           +MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAV LKVICPICKVQLAN NQL DHYGSKHP
Sbjct: 24  RMTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHP 83

Query: 97  KEKPPSES 105
           KEKPPSES
Sbjct: 84  KEKPPSES 91

[Close]

BLAST of MELO3C016253.2 vs. TrEMBL
Match: tr|A0A068VFB0|A0A068VFB0_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00004475001 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.0e-26
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 38  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 97
           MTRGKQKIEAQKR AE+NQKPKGSQLEARAVALKV+CPICKVQLAN+NQL DHYGSKHPK
Sbjct: 1   MTRGKQKIEAQKRKAERNQKPKGSQLEARAVALKVVCPICKVQLANENQLNDHYGSKHPK 60

Query: 98  EKPPSESG 106
           EKPPS SG
Sbjct: 61  EKPPSNSG 68

[Close]

BLAST of MELO3C016253.2 vs. TrEMBL
Match: tr|D7TFG3|D7TFG3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00160 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.0e-26
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 38  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 97
           MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALK+ CPICKVQLANQNQLGDHY SKHPK
Sbjct: 1   MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 98  EKPPSESG 106
           EKPPS+SG
Sbjct: 61  EKPPSDSG 68

[Close]

BLAST of MELO3C016253.2 vs. TrEMBL
Match: tr|B9S1M3|B9S1M3_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0866530 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.2e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 38  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 97
           MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLAN NQLGDHY SKHPK
Sbjct: 1   MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 98  EKPPSES 105
           EKPPSES
Sbjct: 61  EKPPSES 67

[Close]

BLAST of MELO3C016253.2 vs. TrEMBL
Match: tr|A0A2I0IJ83|A0A2I0IJ83_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_035562 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.8e-26
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 38  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 97
           MTRGKQKIEAQKRNAE+NQKPK SQLEARAV LKVICPICKVQLAN NQL DHYGSKHPK
Sbjct: 1   MTRGKQKIEAQKRNAERNQKPKASQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHPK 60

Query: 98  EKPPSESG 106
           EKPPSESG
Sbjct: 61  EKPPSESG 68

[Close]

BLAST of MELO3C016253.2 vs. TrEMBL
Match: tr|A0A251SUC2|A0A251SUC2_HELAN (Putative zinc finger, C2H2 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0411531 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 36  EKMTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKH 95
           E+MTRGKQKIEAQ++NAEKNQK KGSQLE RAVALKV CPICKVQLANQNQLGDHYGSKH
Sbjct: 40  ERMTRGKQKIEAQRKNAEKNQKSKGSQLEHRAVALKVTCPICKVQLANQNQLGDHYGSKH 99

Query: 96  PKEKPPSES 105
           PKEKPPS S
Sbjct: 100 PKEKPPSNS 108

The following BLAST results are available for this feature:

BLAST of MELO3C016253.2 vs. NCBI nr


Match Name	E-value	Identity	Description
CDP19520.1	4.6e-26	91.18	unnamed protein product [Coffea canephora]	[more]
CBI29236.3	6.0e-26	89.71	unnamed protein product, partial [Vitis vinifera]	[more]
EEF42492.1	7.8e-26	92.54	conserved hypothetical protein [Ricinus communis]	[more]
PKI44032.1	1.0e-25	92.65	hypothetical protein CRG98_035562 [Punica granatum]	[more]
XP_009385879.1	1.3e-25	91.18	PREDICTED: zinc finger protein 706-like [Musa acuminata subsp. malaccensis]	[more]

BLAST of MELO3C016253.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C016253.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C016253.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A068VFB0\|A0A068VFB0_COFCA	3.0e-26	91.18	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00004475001 PE=4 ...	[more]
tr\|D7TFG3\|D7TFG3_VITVI	4.0e-26	89.71	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00160 PE=4 SV=...	[more]
tr\|B9S1M3\|B9S1M3_RICCO	5.2e-26	92.54	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0866530 PE=4 SV=1	[more]
tr\|A0A2I0IJ83\|A0A2I0IJ83_PUNGR	6.8e-26	92.65	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_035562 PE=4 SV=1	[more]
tr\|A0A251SUC2\|A0A251SUC2_HELAN	1.2e-25	89.86	Putative zinc finger, C2H2 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0411531...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR007513	Uncharacterised_SERF
IPR026939	At2g23090-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016253.2.1	MELO3C016253.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..55
None	No IPR available	PFAM	PF12874	zf-met	coord: 74..94 e-value: 7.1E-4 score: 19.8
None	No IPR available	PANTHER	PTHR21213:SF0	MIP04739P-RELATED	coord: 38..104
None	No IPR available	PANTHER	PTHR21213	FAMILY NOT NAMED	coord: 38..104
None	No IPR available	SUPERFAMILY	SSF118359	Expressed protein At2g23090/F21P24.15	coord: 34..101
IPR026939	At2g23090-like	GENE3D	G3DSA:4.10.1050.10		coord: 30..103 e-value: 2.2E-10 score: 42.8
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 38..65 e-value: 3.7E-5 score: 24.4
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 74..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016253.2	CSPI04G06690	Wild cucumber (PI 183967)	cpimedB305
MELO3C016253.2	CmaCh16G005230	Cucurbita maxima (Rimu)	cmamedB350
MELO3C016253.2	CmaCh04G005850	Cucurbita maxima (Rimu)	cmamedB793
MELO3C016253.2	CmoCh16G005710	Cucurbita moschata (Rifu)	cmomedB336
MELO3C016253.2	CmoCh04G006240	Cucurbita moschata (Rifu)	cmomedB791
MELO3C016253.2	Lsi07G007540	Bottle gourd (USVL1VR-Ls)	lsimedB473
MELO3C016253.2	Cp4.1LG01g01290	Cucurbita pepo (Zucchini)	cpemedB498
MELO3C016253.2	CsGy4G006630	Cucumber (Gy14) v2	cgybmedB270
MELO3C016253.2	Cla012836	Watermelon (97103) v1	medwmB501
MELO3C016253.2	ClCG07G011300	Watermelon (Charleston Gray)	medwcgB482
MELO3C016253.2	Cla97C07G138070	Watermelon (97103) v2	medwmbB485
MELO3C016253.2	Bhi01G002325	Wax gourd	medwgoB579
MELO3C016253.2	Carg13157	Silver-seed gourd	carmedB0045
MELO3C016253.2	Carg11435	Silver-seed gourd	carmedB0663

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016253.2	Cucumber (Gy14) v1	cgymedB164
MELO3C016253.2	Cucurbita pepo (Zucchini)	cpemedB238
MELO3C016253.2	Cucumber (Chinese Long) v2	cumedB301
MELO3C016253.2	Cucumber (Chinese Long) v3	cucmedB311
MELO3C016253.2	Wax gourd	medwgoB588