ClCG07G011300 (gene) Watermelon (Charleston Gray)

NameClCG07G011300
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionZinc finger protein
LocationCG_Chr07 : 27339312 .. 27341480 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTGTGATCAGAATTTCCCAAGTCGGAATCGGATCGTCCGCTTCTTCTTCATCTTCTCCAAATCTTGAACCAAGAAGATGACCCGAGGAAAGCAGAAAATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCAGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCACCTGCCCTATTTGCAAGGTTCTTCTTCTTCTTCTCTTGAATCTTTGATTCTATAATATTGTTCCATTGGATTTGAATGTTTGTTCGTTTCTTTTAATCTGGTTCATAATCTTATTAATGTTATGATGTCAAACCAACTGACAATCCCATATCCAATTATCATTTTTTCTGCTTGTTTTCTGTTCTAGGTTATAATGCACTTGATATTTCCGTTGCGTTGGTCTCAATTGATATGAAACTCATTGGAGTTTGATTAATTTTATTCTTCTTTTTCCCTTTAAGTCAAGACCGAGTCCATAGATCATTTTTGCGGATCATTTGTTCTAGGGTTTGGTAGGATTGGTAGTAGAACGTGTTATTATGTGCTAATCGATATGGGTTTGTTTACTGGAAAATGCTCAAGCTTTAATTCAAGAATGATAGTGAGGTTTGAGTTATACATATACTTCAAACTATTGTGGCCATACTAGTTAGAAACTATGATACAATATTTTTAATGTGTAGCTCTGATACTGTCTTGAGAAGTTTTCTTGTTGCAAGAATTGCTGTATAGTTATGTGTTTGTTTGGACGGATGAGTCAAATTGTGTTTGAGTTGAGATTACTGGGAAATTAGAACTTGATACTCTATATCCAAATTCATAACTTTATTTGTAAAACTTCTGAGGATGATTTCTCTTTTCGTTTACTTCTTTGGATGACTAATTTGTCTATTAAACATTTAATTTTGAATAAGAAACAGAGAAGTAAAAACCACAAGAAAGGGAGATAACAACCTAGAGGGGACAGGATAGAGGGAACCCTGCCTTAAAAGAGGCTAAAGGAATATTAAAGAAGGAGAGCCTTCGCATTGTTAATAATCATTAGAAGACTAACAAAAAGAAAAATTGAGTGATTAAAACACCAACCAGAGACTGACAACTGCACACAATCAAAAGAAGCATAAAAATTGTAATCTTATCTTCGAAGATTATTGCCTTTCAAAATTCAGCCCCTTGGAGCTTCTATCAGCCAATTATCAACACTTTTAGGCAGACAAAGGGATATCCATATCTCATTTAAAATGTACATCCAACCTTAATAAGCAAAGTGGCAATGGGGAAAACAAATGATTCACATAAATCATCAAACAACGGAGAATAAGACCCAAGTTTGTATTTTTTTATCAACCTGTCTTGGCTATTAAGACTTCCGTTTACCATCTTGGGTGTTAATAATGTTGAGTTCAAATGTTTACTTTGTGATGTTAATCAGTTTTGTATAACTTTTATGTTTAGCAAGTGGATTGATCTCTTGCTTTTGAAGAAGTGGAATACCTAGTTTTTCATTCTTCTCCATGTGTGTTTAATCTTGTGTACATCATTTTCTTCATACACATTACTACTAGAATCCATGTCTATTGAACTTTTCTTTTAGGATTTTGTGGATTGATCTTTTTCTTGGCATGTGGGACGAAGGCATAGAGACTCTAAATATTGAATTAGACATAGAAGAGAGTGAAATAATGATAGGAAGTAAAGATGAATTCCCTATTTTGTAGTACATTATGATGATATTAAGGATTTCTCCTTGCTTTTGGTACTTGAAAGTTGCAAGTATTTTTAATTTTCCCCCCCACGACCATGTATTTGATAATCTGTTTCTTACCTCAGGTACAGCTTGCAAATCAAAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGAATCTTCGCTTGCAAGTTGAAGTATGTGTGTCACTTTATTGAAGGCATTTCAAAGTTCTCTTCTGTTCAGATCAATGAAAGTTGTTTTGATTGTCTTCAACTTTCCTGTTCTTAAAATGAGTACTTGTAAGGGTAAAAAATGATGAGTCATTCTGTCACTTGTAAAATAAATTAGACTCTAATATGCTTTTTCCAGATCTTTAGTCTAATCTTCTTTGTGCCTTTGAAAATATCGAATCCTAAGAAATGGG

mRNA sequence

CTTTTGTGATCAGAATTTCCCAAGTCGGAATCGGATCGTCCGCTTCTTCTTCATCTTCTCCAAATCTTGAACCAAGAAGATGACCCGAGGAAAGCAGAAAATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCAGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCACCTGCCCTATTTGCAAGGTACAGCTTGCAAATCAAAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGAATCTTCGCTTGCAAGTTGAAGTATGTGTGTCACTTTATTGAAGGCATTTCAAAGTTCTCTTCTGTTCAGATCAATGAAAGTTGTTTTGATTGTCTTCAACTTTCCTGTTCTTAAAATGAGTACTTGTAAGGGTAAAAAATGATGAGTCATTCTGTCACTTGTAAAATAAATTAGACTCTAATATGCTTTTTCCAGATCTTTAGTCTAATCTTCTTTGTGCCTTTGAAAATATCGAATCCTAAGAAATGGG

Coding sequence (CDS)

ATGACCCGAGGAAAGCAGAAAATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCAGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCACCTGCCCTATTTGCAAGGTACAGCTTGCAAATCAAAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGA

Protein sequence

MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPKEKPPSESG
BLAST of ClCG07G011300 vs. Swiss-Prot
Match: ZN706_CHICK (Zinc finger protein 706 OS=Gallus gallus GN=ZNF706 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-07
Identity = 28/70 (40.00%), Postives = 38/70 (54.29%), Query Frame = 1

Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQ----LEARAVALKVTCPICKVQLANQNQLGDHYAS 60
          M RG+QKI++Q++NA+K  +QK  Q      A   AL  TC +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAEQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

BLAST of ClCG07G011300 vs. Swiss-Prot
Match: ZN706_HUMAN (Zinc finger protein 706 OS=Homo sapiens GN=ZNF706 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07
Identity = 28/70 (40.00%), Postives = 38/70 (54.29%), Query Frame = 1

Query: 1  MTRGKQKIEAQKRNAEKN----QKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYAS 60
          M RG+QKI++Q++NA+K     +KQ   Q  A   AL  TC +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

BLAST of ClCG07G011300 vs. Swiss-Prot
Match: ZN706_MOUSE (Zinc finger protein 706 OS=Mus musculus GN=Znf706 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07
Identity = 28/70 (40.00%), Postives = 38/70 (54.29%), Query Frame = 1

Query: 1  MTRGKQKIEAQKRNAEKN----QKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYAS 60
          M RG+QKI++Q++NA+K     +KQ   Q  A   AL  TC +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

BLAST of ClCG07G011300 vs. TrEMBL
Match: D7TFG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.3e-28
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1

Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQK KGSQ EARAVALK+TCPICKVQLANQNQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

BLAST of ClCG07G011300 vs. TrEMBL
Match: M5WB57_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013644mg PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-27
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 1

Query: 1   MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
           MTRGKQKIEAQKRNAEKNQKQKGSQ EARAVALK+TCPICKVQLAN  QLGDHYASKHP+
Sbjct: 44  MTRGKQKIEAQKRNAEKNQKQKGSQFEARAVALKITCPICKVQLANPKQLGDHYASKHPR 103

Query: 61  EKPPSES 68
           EKPP+ES
Sbjct: 104 EKPPAES 110

BLAST of ClCG07G011300 vs. TrEMBL
Match: V4V2J0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003066mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-27
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAE+NQK KGSQ+EARAVALKV+CPICK QLANQNQ+GDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKGSQIEARAVALKVSCPICKAQLANQNQIGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPTES 67

BLAST of ClCG07G011300 vs. TrEMBL
Match: V7CL75_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G125300g PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-27
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 1

Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQK KGSQLEARAV LKV CPICKVQLANQNQL DHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKSKGSQLEARAVGLKVICPICKVQLANQNQLADHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPAES 67

BLAST of ClCG07G011300 vs. TrEMBL
Match: B9S1M3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.8e-27
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1

Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQK KGSQLEARAVALKV CPICK QLAN NQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

BLAST of ClCG07G011300 vs. NCBI nr
Match: gi|296085504|emb|CBI29236.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-28
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1

Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQK KGSQ EARAVALK+TCPICKVQLANQNQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

BLAST of ClCG07G011300 vs. NCBI nr
Match: gi|595849731|ref|XP_007209783.1| (hypothetical protein PRUPE_ppa013644mg [Prunus persica])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-27
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 1

Query: 1   MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
           MTRGKQKIEAQKRNAEKNQKQKGSQ EARAVALK+TCPICKVQLAN  QLGDHYASKHP+
Sbjct: 44  MTRGKQKIEAQKRNAEKNQKQKGSQFEARAVALKITCPICKVQLANPKQLGDHYASKHPR 103

Query: 61  EKPPSES 68
           EKPP+ES
Sbjct: 104 EKPPAES 110

BLAST of ClCG07G011300 vs. NCBI nr
Match: gi|593790150|ref|XP_007158114.1| (hypothetical protein PHAVU_002G125300g [Phaseolus vulgaris])

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-27
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 1

Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQK KGSQLEARAV LKV CPICKVQLANQNQL DHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKSKGSQLEARAVGLKVICPICKVQLANQNQLADHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPAES 67

BLAST of ClCG07G011300 vs. NCBI nr
Match: gi|567880541|ref|XP_006432829.1| (hypothetical protein CICLE_v10003066mg [Citrus clementina])

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-27
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1

Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAE+NQK KGSQ+EARAVALKV+CPICK QLANQNQ+GDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKGSQIEARAVALKVSCPICKAQLANQNQIGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPTES 67

BLAST of ClCG07G011300 vs. NCBI nr
Match: gi|223540934|gb|EEF42492.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 127.9 bits (320), Expect = 6.9e-27
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1

Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQK KGSQLEARAVALKV CPICK QLAN NQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ZN706_CHICK1.6e-0740.00Zinc finger protein 706 OS=Gallus gallus GN=ZNF706 PE=3 SV=1[more]
ZN706_HUMAN2.1e-0740.00Zinc finger protein 706 OS=Homo sapiens GN=ZNF706 PE=1 SV=1[more]
ZN706_MOUSE2.1e-0740.00Zinc finger protein 706 OS=Mus musculus GN=Znf706 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
D7TFG3_VITVI3.3e-2889.71Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=... [more]
M5WB57_PRUPE1.6e-2791.04Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013644mg PE=4 SV=1[more]
V4V2J0_9ROSI2.2e-2789.55Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003066mg PE=4 SV=1[more]
V7CL75_PHAVU2.2e-2792.54Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G125300g PE=4 SV=1[more]
B9S1M3_RICCO4.8e-2791.04Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|296085504|emb|CBI29236.3|4.8e-2889.71unnamed protein product [Vitis vinifera][more]
gi|595849731|ref|XP_007209783.1|2.4e-2791.04hypothetical protein PRUPE_ppa013644mg [Prunus persica][more]
gi|593790150|ref|XP_007158114.1|3.1e-2792.54hypothetical protein PHAVU_002G125300g [Phaseolus vulgaris][more]
gi|567880541|ref|XP_006432829.1|3.1e-2789.55hypothetical protein CICLE_v10003066mg [Citrus clementina][more]
gi|223540934|gb|EEF42492.1|6.9e-2791.04conserved hypothetical protein [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007087Zinc finger, C2H2
IPR007513Uncharacterised_SERF
IPR026939At2g23090-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G011300.1ClCG07G011300.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 37..58
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 35..63
score:
IPR007513Uncharacterised protein family SERFPFAMPF044194F5coord: 1..28
score: 7.
IPR026939At2g23090-likeGENE3DG3DSA:4.10.1050.10coord: 1..65
score: 4.6
IPR026939At2g23090-likePANTHERPTHR21213FAMILY NOT NAMEDcoord: 1..66
score: 2.3
IPR026939At2g23090-likeunknownSSF118359Expressed protein At2g23090/F21P24.15coord: 1..64
score: 1.01
NoneNo IPR availableunknownCoilCoilcoord: 5..25
scor
NoneNo IPR availablePFAMPF12874zf-metcoord: 36..57
score: 2.