Lsi07G007540 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G007540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Zinc finger protein, putative
Location	chr07 : 8245720 .. 8247688 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCTATTTGCAAGGTTCTTCTTCTTCTCTTGAATCTTTGTTTCGATAAATATGTTCCATTAGATTTGAGTGTTTGTTCGTTTCTTTGAATCTGGATCATAATCTTATTAATGTTATGACGTCAAACCAACTGACAAGTGACAACCCCATATCCAATCATCATTTTTCCTGCTTGTTTTCTATTCTAGGTTATAATGCACTTGATATGCTGTTGCGTTGACCTAGATTGATAGGAAACTCATTGGAGTTTGATTAATTTTGGTCTTCTTTTTCCCTTTAAGTCGAGGCTTGAGTCCATAGATCATTTTCGTGGATCATTTGTTCTAGGGTTTGGTAGGATTGGTAGTAGAACGTGTTATTATGTTCTAATCGACATGGGTTTGTTCACTGGAAAATGCTCAAGCCTTAATTCTAGACGATAGTGAACATATACTGCAAACTATTGTGGCCAATCTACTTGAGATATTAATTGGAAACTATGATACAATATTTTTAATGTGTAGCTATAATATTATCTTGAGAAATTTTCTTGTTGCAAGAATTGCTGTATAGTTATATCCAAATTCATAACTTTATTTGTAAAACTTCCGAGGAGGATTTTTCTTTTCTTTTACTCCTTTGGATACCTAATTTGTCTGTTGAGCAGTTAACTTTTAATAAGCAATAGAGAAGTATATACCACAAGAAAGGGAGATAACAACCTAGAGGACAGGATAAAGGGATCCCTGCCTTAAAAGAGGCTAGAGGAATAAGAGGAATATTAAAAAAGGAGAGTCTTCCCATTGTTAATAATCATTAGAAGACTAACAAAAAGAAAATCGAGTGATTAAAACACTAACCAGAGGCTGACAACTGCACACAATCAAAAGAAGTAATCTTATCTTCAAAGATTATTCCCTTTGAAACTTCAGCCCCTTGGAGCTTCTATCAGCCAATTATCAACATTTTTAGGCAGATAAAGGGATATCCATAGCTCATTTAAAATGTATATCTAACCTCAATAAGCAAAGTGGCAATGGGGAAAAAAATGATTCACATATGCACCATCTATAAGACATAAGCAGCAAACGGGGAATAAGACCCAATTCTGTTTTTTTTAGCAACCTGTTTTCGGTATTAAGACTTCCGTTTACCATCTTGGGTGTTAATAATGTTGAGTTCAAATGTTTACTTTGTGTTGTTAATAAGTTTTGTATAAATTTTATGTTTAGCAAGTGGATTGATCTCTTGCTTTTGAAGAAGTGGAATACCTAGTTTTTCATTCTTCTCCATGTGTTCTTTAATCTGTGTACATCACTCTTCATACACGTTACTACTAGAATCCATGTCTATCAAACTTTTCTTGTAGGATTTTGTGGATTGATCTTTTTCTTGGCAAGTGGGAGACTAAATATTGAATTAGACATAGGAGAAATTTTTCTAGTACTACGGGAGTACCATACTCCCTGTGTTCACACTATAAATCTGTCTCTACAAATATTAGTGGACTACACATTAATGTCAGTGGGTCCCACCAGGGTGTTGACGTGGTATACAATAAATGGAGGGAGTATGAAAAATTTTCCATACTCGCATAGTATAAGAAATTTTCTCTAGACATAGAAGAGAGTGGAATAATGATAGGAAATAAAGATGAATTCCTCTATTTTGAAGTTTCCGAGAATAATACTTCATGCATTATGATGATCTTAAGGATTTCTCGCTTTCGGTACTTGAAAGTATATTTTATTTTTTCCCCCCACGACCATGTATTTGATCATCTATTTCTTACCTCAGGTACAGCTTGCAAATCAGAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGA

mRNA sequence

ATGACCCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCTATTTGCAAGGTACAGCTTGCAAATCAGAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGA

Coding sequence (CDS)

ATGACCCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCTATTTGCAAGGTACAGCTTGCAAATCAGAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGA

Protein sequence

MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPKEKPPSESG

Homology

[Close]

BLAST of Lsi07G007540 vs. TrEMBL
Match: B9S1M3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLAN NQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of Lsi07G007540 vs. TrEMBL
Match: D7TFG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-26
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALK+ CPICKVQLANQNQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of Lsi07G007540 vs. TrEMBL
Match: V4V2J0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003066mg PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.3e-26
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAE+NQKPKGSQ+EARAVALKV CPICK QLANQNQ+GDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKGSQIEARAVALKVSCPICKAQLANQNQIGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPTES 67

[Close]

BLAST of Lsi07G007540 vs. TrEMBL
Match: V7CL75_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G125300g PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.9e-26
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQK KGSQLEARAV LKVICPICKVQLANQNQL DHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKSKGSQLEARAVGLKVICPICKVQLANQNQLADHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPAES 67

[Close]

BLAST of Lsi07G007540 vs. TrEMBL
Match: A0A068VFB0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004475001 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.0e-26
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKR AE+NQKPKGSQLEARAVALKV+CPICKVQLAN+NQL DHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRKAERNQKPKGSQLEARAVALKVVCPICKVQLANENQLNDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS SG
Sbjct: 61 EKPPSNSG 68

[Close]

BLAST of Lsi07G007540 vs. NCBI nr
Match: gi|223540934|gb|EEF42492.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-26
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLAN NQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of Lsi07G007540 vs. NCBI nr
Match: gi|296085504|emb|CBI29236.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-26
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALK+ CPICKVQLANQNQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of Lsi07G007540 vs. NCBI nr
Match: gi|567880541|ref|XP_006432829.1| (hypothetical protein CICLE_v10003066mg [Citrus clementina])

HSP 1 Score: 124.4 bits (311), Expect = 7.6e-26
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAE+NQKPKGSQ+EARAVALKV CPICK QLANQNQ+GDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKGSQIEARAVALKVSCPICKAQLANQNQIGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPTES 67

[Close]

BLAST of Lsi07G007540 vs. NCBI nr
Match: gi|593790150|ref|XP_007158114.1| (hypothetical protein PHAVU_002G125300g [Phaseolus vulgaris])

HSP 1 Score: 124.0 bits (310), Expect = 9.9e-26
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQK KGSQLEARAV LKVICPICKVQLANQNQL DHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKSKGSQLEARAVGLKVICPICKVQLANQNQLADHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPAES 67

[Close]

BLAST of Lsi07G007540 vs. NCBI nr
Match: gi|661876383|emb|CDP19520.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKR AE+NQKPKGSQLEARAVALKV+CPICKVQLAN+NQL DHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRKAERNQKPKGSQLEARAVALKVVCPICKVQLANENQLNDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS SG
Sbjct: 61 EKPPSNSG 68

The following BLAST results are available for this feature:

BLAST of Lsi07G007540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G007540 vs. TrEMBL


Match Name	E-value	Identity	Description
B9S1M3_RICCO	1.4e-26	94.03	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1	[more]
D7TFG3_VITVI	1.8e-26	89.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=...	[more]
V4V2J0_9ROSI	5.3e-26	91.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003066mg PE=4 SV=1	[more]
V7CL75_PHAVU	6.9e-26	94.03	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G125300g PE=4 SV=1	[more]
A0A068VFB0_COFCA	9.0e-26	89.71	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004475001 PE=4 SV=1	[more]

BLAST of Lsi07G007540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G007540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|223540934\|gb\|EEF42492.1\|	2.0e-26	94.03	conserved hypothetical protein [Ricinus communis]	[more]
gi\|296085504\|emb\|CBI29236.3\|	2.6e-26	89.71	unnamed protein product [Vitis vinifera]	[more]
gi\|567880541\|ref\|XP_006432829.1\|	7.6e-26	91.04	hypothetical protein CICLE_v10003066mg [Citrus clementina]	[more]
gi\|593790150\|ref\|XP_007158114.1\|	9.9e-26	94.03	hypothetical protein PHAVU_002G125300g [Phaseolus vulgaris]	[more]
gi\|661876383\|emb\|CDP19520.1\|	1.3e-25	89.71	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR026939	At2g23090-like
IPR007513	Uncharacterised_SERF
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G007540.1	Lsi07G007540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 37..58 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 35..63 score:
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 1..28 score: 1.
IPR026939	At2g23090-like	GENE3D	G3DSA:4.10.1050.10		coord: 1..65 score: 8.6
IPR026939	At2g23090-like	PANTHER	PTHR21213	FAMILY NOT NAMED	coord: 1..66 score: 1.6
IPR026939	At2g23090-like	unknown	SSF118359	Expressed protein At2g23090/F21P24.15	coord: 1..64 score: 2.88
None	No IPR available	PFAM	PF12874	zf-met	coord: 37..57 score: 4.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G007540	CSPI04G06690	Wild cucumber (PI 183967)	cpilsiB304
Lsi07G007540	CmaCh04G005850	Cucurbita maxima (Rimu)	cmalsiB695
Lsi07G007540	CmoCh04G006240	Cucurbita moschata (Rifu)	cmolsiB689
Lsi07G007540	CmoCh16G005710	Cucurbita moschata (Rifu)	cmolsiB314
Lsi07G007540	Cla012836	Watermelon (97103) v1	lsiwmB434
Lsi07G007540	MELO3C016253	Melon (DHL92) v3.5.1	lsimeB455
Lsi07G007540	ClCG07G011300	Watermelon (Charleston Gray)	lsiwcgB412
Lsi07G007540	MELO3C016253.2	Melon (DHL92) v3.6.1	lsimedB473
Lsi07G007540	Cla97C07G138070	Watermelon (97103) v2	lsiwmbB411
Lsi07G007540	Bhi01G002325	Wax gourd	lsiwgoB563
Lsi07G007540	Cp4.1LG01g01290	Cucurbita pepo (Zucchini)	cpelsiB372
Lsi07G007540	CsGy4G006630	Cucumber (Gy14) v2	cgyblsiB278
Lsi07G007540	Carg13157	Silver-seed gourd	carlsiB043
Lsi07G007540	Carg11435	Silver-seed gourd	carlsiB596

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G007540	Wax gourd	lsiwgoB544
Lsi07G007540	Cucumber (Gy14) v1	cgylsiB161
Lsi07G007540	Cucurbita maxima (Rimu)	cmalsiB325
Lsi07G007540	Cucurbita pepo (Zucchini)	cpelsiB184
Lsi07G007540	Cucumber (Chinese Long) v2	culsiB304
Lsi07G007540	Cucumber (Chinese Long) v3	cuclsiB323