Cla97C07G138070 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G138070
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Zinc finger protein, putative
Location	Cla97Chr07 : 25710998 .. 25712837 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGAGGAAAGCAGAAAATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCAGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCACCTGCCCTATTTGCAAGGTTCTTCTTCTTCTTCTCTTGAATCTTTGATTCTATAATATTGTTCCATTGGATTTGAATGTTTGTTCGTTTCTTTTAATCTGGTTCATAATCTTATTAATGTTATGATGTCAAACCAACTGACAATCCCATATCCAATTATCATTTTTTCTGCTTGTTTTCTGTTCTAGGTTATAATGCACTTGATATTTCCGTTGCGTTGGTCTCAATTGATATGAAACTCATTGGAGTTTGATTAATTTTATTCTTCTTTTTCCCTTTAAGTCAAGACCGAGTCCATAGATCATTTTTGCGGATCATTTGTTCTAGGGTTTGGTAGGATTGGTAGTAGAACGTGTTATTATGTGCTAATCGATATGGGTTTGTTTACTGGAAAATGCTCAAGCTTTAATTCAAGAATGATAGTGAGGTTTGAGTTATACATATACTTCAAACTATTGTGGCCATACTAGTTAGAAACTATGATACAATATTTTTAATGTGTAGCTCTGATACTGTCTTGAGAAGTTTTCTTGTTGCAAGAATTGCTGTATAGTTATGTGTTTGTTTGGACGGATGAGTCAAATTGTGTTTGAGTTGAGATTACTGGGAAATTAGAACTTGATACTCTATATCCAAATTCATAACTTTATTTGTAAAACTTCTGAGGATGATTTCTCTTTTCGTTTACTTCTTTGGATGACTAATTTGTCTATTAAACATTTAATTTTGAATAAGAAACAGAGAAGTAAAAACCACAAGAAAGGGAGATAACAACCTAGAGGGGACAGGATAGAGGGAACCCTGCCTTAAAAGAGGCTAAAGGAATATTAAAGAAGGAGAGCCTTCGCATTGTTAATAATCATTAGAAGACTAACAAAAAGAAAAATTGAGTGATTAAAACACCAACCAGAGACTGACAACTGCACACAATCAAAAGAAGCATAAAAATTGTAATCTTATCTTCGAAGATTATTGCCTTTCAAAATTCAGCCCCTTGGAGCTTCTATCAGCCAATTATCAACACTTTTAGGCAGACAAAGGGATATCCATATCTCATTTAAAATGTACATCCAACCTTAATAAGCAAAGTGGCAATGGGGAAAACAAATGATTCACATAAATCATCAAACAACGGAGAATAAGACCCAAGTTTGTATTTTTTTATCAACCTGTCTTGGCTATTAAGACTTCCGTTTACCATCTTGGGTGTTAATAATGTTGAGTTCAAATGTTTACTTTGTGATGTTAATCAGTTTTGTATAACTTTTATGTTTAGCAAGTGGATTGATCTCTTGCTTTTGAAGAAGTGGAATACCTAGTTTTTCATTCTTCTCCATGTGTGTTTAATCTTGTGTACATCATTTTCTTCATACACATTACTACTAGAATCCATGTCTATTGAACTTTTCTTTTAGGATTTTGTGGATTGATCTTTTTCTTGGCATGTGGGACGAAGGCATAGAGACTCTAAATATTGAATTAGACATAGAAGAGAGTGAAATAATGATAGGAAGTAAAGATGAATTCCCTATTTTGTAGTACATTATGATGATATTAAGGATTTCTCCTTGCTTTTGGTACTTGAAAGTTGCAAGTATTTTTAATTTTCCCCCCCACGACCATGTATTTGATAATCTGTTTCTTACCTCAGGTACAGCTTGCAAATCAAAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGA

mRNA sequence

ATGACCCGAGGAAAGCAGAAAATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCAGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCACCTGCCCTATTTGCAAGGTACAGCTTGCAAATCAAAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGA

Coding sequence (CDS)

ATGACCCGAGGAAAGCAGAAAATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCAGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCACCTGCCCTATTTGCAAGGTACAGCTTGCAAATCAAAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGA

Protein sequence

MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPKEKPPSESG

Homology

[Close]

BLAST of Cla97C07G138070 vs. NCBI nr
Match: POE54699.1 (zinc finger protein 706 [Quercus suber] >POE75073.1 zinc finger protein 706 [Quercus suber])

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQK KGSQ EARAVALKVTCPICKVQLANQNQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKAKGSQFEARAVALKVTCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSES 68
          EKPPS+S
Sbjct: 61 EKPPSDS 67

[Close]

BLAST of Cla97C07G138070 vs. NCBI nr
Match: CBI29236.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 124.0 bits (310), Expect = 1.9e-25
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQK KGSQ EARAVALK+TCPICKVQLANQNQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of Cla97C07G138070 vs. NCBI nr
Match: PIA43191.1 (hypothetical protein AQUCO_02000555v1 [Aquilegia coerulea])

HSP 1 Score: 122.1 bits (305), Expect = 7.3e-25
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQK+NAEKNQK KGSQ EARAVALKVTCPICKVQLANQNQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQKKNAEKNQKSKGSQFEARAVALKVTCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSE 67
          EKPPS+
Sbjct: 61 EKPPSD 66

[Close]

BLAST of Cla97C07G138070 vs. NCBI nr
Match: ONI05660.1 (hypothetical protein PRUPE_5G017600 [Prunus persica] >ONI05661.1 hypothetical protein PRUPE_5G017600 [Prunus persica] >PQQ18994.1 hypothetical protein Pyn_27336 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 121.7 bits (304), Expect = 9.6e-25
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQKQKGSQ EARAVALK+TCPICKVQLAN  QLGDHYASKHP+
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKQKGSQFEARAVALKITCPICKVQLANPKQLGDHYASKHPR 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPAES 67

[Close]

BLAST of Cla97C07G138070 vs. NCBI nr
Match: RDY12199.1 (hypothetical protein CR513_03040, partial [Mucuna pruriens])

HSP 1 Score: 121.7 bits (304), Expect = 9.6e-25
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1   MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
           MTRGKQKIEAQKRNAEKNQK KGSQ+EARAV LKVTCPICKVQLANQNQL DHYASKHPK
Sbjct: 47  MTRGKQKIEAQKRNAEKNQKSKGSQIEARAVGLKVTCPICKVQLANQNQLVDHYASKHPK 106

Query: 61  EKPPSES 68
           EKPP+ES
Sbjct: 107 EKPPTES 113

[Close]

BLAST of Cla97C07G138070 vs. TrEMBL
Match: tr|A0A2P4HEJ3|A0A2P4HEJ3_QUESU (Zinc finger protein 706 OS=Quercus suber OX=58331 GN=CFP56_25059 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.8e-26
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQK KGSQ EARAVALKVTCPICKVQLANQNQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKAKGSQFEARAVALKVTCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSES 68
          EKPPS+S
Sbjct: 61 EKPPSDS 67

[Close]

BLAST of Cla97C07G138070 vs. TrEMBL
Match: tr|D7TFG3|D7TFG3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00160 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-25
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQK KGSQ EARAVALK+TCPICKVQLANQNQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of Cla97C07G138070 vs. TrEMBL
Match: tr|A0A2G5DI50|A0A2G5DI50_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000555v1 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.9e-25
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQK+NAEKNQK KGSQ EARAVALKVTCPICKVQLANQNQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQKKNAEKNQKSKGSQFEARAVALKVTCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSE 67
          EKPPS+
Sbjct: 61 EKPPSD 66

[Close]

BLAST of Cla97C07G138070 vs. TrEMBL
Match: tr|A0A251P3Q7|A0A251P3Q7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G017600 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.3e-25
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQKQKGSQ EARAVALK+TCPICKVQLAN  QLGDHYASKHP+
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKQKGSQFEARAVALKITCPICKVQLANPKQLGDHYASKHPR 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPAES 67

[Close]

BLAST of Cla97C07G138070 vs. TrEMBL
Match: tr|M5WB57|M5WB57_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa013644mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.3e-25
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1   MTRGKQKIEAQKRNAEKNQKQKGSQLEARAVALKVTCPICKVQLANQNQLGDHYASKHPK 60
           MTRGKQKIEAQKRNAEKNQKQKGSQ EARAVALK+TCPICKVQLAN  QLGDHYASKHP+
Sbjct: 44  MTRGKQKIEAQKRNAEKNQKQKGSQFEARAVALKITCPICKVQLANPKQLGDHYASKHPR 103

Query: 61  EKPPSES 68
           EKPP+ES
Sbjct: 104 EKPPAES 110

The following BLAST results are available for this feature:

BLAST of Cla97C07G138070 vs. NCBI nr


Match Name	E-value	Identity	Description
POE54699.1	1.5e-25	94.03	zinc finger protein 706 [Quercus suber] >POE75073.1 zinc finger protein 706 [Que...	[more]
CBI29236.3	1.9e-25	89.71	unnamed protein product, partial [Vitis vinifera]	[more]
PIA43191.1	7.3e-25	92.42	hypothetical protein AQUCO_02000555v1 [Aquilegia coerulea]	[more]
ONI05660.1	9.6e-25	91.04	hypothetical protein PRUPE_5G017600 [Prunus persica] >ONI05661.1 hypothetical pr...	[more]
RDY12199.1	9.6e-25	92.54	hypothetical protein CR513_03040, partial [Mucuna pruriens]	[more]

BLAST of Cla97C07G138070 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P4HEJ3\|A0A2P4HEJ3_QUESU	9.8e-26	94.03	Zinc finger protein 706 OS=Quercus suber OX=58331 GN=CFP56_25059 PE=4 SV=1	[more]
tr\|D7TFG3\|D7TFG3_VITVI	1.3e-25	89.71	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00160 PE=4 SV=...	[more]
tr\|A0A2G5DI50\|A0A2G5DI50_AQUCA	4.9e-25	92.42	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000555v1 PE=4...	[more]
tr\|A0A251P3Q7\|A0A251P3Q7_PRUPE	6.3e-25	91.04	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G017600 PE=4 SV=1	[more]
tr\|M5WB57\|M5WB57_PRUPE	6.3e-25	91.04	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa013644mg PE=4 SV=1	[more]

BLAST of Cla97C07G138070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C07G138070 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR026939	At2g23090-like
IPR007513	Uncharacterised_SERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G138070.1	Cla97C07G138070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25
None	No IPR available	PFAM	PF12874	zf-met	coord: 36..57 e-value: 5.8E-5 score: 23.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR21213:SF0	MIP04739P-RELATED	coord: 1..67
None	No IPR available	PANTHER	PTHR21213	FAMILY NOT NAMED	coord: 1..67
None	No IPR available	SUPERFAMILY	SSF118359	Expressed protein At2g23090/F21P24.15	coord: 1..64
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 1..28 e-value: 7.2E-6 score: 26.7
IPR026939	At2g23090-like	GENE3D	G3DSA:4.10.1050.10		coord: 1..66 e-value: 2.6E-11 score: 45.8
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 37..58
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 35..63 score: 8.85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C07G138070	Cla012836	Watermelon (97103) v1	wmwmbB173
Cla97C07G138070	MELO3C016253	Melon (DHL92) v3.5.1	mewmbB491
Cla97C07G138070	ClCG07G011300	Watermelon (Charleston Gray)	wcgwmbB307
Cla97C07G138070	CSPI04G06690	Wild cucumber (PI 183967)	cpiwmbB331
Cla97C07G138070	CmaCh04G005850	Cucurbita maxima (Rimu)	cmawmbB782
Cla97C07G138070	CmaCh16G005230	Cucurbita maxima (Rimu)	cmawmbB350
Cla97C07G138070	CmoCh04G006240	Cucurbita moschata (Rifu)	cmowmbB756
Cla97C07G138070	CmoCh16G005710	Cucurbita moschata (Rifu)	cmowmbB335
Cla97C07G138070	Lsi07G007540	Bottle gourd (USVL1VR-Ls)	lsiwmbB411
Cla97C07G138070	CsGy4G006630	Cucumber (Gy14) v2	cgybwmbB304
Cla97C07G138070	MELO3C016253.2	Melon (DHL92) v3.6.1	medwmbB485
Cla97C07G138070	Carg13157	Silver-seed gourd	carwmbB0043
Cla97C07G138070	Carg11435	Silver-seed gourd	carwmbB0682
Cla97C07G138070	Bhi01G002325	Wax gourd	wgowmbB215

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C07G138070	Cucumber (Gy14) v1	cgywmbB165
Cla97C07G138070	Cucumber (Chinese Long) v3	cucwmbB329
Cla97C07G138070	Cucumber (Chinese Long) v2	cuwmbB321
Cla97C07G138070	Wax gourd	wgowmbB219