CSPI04G06690 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G06690
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Zinc finger, C2H2
Location	Chr4 : 4692965 .. 4695039 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGAAGAAGAAGAAGAAGAAAAAGAGAATTAAAGGAAAAGGGCAATGAAGAAGAGGGAATGTGGGGAGGGGATAAGTTTTGTGTCTAAATTGGGTCAACTTATTTTCTTTCAGTAATTATTTATTTATTTATCATTCCTAAAATTAAAATAAATAAAACCAATCATTCTTGTGATCGGAATTTCTCTAGTCGGACTCAGATCCTCCGCTTCTTCTTCTTCTTCTTCTCGAAATCTTGAACGGAGAAGATGACTCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCCAAAGGCTCTCAGCTCGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTTCCTTTTTCTTTGCTTCAATCTTTCTTTCTTTCTTTCTTATAATTGTATTCCTTTGGATTTTAGTGTTCTTCCTCTCTTTTAATCTGTATCGTAATCGTACTCCTGTTTTGATGTCATAACAACTGCCAACCCCATATTCAATTATCATTTTTCCGTTCTTATGTATAGTGCACTTGATATGGCTGTGCGTTGGTTTCAATTGATATGAAATTCGTTGGAGTTTCATTAGTTTTTTGTCTTCTTTTCTCAAGGCTTGAGTACATAGATTATTTTCACGGATCATTTATTCTAGGGTTTGAAAGAATTCGAAATGGTTTTGTTTACTGGAAATTTTTTAAGCGTTAATTCTAGATGATAGTGAGGTTTGAGTTATACATATAGTACAATCTATTGTGACCAACTACTTGAGATACCGATTAGAAACTATGATACATTATTTTCTGTGTTGCTATGATCTTGTCTTGAGAAATTTTCTTGTTGCAAGAATTGCTGTATGGTTATGTGTTTGTTTGGGCGGATTAGTCAAATTATGCTTGAGTTGAGATTGTTGGGGGAAAAAAATACTCGATAGGATAGACTATAGAGGGAACCTGATGAGGATTTCTCTTTTTGTTTACTCCTTTGGACAACTAAGAAACGGAGAAGTATATGCCACAAGAAAGGGAGACAACAAATTAGAGGATAGGATTGAGGGAACCCTGCCTTAAAAGAGGCGAAAGGAATATTATAAAAAGAGATCCTTCCCATTGTTAATAATCATTAGAAGACTAACAAAAAACGAAAAAGCGAGTGATTAAAACACCAACCAGAGGCCAAACAACTGCAGATGATTAAAAGAAGTATCATAGGAAATAATCTTATTTTCAAAGATTATGCCTTTGGAACCTCGGCCCCTTGGAGCTTCTTCTACCAGCCAATCAATGAGCAAGGTGGCAATGGGGAAAACAAATGATTCACATATGCACCATCTCTAAAAACAAACGACGGGGGATGAGATCCATCTTGAGTGTCCATCTTGGGACGTTGATAATGTTGAGTTTGTCTTTTGTGGGTTAATCTGCTGTGGATTGATTTTTCTCTTGGCTTGTGGGACGAAGTCATAGAGACTCTAAATATTGAATTCAACATAGAAGAGAGTGGAATAATGATAGGAAATTAGATATGAATTTGTTTATCCTTGCTTTTGATACTTGAAAGTATATCTGTTCTTCCCCCACGACCGTGTATTTGATCATCTATTTTCTTTTATTCTAACCTCAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCCCCATCAGAATCTGGTTGAATCTTCGCTTGCAATTTGAAGTATGAGTGTTGCTTTATTGAAGGCATTTCACAGTTCTCTTCTGTTCAGATCAATGAAAAAATTTCTCTGATCGTCTTCAACTTTCCTGTTCTTAAAATGTATTACTTGTAAGGGTAAAAAACGATTGGTCATTCTGTCACTTGTAAAATAAAAATAGACTCTAATATGCTCTTTTCCAGATCCTCAATCTAATATCTCCTCTGTGCCTATAAAATATCGAATCCTAAGAAATGTTTTCTTTTTTTTTTGTACATTATCAACTAAATAACATGTATCGAGTGATGGAGATGGAAGGTAGTAAGATCCTTAATTCAAGCTGCACTTAGTGAAGGGGA

mRNA sequence

ATGACTCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCCAAAGGCTCTCAGCTCGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCCCCATCAGAATCTGGTTGA

Coding sequence (CDS)

ATGACTCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCCAAAGGCTCTCAGCTCGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCCCCATCAGAATCTGGTTGA

Homology

[Close]

BLAST of CSPI04G06690 vs. TrEMBL
Match: A0A068VFB0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004475001 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.3e-27
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQKR AE+NQKPKGSQLEARAVALKV+CPICKVQLAN+NQL DHYGSKHPK
Sbjct: 1  MTRGKQKIEAQKRKAERNQKPKGSQLEARAVALKVVCPICKVQLANENQLNDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS SG
Sbjct: 61 EKPPSNSG 68

[Close]

BLAST of CSPI04G06690 vs. TrEMBL
Match: D7TFG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-26
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALK+ CPICKVQLANQNQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of CSPI04G06690 vs. TrEMBL
Match: B9S1M3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLAN NQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of CSPI04G06690 vs. TrEMBL
Match: M0U697_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAV LKVICPICKVQLAN NQL DHYGSKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of CSPI04G06690 vs. TrEMBL
Match: V4V2J0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003066mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.0e-26
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQKRNAE+NQKPKGSQ+EARAVALKV CPICK QLANQNQ+GDHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKGSQIEARAVALKVSCPICKAQLANQNQIGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPTES 67

[Close]

BLAST of CSPI04G06690 vs. NCBI nr
Match: gi|661876383|emb|CDP19520.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-26
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQKR AE+NQKPKGSQLEARAVALKV+CPICKVQLAN+NQL DHYGSKHPK
Sbjct: 1  MTRGKQKIEAQKRKAERNQKPKGSQLEARAVALKVVCPICKVQLANENQLNDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS SG
Sbjct: 61 EKPPSNSG 68

[Close]

BLAST of CSPI04G06690 vs. NCBI nr
Match: gi|296085504|emb|CBI29236.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALK+ CPICKVQLANQNQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of CSPI04G06690 vs. NCBI nr
Match: gi|223540934|gb|EEF42492.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLAN NQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of CSPI04G06690 vs. NCBI nr
Match: gi|695077112|ref|XP_009385879.1| (PREDICTED: zinc finger protein 706-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 124.8 bits (312), Expect = 5.9e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAV LKVICPICKVQLAN NQL DHYGSKHPK
Sbjct: 25 MTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHPK 84

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 85 EKPPSES 91

[Close]

BLAST of CSPI04G06690 vs. NCBI nr
Match: gi|567880541|ref|XP_006432829.1| (hypothetical protein CICLE_v10003066mg [Citrus clementina])

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-25
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQKRNAE+NQKPKGSQ+EARAVALKV CPICK QLANQNQ+GDHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKGSQIEARAVALKVSCPICKAQLANQNQIGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPTES 67

The following BLAST results are available for this feature:

BLAST of CSPI04G06690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G06690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A068VFB0_COFCA	8.3e-27	91.18	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004475001 PE=4 SV=1	[more]
D7TFG3_VITVI	1.1e-26	89.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=...	[more]
B9S1M3_RICCO	1.8e-26	92.54	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1	[more]
M0U697_MUSAM	4.1e-26	92.54	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
V4V2J0_9ROSI	7.0e-26	89.55	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003066mg PE=4 SV=1	[more]

BLAST of CSPI04G06690 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G06690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661876383\|emb\|CDP19520.1\|	1.2e-26	91.18	unnamed protein product [Coffea canephora]	[more]
gi\|296085504\|emb\|CBI29236.3\|	1.6e-26	89.71	unnamed protein product [Vitis vinifera]	[more]
gi\|223540934\|gb\|EEF42492.1\|	2.7e-26	92.54	conserved hypothetical protein [Ricinus communis]	[more]
gi\|695077112\|ref\|XP_009385879.1\|	5.9e-26	92.54	PREDICTED: zinc finger protein 706-like [Musa acuminata subsp. malaccensis]	[more]
gi\|567880541\|ref\|XP_006432829.1\|	1.0e-25	89.55	hypothetical protein CICLE_v10003066mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2
IPR007513	Uncharacterised_SERF
IPR026939	At2g23090-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G06690.1	CSPI04G06690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 37..58 scor
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 1..28 score: 1.
IPR026939	At2g23090-like	GENE3D	G3DSA:4.10.1050.10		coord: 1..65 score: 8.0
IPR026939	At2g23090-like	PANTHER	PTHR21213	FAMILY NOT NAMED	coord: 1..66 score: 8.6
IPR026939	At2g23090-like	unknown	SSF118359	Expressed protein At2g23090/F21P24.15	coord: 1..64 score: 1.44
None	No IPR available	PFAM	PF12874	zf-met	coord: 37..57 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G06690	Cla012836	Watermelon (97103) v1	cpiwmB308
CSPI04G06690	MELO3C016253	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G06690	ClCG07G011300	Watermelon (Charleston Gray)	cpiwcgB341
CSPI04G06690	Lsi07G007540	Bottle gourd (USVL1VR-Ls)	cpilsiB304
CSPI04G06690	MELO3C016253.2	Melon (DHL92) v3.6.1	cpimedB305
CSPI04G06690	Cla97C07G138070	Watermelon (97103) v2	cpiwmbB331
CSPI04G06690	Bhi01G002325	Wax gourd	cpiwgoB384
CSPI04G06690	CmaCh04G005850	Cucurbita maxima (Rimu)	cmacpiB714
CSPI04G06690	CmoCh16G005710	Cucurbita moschata (Rifu)	cmocpiB332
CSPI04G06690	CmoCh04G006240	Cucurbita moschata (Rifu)	cmocpiB707
CSPI04G06690	Cp4.1LG01g01290	Cucurbita pepo (Zucchini)	cpecpiB396
CSPI04G06690	CsGy4G006630	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G06690	Carg13157	Silver-seed gourd	carcpiB0051
CSPI04G06690	Carg11435	Silver-seed gourd	carcpiB0687

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G06690	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G06690	Wax gourd	cpiwgoB367
CSPI04G06690	Cucumber (Gy14) v1	cgycpiB147
CSPI04G06690	Cucurbita maxima (Rimu)	cmacpiB342
CSPI04G06690	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G06690	Cucurbita pepo (Zucchini)	cpecpiB223