Cp4.1LG01g01290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g01290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger protein
LocationCp4.1LG01 : 3026445 .. 3030758 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGAATCTAGGAAGATAGAGGGATAGTTTTGTCATTTTGATCCAGTCAACTTGGTTTCAATGGTTTCAATATTTATTGTGATAAAATAAAAGTGATGCATGGTTTTTTTGTGATCAGAATTTCCCAAATCGGATCGTCCGCTTCTTCTTCTCGAAATTTTGAAGGAAGAAGATGACCCGAGGAAAACAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAGAATCAGAAGCCCAAGGGCTCACAACTCGAGGCCAGAGCCGTTGCCCTTAAAGTTATCTGCCCTATTTGCAAGGTTCTCATCCTCTCCAATCTTCGTTGCTCTTATACCACTCTATTGGATTCGAGTGTTCATTTGTTCATTTTTAATCTCGATTCTGGTCTTAATTAATGTTATGTGTTGAAGCAACTGGCAATCCCATATCTGGCAACCAAAATGAAATCATCCTTTTTCTTGCCTGTTCTCTGTTCTTGCTTTTAAATACACTTCATATTTCTTGTTCTGTTGTTGGTCTCCGTTGACAAGAAATTCGTTGGAATATGATCAATTTGGGGTTTTATTTTCACTTTCTGCTACTAAGTACGCTGCCCCCAAGTGGGTGGATTGTGAGATCCCACGTCGGTTGGAAAGGAGAACGAAATATTGCTTATAGAGTGTGGAAACATCTCTCTACTTTGAGAGCTTATGCTCAAAGTGGATAATAGCTTACCATTGTAGGGTTCGTGATTCCTAACATGGTATTAGAATTATGTCCTTGACTTAGCCATGTCAATATAGAATCCTCAAATGTTGAACAAAAATGTTGAACAAAGAAGTTGTGAGCCTCGAAAGTATACTCAAAAGTGACTCAAATGTCGAACAAATGGTGTACTTTGTTTGAGGACTCTAGAGAAGGAATCGAGCCTCGATTAAGGGGAGGTTGTTCGAGGGTTCCATAGACCTCAGAGGAGACTATATAGTGTACTTTATTCGAGGGGAGGATTGTTGAAGATTGTTGGAAGCGAGTCCCACGTTGGCTAGGAATGATCATGGGTTTATAAGTAAGGACTTGTATTAGAGCATATTATTTGTCTTAACCACCACGATTTTGTTTACTGGAGAAGGTTCGAGCCTTAAAGCTAGATAATATGAGGCCGGATTCTAAACTTCAAGCTGTTCTGGCTATGTTGTAGCCTTGATATTGTCCTGAGAGGTCTTGTTGTGAGAAATGCTGTATAGTCGTGTGTTTGTTGTATCAGATTATGATCGAGTTCATGTTGTTGGGAGAAAAGAACTTGATACTCTATAAGTCCAAAATCACACCTCTATTGGTAAAACTTCAGAGGACGATTTCTTTTCTCTTCTCATTTGGGTTCCTAATTTGTCTGTTGAGTTCAAATTTTTTCTTTGTGATTGCTTGTCTTGGATGTTACCCAGTTCTCTACAAACTATTATGTTCAGCAAGTGGATTGATCTTGTTCTTGGGAAGAAGTGGAATACCCTGATTTTTCATTCTTCTCCATGTGTGGATTGATCAGGAGAGAAAAATAAACGACTATTCTGTTCCATCGCTTTCTCCTTAAGAGTAATCGGCTCCTGGTGAGAACTAAAATCCTGGTTGGTGCAAATTGAGATCTTGAAGCTAAGGTTAAGGTCCTTCCTAAAGCGGAACATAGTTTCTTGTTCAAATCCAAAGTCTTTAGTCTCCACCCGGGCTAAGGCTGTAGTTCCAGATCCGGAATCTTAGACAATGCAGCTTAATATAGCATAGCGGATAATCTGATTCAGCTTAAAAGAAGAAAGGGGCATCTTTCGCTTGACTTTTGGGTTGTGAGTGCATGCATCCATCATGGTCAGGGCTTTCACAGGTACCTTGTACGTGATTAAGGTGAAGCTTTGTTTGATCTTGATTCTAAACAAGACTGGAAATAGTCCTTCAGTCATTGCTCAAATTCAATGTTGATTCGAGCAGAATCCATTCATCTTGCTCTTCATATACATTACATACTAGAATCCAAGTTTATCATATTTCTCTTCTAGAACTTTGTGAATTGATCTCTTTCTCGGGGGCGAAAATCACGAAACATACAGTCAATGTGGCCATAAGTGTTGAACTAGACATAGGAGGGAGTAGAAGAGTGAAGGAAAAATGAAGCTAAATTTCTCTGTTTTGAAGTTTCCGAGTATAATACATTGTGCATTATGATAATATGAACAAACTTTTCTTGCTTTTGGTACTTGCAAGATGAATTCAATAATCTTGTTCTTACCTCAGGTACAACTAGCAAATCATAATCAATTGGGCGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCGGGCTGAATCGTCGCTTGCACGTTGAAGTATGTGTGCCACTACATATTGAAGGCATTTCGAAGTTCTCTTATGTTCAGATCAATGAAAGTTGCTGGTATTGTCTTCATATTTATTGTTCTTAAAATGTACTAGAAAGAATGATGATTTGTTCCGTCACTTGTAAAATAAACCAAACTCTAGCATGCTTATTCCACATTCCCAGTCTAATTTTCTCTGTGCCTTAGAAAATATGGAATCCTTGAAAGAAATGGCCTTGTTTCCAGCATAAAATGATACAAATGAATAGGCTAATCATCACAGAAGAGAATAGGAAGGTGATCATAGTAATAAGATTCTTAATTCAAGCTAAACTTCATAGGTTTTCTTCAATACTGATAATGTACATAACAATGTATTCTTTTTTCTTCCAAGAGCTATAAATTCCTGGGAGAAAACTGTTCAATCTCTGTATGCATACAATCAGGCTAGACACTTGTGAAAAATTGCATATGTGATATGTACTATCAGCCACAAATCTGAATTTTTTATATCTACCATGCCTTCAAAAATAGTGTTGCTGTAACTACATTCTTCCTTTTTTGCTTCAACTATATCTCATTCTCGGGAATCAGTACCGTTTTTTATCTCATCGTCTCATAAATTATTTTCGCGGTTGAGCTTGTTTAAAAGGTCTGTTAAGAGAGCATCCATTCCTTGAGCACGGATATCTTGTCTTTTCTTTCTCTGTTCTTCTCTTTCCCTCCAAGCTTTCTCAGTCATTAACCTCTCCCTCTCGAGCTTCTCCATCGAGTCACGCCATTCCTGCTCCAACATTCGTCGGTTGTTGTAATGTCTCTCAAGTATTTCCCTCCATTCCATTTCCATCCTCTGCTGCCACTGAAAGAAGCCCTTCAACAACTCTAGGATTTCATTACTAACCGAGCTACTTGAACGTTTAGAACCAGCCGTTCTTAAAGACTTTGCTGGGTACTGAGTTCCTATAGCCTTTCCCTTCTGTGAGTTGCTTTGAGTTGGGATCTCCTCCTCACTTTCTTCTTCATCAAGTTCTTTGAGATCTGAATATTCTTCTAAACTTCTCTCCCTCCCTCTTTTCTTTGTTGCACTAGAACCTGCTTCAGGTTCAAGGAGCAATCGGTGCATAGCTTTCTCCCTTACGGCAAATACTGCACGGATTTCCTCAAAAAATGGGCATTGCCAGCCAAACTCTTTATGGGTTGTCTCCTTCCCCTGTACAACCATTATAAAATTAGAAGCATATGACGGTGATTAAACAACATAAACAATGCCAACTGCCTCAACTTCTAGGGGTATCTTTAGCTCATTGAGTTTTGGGGCCAAAATTGGACTTGACAAGTCAAACTAATTCTAGGCTATGTTATTACTACAATTCTATGAAGAGTTTAGTCGGAATTACATGAAACGGATCTAAAAGTAAAAGATGTCTTTTCTACAAATACTAATGAACGAGAATTACTGCATATATGGGAAGCAATTAAATGTTTCGCCACTTATGACCAACCTCCCACATAAAGAAAGGGTTCAGGTTAATTTTTCACTCGCAATGTAGACCACACTCGATGTTTGAACTGTAATGGCACTGCAAGTTCTTGTTTGGAAACTTTAGTTTAAGAAGGTGCTTTAAAGAGAGAGCAGGAAGCTCAGTTAAGATGGGTTTTAGTGAACGAGAAACTTCCTGAATTAACTGCGCTTGTTTTTATCATAGGAGCTCATTGATCTCATGGATAAAACAAGAGTTAGAATGACATATATCTGGTTTTTTTTCACGTGTTAATGTAACGGCCCAAGATCACTGCTAGCAGATATTGTCCTCTTTGAGCTTTTTTCCACATGTTAATGTAACGGCCCAAGCTCACTTCTAGCAGATATTGTTTTCTTTGAACTTTTTTCCACATGTTAATGTAACGACTCAAGCTCACTGCTAGCAGATATTGTCATTTTTGGATTTTTCCTTCTGAGCTTC

mRNA sequence

TGAGAATCTAGGAAGATAGAGGGATAGTTTTGTCATTTTGATCCAGTCAACTTGGTTTCAATGGTTTCAATATTTATTGTGATAAAATAAAAGTGATGCATGGTTTTTTTGTGATCAGAATTTCCCAAATCGGATCGTCCGCTTCTTCTTCTCGAAATTTTGAAGGAAGAAGATGACCCGAGGAAAACAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAGAATCAGAAGCCCAAGGGCTCACAACTCGAGGCCAGAGCCGTTGCCCTTAAAGTTATCTGCCCTATTTGCAAGGTACAACTAGCAAATCATAATCAATTGGGCGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCGGGCTGAATCGTCGCTTGCACGTTGAAGTATGTGTGCCACTACATATTGAAGGCATTTCGAAGTTCTCTTATGTTCAGATCAATGAAAGTTGCTGGTATTGTCTTCATATTTATTGTTCTTAAAATGTACTAGAAAGAATGATGATTTGTTCCGTCACTTGTAAAATAAACCAAACTCTAGCATGCTTATTCCACATTCCCAGTCTAATTTTCTCTGTGCCTTAGAAAATATGGAATCCTTGAAAGAAATGGCCTTGTTTCCAGCATAAAATGATACAAATGAATAGGCTAATCATCACAGAAGAGAATAGGAAGGTGATCATAGTAATAAGATTCTTAATTCAAGCTAAACTTCATAGGTTTTCTTCAATACTGATAATGTACATAACAATGTATTCTTTTTTCTTCCAAGAGCTATAAATTCCTGGGAGAAAACTGTTCAATCTCTGTATGCATACAATCAGGCTAGACACTTGTGAAAAATTGCATATGTGATATGTACTATCAGCCACAAATCTGAATTTTTTATATCTACCATGCCTTCAAAAATAGTGTTGCTGTAACTACATTCTTCCTTTTTTGCTTCAACTATATCTCATTCTCGGGAATCAGTACCGTTTTTTATCTCATCGTCTCATAAATTATTTTCGCGGTTGAGCTTGTTTAAAAGGTCTGTTAAGAGAGCATCCATTCCTTGAGCACGGATATCTTGTCTTTTCTTTCTCTGTTCTTCTCTTTCCCTCCAAGCTTTCTCAGTCATTAACCTCTCCCTCTCGAGCTTCTCCATCGAGTCACGCCATTCCTGCTCCAACATTCGTCGGTTGTTGTAATGTCTCTCAAGTATTTCCCTCCATTCCATTTCCATCCTCTGCTGCCACTGAAAGAAGCCCTTCAACAACTCTAGGATTTCATTACTAACCGAGCTACTTGAACGTTTAGAACCAGCCGTTCTTAAAGACTTTGCTGGGTACTGAGTTCCTATAGCCTTTCCCTTCTGTGAGTTGCTTTGAGTTGGGATCTCCTCCTCACTTTCTTCTTCATCAAGTTCTTTGAGATCTGAATATTCTTCTAAACTTCTCTCCCTCCCTCTTTTCTTTGTTGCACTAGAACCTGCTTCAGGTTCAAGGAGCAATCGGTGCATAGCTTTCTCCCTTACGGCAAATACTGCACGGATTTCCTCAAAAAATGGGCATTGCCAGCCAAACTCTTTATGGGTTGTCTCCTTCCCCTGTACAACCATTATAAAATTAGAAGCATATGACGGTGATTAAACAACATAAACAATGCCAACTGCCTCAACTTCTAGGGGTATCTTTAGCTCATTGAGTTTTGGGGCCAAAATTGGACTTGACAAGTCAAACTAATTCTAGGCTATGTTATTACTACAATTCTATGAAGAGTTTAGTCGGAATTACATGAAACGGATCTAAAAGTAAAAGATGTCTTTTCTACAAATACTAATGAACGAGAATTACTGCATATATGGGAAGCAATTAAATGTTTCGCCACTTATGACCAACCTCCCACATAAAGAAAGGGTTCAGGTTAATTTTTCACTCGCAATGTAGACCACACTCGATGTTTGAACTGTAATGGCACTGCAAGTTCTTGTTTGGAAACTTTAGTTTAAGAAGGTGCTTTAAAGAGAGAGCAGGAAGCTCAGTTAAGATGGGTTTTAGTGAACGAGAAACTTCCTGAATTAACTGCGCTTGTTTTTATCATAGGAGCTCATTGATCTCATGGATAAAACAAGAGTTAGAATGACATATATCTGGTTTTTTTTCACGTGTTAATGTAACGGCCCAAGATCACTGCTAGCAGATATTGTCCTCTTTGAGCTTTTTTCCACATGTTAATGTAACGGCCCAAGCTCACTTCTAGCAGATATTGTTTTCTTTGAACTTTTTTCCACATGTTAATGTAACGACTCAAGCTCACTGCTAGCAGATATTGTCATTTTTGGATTTTTCCTTCTGAGCTTC

Coding sequence (CDS)

ATGACCCGAGGAAAACAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAGAATCAGAAGCCCAAGGGCTCACAACTCGAGGCCAGAGCCGTTGCCCTTAAAGTTATCTGCCCTATTTGCAAGGTACAACTAGCAAATCATAATCAATTGGGCGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCGGGCTGA

Protein sequence

MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPKEKPPSESG
Homology
[Close]
BLAST of Cp4.1LG01g01290 vs. TrEMBL
Match: B9S1M3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-27
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]
BLAST of Cp4.1LG01g01290 vs. TrEMBL
Match: M0S062_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-26
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 1 

Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAV LK+ CPICKVQLANHNQL DHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKISCPICKVQLANHNQLMDHYASKHPK 60

Query: 61 EKPPSESG 69
          EKPPSESG
Sbjct: 61 EKPPSESG 68

[Close]
BLAST of Cp4.1LG01g01290 vs. TrEMBL
Match: M0U697_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1 

Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAV LKVICPICKVQLANHNQL DHY SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]
BLAST of Cp4.1LG01g01290 vs. TrEMBL
Match: D7TFG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.3e-26
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1 

Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALK+ CPICKVQLAN NQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]
BLAST of Cp4.1LG01g01290 vs. TrEMBL
Match: A0A068VFB0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004475001 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-25
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 1 

Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQKR AE+NQKPKGSQLEARAVALKV+CPICKVQLAN NQL DHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRKAERNQKPKGSQLEARAVALKVVCPICKVQLANENQLNDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS SG
Sbjct: 61 EKPPSNSG 68

[Close]
BLAST of Cp4.1LG01g01290 vs. NCBI nr
Match: gi|223540934|gb|EEF42492.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]
BLAST of Cp4.1LG01g01290 vs. NCBI nr
Match: gi|695077112|ref|XP_009385879.1| (PREDICTED: zinc finger protein 706-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 124.8 bits (312), Expect = 5.8e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1 

Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAV LKVICPICKVQLANHNQL DHY SKHPK
Sbjct: 25 MTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHPK 84

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 85 EKPPSES 91

[Close]
BLAST of Cp4.1LG01g01290 vs. NCBI nr
Match: gi|296085504|emb|CBI29236.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 124.4 bits (311), Expect = 7.6e-26
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1 

Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALK+ CPICKVQLAN NQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]
BLAST of Cp4.1LG01g01290 vs. NCBI nr
Match: gi|661876383|emb|CDP19520.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 1 

Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQKR AE+NQKPKGSQLEARAVALKV+CPICKVQLAN NQL DHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRKAERNQKPKGSQLEARAVALKVVCPICKVQLANENQLNDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS SG
Sbjct: 61 EKPPSNSG 68

[Close]
BLAST of Cp4.1LG01g01290 vs. NCBI nr
Match: gi|567880541|ref|XP_006432829.1| (hypothetical protein CICLE_v10003066mg [Citrus clementina])

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-25
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 1 

Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAE+NQKPKGSQ+EARAVALKV CPICK QLAN NQ+GDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKGSQIEARAVALKVSCPICKAQLANQNQIGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPTES 67

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g01290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g01290 vs. TrEMBL
Match NameE-valueIdentityDescription
B9S1M3_RICCO1.3e-2795.52Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1[more]
M0S062_MUSAM1.8e-2691.18Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
M0U697_MUSAM4.1e-2692.54Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
D7TFG3_VITVI5.3e-2688.24Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=... [more]
A0A068VFB0_COFCA1.2e-2589.71Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004475001 PE=4 SV=1[more]
BLAST of Cp4.1LG01g01290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g01290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223540934|gb|EEF42492.1|1.8e-2795.52conserved hypothetical protein [Ricinus communis][more]
gi|695077112|ref|XP_009385879.1|5.8e-2692.54PREDICTED: zinc finger protein 706-like [Musa acuminata subsp. malaccensis][more]
gi|296085504|emb|CBI29236.3|7.6e-2688.24unnamed protein product [Vitis vinifera][more]
gi|661876383|emb|CDP19520.1|1.7e-2589.71unnamed protein product [Coffea canephora][more]
gi|567880541|ref|XP_006432829.1|2.2e-2589.55hypothetical protein CICLE_v10003066mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR026939At2g23090-like
IPR007513Uncharacterised_SERF
IPR007087Zinc finger, C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g01290.1Cp4.1LG01g01290.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 37..58
scor
IPR007513Uncharacterised protein family SERFPFAMPF044194F5coord: 1..28
score: 1.
IPR026939At2g23090-likeGENE3DG3DSA:4.10.1050.10coord: 1..65
score: 1.6
IPR026939At2g23090-likePANTHERPTHR21213FAMILY NOT NAMEDcoord: 1..66
score: 1.2
IPR026939At2g23090-likeunknownSSF118359Expressed protein At2g23090/F21P24.15coord: 1..64
score: 3.92
NoneNo IPR availablePFAMPF12874zf-metcoord: 37..57
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g01290CmaCh04G005850Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g01290CmoCh16G005710Cucurbita moschata (Rifu)cmocpeB315
Cp4.1LG01g01290CmoCh04G006240Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g01290Cla012836Watermelon (97103) v1cpewmB412
Cp4.1LG01g01290MELO3C016253Melon (DHL92) v3.5.1cpemeB426
Cp4.1LG01g01290ClCG07G011300Watermelon (Charleston Gray)cpewcgB411
Cp4.1LG01g01290CSPI04G06690Wild cucumber (PI 183967)cpecpiB396
Cp4.1LG01g01290Lsi07G007540Bottle gourd (USVL1VR-Ls)cpelsiB372
Cp4.1LG01g01290MELO3C016253.2Melon (DHL92) v3.6.1cpemedB498
Cp4.1LG01g01290Bhi01G002325Wax gourdcpewgoB0521
Cp4.1LG01g01290CsGy4G006630Cucumber (Gy14) v2cgybcpeB501
Cp4.1LG01g01290Carg13157Silver-seed gourdcarcpeB0061
Cp4.1LG01g01290Carg11435Silver-seed gourdcarcpeB0929
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g01290Cp4.1LG14g02760Cucurbita pepo (Zucchini)cpecpeB236
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g01290Cucumber (Chinese Long) v3cpecucB0496
Cp4.1LG01g01290Wax gourdcpewgoB0509
Cp4.1LG01g01290Cucumber (Gy14) v1cgycpeB0270
Cp4.1LG01g01290Cucurbita maxima (Rimu)cmacpeB353
Cp4.1LG01g01290Cucumber (Chinese Long) v2cpecuB399