Cp4.1LG01g01290.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAGAATCTAGGAAGATAGAGGGATAGTTTTGTCATTTTGATCCAGTCAACTTGGTTTCAATGGTTTCAATATTTATTGTGATAAAATAAAAGTGATGCATGGTTTTTTTGTGATCAGAATTTCCCAAATCGGATCGTCCGCTTCTTCTTCTCGAAATTTTGAAGGAAGAAGATGACCCGAGGAAAACAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAGAATCAGAAGCCCAAGGGCTCACAACTCGAGGCCAGAGCCGTTGCCCTTAAAGTTATCTGCCCTATTTGCAAGGTTCTCATCCTCTCCAATCTTCGTTGCTCTTATACCACTCTATTGGATTCGAGTGTTCATTTGTTCATTTTTAATCTCGATTCTGGTCTTAATTAATGTTATGTGTTGAAGCAACTGGCAATCCCATATCTGGCAACCAAAATGAAATCATCCTTTTTCTTGCCTGTTCTCTGTTCTTGCTTTTAAATACACTTCATATTTCTTGTTCTGTTGTTGGTCTCCGTTGACAAGAAATTCGTTGGAATATGATCAATTTGGGGTTTTATTTTCACTTTCTGCTACTAAGTACGCTGCCCCCAAGTGGGTGGATTGTGAGATCCCACGTCGGTTGGAAAGGAGAACGAAATATTGCTTATAGAGTGTGGAAACATCTCTCTACTTTGAGAGCTTATGCTCAAAGTGGATAATAGCTTACCATTGTAGGGTTCGTGATTCCTAACATGGTATTAGAATTATGTCCTTGACTTAGCCATGTCAATATAGAATCCTCAAATGTTGAACAAAAATGTTGAACAAAGAAGTTGTGAGCCTCGAAAGTATACTCAAAAGTGACTCAAATGTCGAACAAATGGTGTACTTTGTTTGAGGACTCTAGAGAAGGAATCGAGCCTCGATTAAGGGGAGGTTGTTCGAGGGTTCCATAGACCTCAGAGGAGACTATATAGTGTACTTTATTCGAGGGGAGGATTGTTGAAGATTGTTGGAAGCGAGTCCCACGTTGGCTAGGAATGATCATGGGTTTATAAGTAAGGACTTGTATTAGAGCATATTATTTGTCTTAACCACCACGATTTTGTTTACTGGAGAAGGTTCGAGCCTTAAAGCTAGATAATATGAGGCCGGATTCTAAACTTCAAGCTGTTCTGGCTATGTTGTAGCCTTGATATTGTCCTGAGAGGTCTTGTTGTGAGAAATGCTGTATAGTCGTGTGTTTGTTGTATCAGATTATGATCGAGTTCATGTTGTTGGGAGAAAAGAACTTGATACTCTATAAGTCCAAAATCACACCTCTATTGGTAAAACTTCAGAGGACGATTTCTTTTCTCTTCTCATTTGGGTTCCTAATTTGTCTGTTGAGTTCAAATTTTTTCTTTGTGATTGCTTGTCTTGGATGTTACCCAGTTCTCTACAAACTATTATGTTCAGCAAGTGGATTGATCTTGTTCTTGGGAAGAAGTGGAATACCCTGATTTTTCATTCTTCTCCATGTGTGGATTGATCAGGAGAGAAAAATAAACGACTATTCTGTTCCATCGCTTTCTCCTTAAGAGTAATCGGCTCCTGGTGAGAACTAAAATCCTGGTTGGTGCAAATTGAGATCTTGAAGCTAAGGTTAAGGTCCTTCCTAAAGCGGAACATAGTTTCTTGTTCAAATCCAAAGTCTTTAGTCTCCACCCGGGCTAAGGCTGTAGTTCCAGATCCGGAATCTTAGACAATGCAGCTTAATATAGCATAGCGGATAATCTGATTCAGCTTAAAAGAAGAAAGGGGCATCTTTCGCTTGACTTTTGGGTTGTGAGTGCATGCATCCATCATGGTCAGGGCTTTCACAGGTACCTTGTACGTGATTAAGGTGAAGCTTTGTTTGATCTTGATTCTAAACAAGACTGGAAATAGTCCTTCAGTCATTGCTCAAATTCAATGTTGATTCGAGCAGAATCCATTCATCTTGCTCTTCATATACATTACATACTAGAATCCAAGTTTATCATATTTCTCTTCTAGAACTTTGTGAATTGATCTCTTTCTCGGGGGCGAAAATCACGAAACATACAGTCAATGTGGCCATAAGTGTTGAACTAGACATAGGAGGGAGTAGAAGAGTGAAGGAAAAATGAAGCTAAATTTCTCTGTTTTGAAGTTTCCGAGTATAATACATTGTGCATTATGATAATATGAACAAACTTTTCTTGCTTTTGGTACTTGCAAGATGAATTCAATAATCTTGTTCTTACCTCAGGTACAACTAGCAAATCATAATCAATTGGGCGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCGGGCTGAATCGTCGCTTGCACGTTGAAGTATGTGTGCCACTACATATTGAAGGCATTTCGAAGTTCTCTTATGTTCAGATCAATGAAAGTTGCTGGTATTGTCTTCATATTTATTGTTCTTAAAATGTACTAGAAAGAATGATGATTTGTTCCGTCACTTGTAAAATAAACCAAACTCTAGCATGCTTATTCCACATTCCCAGTCTAATTTTCTCTGTGCCTTAGAAAATATGGAATCCTTGAAAGAAATGGCCTTGTTTCCAGCATAAAATGATACAAATGAATAGGCTAATCATCACAGAAGAGAATAGGAAGGTGATCATAGTAATAAGATTCTTAATTCAAGCTAAACTTCATAGGTTTTCTTCAATACTGATAATGTACATAACAATGTATTCTTTTTTCTTCCAAGAGCTATAAATTCCTGGGAGAAAACTGTTCAATCTCTGTATGCATACAATCAGGCTAGACACTTGTGAAAAATTGCATATGTGATATGTACTATCAGCCACAAATCTGAATTTTTTATATCTACCATGCCTTCAAAAATAGTGTTGCTGTAACTACATTCTTCCTTTTTTGCTTCAACTATATCTCATTCTCGGGAATCAGTACCGTTTTTTATCTCATCGTCTCATAAATTATTTTCGCGGTTGAGCTTGTTTAAAAGGTCTGTTAAGAGAGCATCCATTCCTTGAGCACGGATATCTTGTCTTTTCTTTCTCTGTTCTTCTCTTTCCCTCCAAGCTTTCTCAGTCATTAACCTCTCCCTCTCGAGCTTCTCCATCGAGTCACGCCATTCCTGCTCCAACATTCGTCGGTTGTTGTAATGTCTCTCAAGTATTTCCCTCCATTCCATTTCCATCCTCTGCTGCCACTGAAAGAAGCCCTTCAACAACTCTAGGATTTCATTACTAACCGAGCTACTTGAACGTTTAGAACCAGCCGTTCTTAAAGACTTTGCTGGGTACTGAGTTCCTATAGCCTTTCCCTTCTGTGAGTTGCTTTGAGTTGGGATCTCCTCCTCACTTTCTTCTTCATCAAGTTCTTTGAGATCTGAATATTCTTCTAAACTTCTCTCCCTCCCTCTTTTCTTTGTTGCACTAGAACCTGCTTCAGGTTCAAGGAGCAATCGGTGCATAGCTTTCTCCCTTACGGCAAATACTGCACGGATTTCCTCAAAAAATGGGCATTGCCAGCCAAACTCTTTATGGGTTGTCTCCTTCCCCTGTACAACCATTATAAAATTAGAAGCATATGACGGTGATTAAACAACATAAACAATGCCAACTGCCTCAACTTCTAGGGGTATCTTTAGCTCATTGAGTTTTGGGGCCAAAATTGGACTTGACAAGTCAAACTAATTCTAGGCTATGTTATTACTACAATTCTATGAAGAGTTTAGTCGGAATTACATGAAACGGATCTAAAAGTAAAAGATGTCTTTTCTACAAATACTAATGAACGAGAATTACTGCATATATGGGAAGCAATTAAATGTTTCGCCACTTATGACCAACCTCCCACATAAAGAAAGGGTTCAGGTTAATTTTTCACTCGCAATGTAGACCACACTCGATGTTTGAACTGTAATGGCACTGCAAGTTCTTGTTTGGAAACTTTAGTTTAAGAAGGTGCTTTAAAGAGAGAGCAGGAAGCTCAGTTAAGATGGGTTTTAGTGAACGAGAAACTTCCTGAATTAACTGCGCTTGTTTTTATCATAGGAGCTCATTGATCTCATGGATAAAACAAGAGTTAGAATGACATATATCTGGTTTTTTTTCACGTGTTAATGTAACGGCCCAAGATCACTGCTAGCAGATATTGTCCTCTTTGAGCTTTTTTCCACATGTTAATGTAACGGCCCAAGCTCACTTCTAGCAGATATTGTTTTCTTTGAACTTTTTTCCACATGTTAATGTAACGACTCAAGCTCACTGCTAGCAGATATTGTCATTTTTGGATTTTTCCTTCTGAGCTTC TGAGAATCTAGGAAGATAGAGGGATAGTTTTGTCATTTTGATCCAGTCAACTTGGTTTCAATGGTTTCAATATTTATTGTGATAAAATAAAAGTGATGCATGGTTTTTTTGTGATCAGAATTTCCCAAATCGGATCGTCCGCTTCTTCTTCTCGAAATTTTGAAGGAAGAAGATGACCCGAGGAAAACAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAGAATCAGAAGCCCAAGGGCTCACAACTCGAGGCCAGAGCCGTTGCCCTTAAAGTTATCTGCCCTATTTGCAAGGTACAACTAGCAAATCATAATCAATTGGGCGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCGGGCTGAATCGTCGCTTGCACGTTGAAGTATGTGTGCCACTACATATTGAAGGCATTTCGAAGTTCTCTTATGTTCAGATCAATGAAAGTTGCTGGTATTGTCTTCATATTTATTGTTCTTAAAATGTACTAGAAAGAATGATGATTTGTTCCGTCACTTGTAAAATAAACCAAACTCTAGCATGCTTATTCCACATTCCCAGTCTAATTTTCTCTGTGCCTTAGAAAATATGGAATCCTTGAAAGAAATGGCCTTGTTTCCAGCATAAAATGATACAAATGAATAGGCTAATCATCACAGAAGAGAATAGGAAGGTGATCATAGTAATAAGATTCTTAATTCAAGCTAAACTTCATAGGTTTTCTTCAATACTGATAATGTACATAACAATGTATTCTTTTTTCTTCCAAGAGCTATAAATTCCTGGGAGAAAACTGTTCAATCTCTGTATGCATACAATCAGGCTAGACACTTGTGAAAAATTGCATATGTGATATGTACTATCAGCCACAAATCTGAATTTTTTATATCTACCATGCCTTCAAAAATAGTGTTGCTGTAACTACATTCTTCCTTTTTTGCTTCAACTATATCTCATTCTCGGGAATCAGTACCGTTTTTTATCTCATCGTCTCATAAATTATTTTCGCGGTTGAGCTTGTTTAAAAGGTCTGTTAAGAGAGCATCCATTCCTTGAGCACGGATATCTTGTCTTTTCTTTCTCTGTTCTTCTCTTTCCCTCCAAGCTTTCTCAGTCATTAACCTCTCCCTCTCGAGCTTCTCCATCGAGTCACGCCATTCCTGCTCCAACATTCGTCGGTTGTTGTAATGTCTCTCAAGTATTTCCCTCCATTCCATTTCCATCCTCTGCTGCCACTGAAAGAAGCCCTTCAACAACTCTAGGATTTCATTACTAACCGAGCTACTTGAACGTTTAGAACCAGCCGTTCTTAAAGACTTTGCTGGGTACTGAGTTCCTATAGCCTTTCCCTTCTGTGAGTTGCTTTGAGTTGGGATCTCCTCCTCACTTTCTTCTTCATCAAGTTCTTTGAGATCTGAATATTCTTCTAAACTTCTCTCCCTCCCTCTTTTCTTTGTTGCACTAGAACCTGCTTCAGGTTCAAGGAGCAATCGGTGCATAGCTTTCTCCCTTACGGCAAATACTGCACGGATTTCCTCAAAAAATGGGCATTGCCAGCCAAACTCTTTATGGGTTGTCTCCTTCCCCTGTACAACCATTATAAAATTAGAAGCATATGACGGTGATTAAACAACATAAACAATGCCAACTGCCTCAACTTCTAGGGGTATCTTTAGCTCATTGAGTTTTGGGGCCAAAATTGGACTTGACAAGTCAAACTAATTCTAGGCTATGTTATTACTACAATTCTATGAAGAGTTTAGTCGGAATTACATGAAACGGATCTAAAAGTAAAAGATGTCTTTTCTACAAATACTAATGAACGAGAATTACTGCATATATGGGAAGCAATTAAATGTTTCGCCACTTATGACCAACCTCCCACATAAAGAAAGGGTTCAGGTTAATTTTTCACTCGCAATGTAGACCACACTCGATGTTTGAACTGTAATGGCACTGCAAGTTCTTGTTTGGAAACTTTAGTTTAAGAAGGTGCTTTAAAGAGAGAGCAGGAAGCTCAGTTAAGATGGGTTTTAGTGAACGAGAAACTTCCTGAATTAACTGCGCTTGTTTTTATCATAGGAGCTCATTGATCTCATGGATAAAACAAGAGTTAGAATGACATATATCTGGTTTTTTTTCACGTGTTAATGTAACGGCCCAAGATCACTGCTAGCAGATATTGTCCTCTTTGAGCTTTTTTCCACATGTTAATGTAACGGCCCAAGCTCACTTCTAGCAGATATTGTTTTCTTTGAACTTTTTTCCACATGTTAATGTAACGACTCAAGCTCACTGCTAGCAGATATTGTCATTTTTGGATTTTTCCTTCTGAGCTTC ATGACCCGAGGAAAACAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAGAATCAGAAGCCCAAGGGCTCACAACTCGAGGCCAGAGCCGTTGCCCTTAAAGTTATCTGCCCTATTTGCAAGGTACAACTAGCAAATCATAATCAATTGGGCGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCGGGCTGA MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPKEKPPSESG
BLAST of Cp4.1LG01g01290.1 vs. TrEMBL
Match: B9S1M3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 1.3e-27 Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 1
BLAST of Cp4.1LG01g01290.1 vs. TrEMBL
Match: M0S062_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 1.8e-26 Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 1
BLAST of Cp4.1LG01g01290.1 vs. TrEMBL
Match: M0U697_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 4.1e-26 Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1
BLAST of Cp4.1LG01g01290.1 vs. TrEMBL
Match: D7TFG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 5.3e-26 Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1
BLAST of Cp4.1LG01g01290.1 vs. TrEMBL
Match: A0A068VFB0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004475001 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 1.2e-25 Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 1
BLAST of Cp4.1LG01g01290.1 vs. NCBI nr
Match: gi|223540934|gb|EEF42492.1| (conserved hypothetical protein [Ricinus communis]) HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27 Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 1
BLAST of Cp4.1LG01g01290.1 vs. NCBI nr
Match: gi|695077112|ref|XP_009385879.1| (PREDICTED: zinc finger protein 706-like [Musa acuminata subsp. malaccensis]) HSP 1 Score: 124.8 bits (312), Expect = 5.8e-26 Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1
BLAST of Cp4.1LG01g01290.1 vs. NCBI nr
Match: gi|296085504|emb|CBI29236.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 124.4 bits (311), Expect = 7.6e-26 Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1
BLAST of Cp4.1LG01g01290.1 vs. NCBI nr
Match: gi|661876383|emb|CDP19520.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25 Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 1
BLAST of Cp4.1LG01g01290.1 vs. NCBI nr
Match: gi|567880541|ref|XP_006432829.1| (hypothetical protein CICLE_v10003066mg [Citrus clementina]) HSP 1 Score: 122.9 bits (307), Expect = 2.2e-25 Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
|