CmoCh04G006240 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G006240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc finger protein 706
Location	Cmo_Chr04 : 3101164 .. 3103705 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTGTGATCAGAATTTCCCAAATCGGATCGTCCGCTTCTTCTTCTCGAAATTTTGAAGGAAGAAGATGACCCGAGGAAAACAGAAGATCGAAGCTCAGAAGCGAAATGCGGAGAAGAATCAGAAGCCCAAGGGCTCACAATTCGAGGCCAGAGCCGTTGCCCTTAAAGTTATCTGCCCTATTTGCAAGGTTCTCATCTTCTCCAATCTCGTTGCTCTTATACGACTCTATTGGATTCGAGTGTTCATTTGTTCATTTTTTATCTCGATTCTGGTCTTAATTAATGTTATGTGTTGAAGCAACTGGCAATCCCATATCTGGCAACCAAAAGGAAATCATCCTTTTTCTTGCCTGTTCTCTGTTCTTGCTTTAAATACACTTCATATTTCTTGTTCTGTTGTTGGTCTCCATTCACAAGAAATTCGTTGGAATATGATCAATTTGGGGTTTTATTTTCACTTTCTGCCAGTAAGGACGTTGGCTCCCAAGTGGATGGATTGTAAGATCCCACGTCGGTTGGAAAGGAGAACGAAACATTGTCTATAAGGGTGTGGAAACATCTCCCTACTTTGAGAGCTATTGCTCAAAGTGGATAATAGCATACCATTGTAGGGTTTGTGATTCCTAACATGGTATAGAGTCATGCCCATGTCAATATAGAATTCTCAAATGTTGAACAAAGAAGTTGTGAGCCTCAAAGGTATAGTCAAAAGTGACTCAAATGTCGAACAAAGGGTGTACTTTGTTTGAGGACTCCAGAGAAGGAGTCGATCCTCGACTAAGGAGAGGTTGTTCGAGGGCTCCATAGACCTCAGAGGAGACTATATAGTGTACTTTATTCGAGGGGAGGATTTTTGAGGATGGTTGGGAGGGAGTCCCACGTTGGCTAATTTATGGAATGATCATGGGTTTATAAGAAAGGACTTGTATTAGAGCATATTATTTGTCTGAACCACCACGATTTTGTTTACTCGAGAAGGTTCGAGCCTTAAAGCTAGATAATATGAGGCCGGATTCTAAACTTCAAACTGTTCTGGCTATGTTGTAGCCTCGATATTGTCCTGAGAGGCCTTGTGAAAAATGCTGTATAGTCGTGTGTTTGTTGTATCAGATTATGATCGAGTTCATGTTGTTGGGAGAAAAGAACTTGATACTCTATATAAGTCCAAAATCACACCTCTATTGGTAAAACTTCAGAGGACGATTTCTTTTCTCTTCTCATTTGGGTTCCTAATTTGTCTGTTGAGTTCAAATTTTTTCTTTGTGATTGCTTTTCTTGGATGCTACCCAGTTCTCTACAAACTATTATGTTTAGCAAGTAGATTGATCTTGTTCTTGGGAAGAAGTGGAATACCCTGATTTTTCATTCTTCTCCATGTGTGGATTGATCGGGAGAGTTTCTACTTAAGAGCAATCGGCTCCTAGTGAGAACTGACATCCTGGTTGGTGCAAATTGAGATCTTGAAGCTAAGGTTAAGGCCCTTCCTAAAGCAGGAACATAGTTTCTTGTTCAAATCCAAAGTCCTCAGTCTCCTCCCCGAGTTAAGACTCGAGTTAAGACTGTAGTTCCAAATCCAGAATCTTAGACAATTCAACTTAATATAGCATAGCGGATATAATTTGATTCAGCTTAGAAGAAGAAAGGGGCATCTTTCCCTTGACTTTTGGGTTGCGAGTGCATGCGTCCATCACGGTTAGAGCTTTCATAGGTACCTTGTACGTAGTTAAGGTGAAGCTTTGTTTGGTCTTGATTCTAGACTAGGCTGGAAATAACCCCATGACTGACCTAGCTCAAATTTGTTGTTGATTCGGGCAGAATCCATTCATCTTGCTCTTCATACAATTACATACTAGAATCCATGTTTATCATATTTCTCTTCTAGAACTTTGTGAATTTATCTCGTTCTCGGGGTCGAAAATCACGAAACATACAGTCAATGTGGCCGTAAATGTTGAACTAGACATAGGAGGGAGTAAAAGAATGAAAGAAAAAGGTGAAGCTTTGTTTGGTCTTGATTCTAGACTAGGCTGGAAATAACCCATGACTGACCTAGCTCAAATTTGTAGTAATTTTGGTACTTACAAGATGAATTCAATAATCTTGTTCTTACCTCAGGTACAACTAGCAAATCATAACCAATTGGGCGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCGAGCTGAATCGTCGCTTGCACGTTGAAGTATGTGTGTCACTACATATTGAAGGCATTTCAAAGTTCTCTTATGTTCAGATCAATGAAAGTTGCTGGTATTGTCTTCATATTTATTGTTCTTAAAATGTACTAGAAAGAATGATGATTTGTTCTGTCACTTGTAAAATAAACCAAACTCTAGCATGCTTATTCCACATTCCCAGTCTTAAGTTTCTCTGTGCCTTAGAAAATATGGAATCCTTGAAAGAAATGGCCTTGTTTCCAGCATAAAATGATACAAATGAATAGGCTAATCATCACAGAAGAGAATAGAAAGGTGATCATAGTAATAAGATTCTTAATTCAAG

mRNA sequence

TTTTTTGTGATCAGAATTTCCCAAATCGGATCGTCCGCTTCTTCTTCTCGAAATTTTGAAGGAAGAAGATGACCCGAGGAAAACAGAAGATCGAAGCTCAGAAGCGAAATGCGGAGAAGAATCAGAAGCCCAAGGGCTCACAATTCGAGGCCAGAGCCGTTGCCCTTAAAGTTATCTGCCCTATTTGCAAGGTACAACTAGCAAATCATAACCAATTGGGCGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCGAGCTGAATCGTCGCTTGCACGTTGAAGTATGTGTGTCACTACATATTGAAGGCATTTCAAAGTTCTCTTATGTTCAGATCAATGAAAGTTGCTGGTATTGTCTTCATATTTATTGTTCTTAAAATGTACTAGAAAGAATGATGATTTGTTCTGTCACTTGTAAAATAAACCAAACTCTAGCATGCTTATTCCACATTCCCAGTCTTAAGTTTCTCTGTGCCTTAGAAAATATGGAATCCTTGAAAGAAATGGCCTTGTTTCCAGCATAAAATGATACAAATGAATAGGCTAATCATCACAGAAGAGAATAGAAAGGTGATCATAGTAATAAGATTCTTAATTCAAG

Coding sequence (CDS)

ATGACCCGAGGAAAACAGAAGATCGAAGCTCAGAAGCGAAATGCGGAGAAGAATCAGAAGCCCAAGGGCTCACAATTCGAGGCCAGAGCCGTTGCCCTTAAAGTTATCTGCCCTATTTGCAAGGTACAACTAGCAAATCATAACCAATTGGGCGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCGAGCTGA

Homology

[Close]

BLAST of CmoCh04G006240 vs. TrEMBL
Match: B9S1M3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-27
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALKVICPICK QLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSESS 69
          EKPPSESS
Sbjct: 61 EKPPSESS 68

[Close]

BLAST of CmoCh04G006240 vs. TrEMBL
Match: D7TFG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-26
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQFEARAVALK+ CPICKVQLAN NQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSES 68
          EKPPS+S
Sbjct: 61 EKPPSDS 67

[Close]

BLAST of CmoCh04G006240 vs. TrEMBL
Match: M0U697_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.0e-26
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAV LKVICPICKVQLANHNQL DHY SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of CmoCh04G006240 vs. TrEMBL
Match: V4V2J0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003066mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.0e-26
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAE+NQKPKGSQ EARAVALKV CPICK QLAN NQ+GDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKGSQIEARAVALKVSCPICKAQLANQNQIGDHYASKHPK 60

Query: 61 EKPPSESS 69
          EKPP+ESS
Sbjct: 61 EKPPTESS 68

[Close]

BLAST of CmoCh04G006240 vs. TrEMBL
Match: V7CL75_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G125300g PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-25
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQK KGSQ EARAV LKVICPICKVQLAN NQL DHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKSKGSQLEARAVGLKVICPICKVQLANQNQLADHYASKHPK 60

Query: 61 EKPPSESS 69
          EKPP+ESS
Sbjct: 61 EKPPAESS 68

[Close]

BLAST of CmoCh04G006240 vs. NCBI nr
Match: gi|223540934|gb|EEF42492.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALKVICPICK QLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSESS 69
          EKPPSESS
Sbjct: 61 EKPPSESS 68

[Close]

BLAST of CmoCh04G006240 vs. NCBI nr
Match: gi|296085504|emb|CBI29236.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 124.8 bits (312), Expect = 5.8e-26
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQFEARAVALK+ CPICKVQLAN NQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSES 68
          EKPPS+S
Sbjct: 61 EKPPSDS 67

[Close]

BLAST of CmoCh04G006240 vs. NCBI nr
Match: gi|567880541|ref|XP_006432829.1| (hypothetical protein CICLE_v10003066mg [Citrus clementina])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAE+NQKPKGSQ EARAVALKV CPICK QLAN NQ+GDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKGSQIEARAVALKVSCPICKAQLANQNQIGDHYASKHPK 60

Query: 61 EKPPSESS 69
          EKPP+ESS
Sbjct: 61 EKPPTESS 68

[Close]

BLAST of CmoCh04G006240 vs. NCBI nr
Match: gi|695077112|ref|XP_009385879.1| (PREDICTED: zinc finger protein 706-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAV LKVICPICKVQLANHNQL DHY SKHPK
Sbjct: 25 MTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHPK 84

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 85 EKPPSES 91

[Close]

BLAST of CmoCh04G006240 vs. NCBI nr
Match: gi|593790150|ref|XP_007158114.1| (hypothetical protein PHAVU_002G125300g [Phaseolus vulgaris])

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-25
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 1


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQK KGSQ EARAV LKVICPICKVQLAN NQL DHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKSKGSQLEARAVGLKVICPICKVQLANQNQLADHYASKHPK 60

Query: 61 EKPPSESS 69
          EKPP+ESS
Sbjct: 61 EKPPAESS 68

The following BLAST results are available for this feature:

BLAST of CmoCh04G006240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G006240 vs. TrEMBL


Match Name	E-value	Identity	Description
B9S1M3_RICCO	1.3e-27	94.12	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1	[more]
D7TFG3_VITVI	4.1e-26	89.55	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=...	[more]
M0U697_MUSAM	9.0e-26	91.04	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
V4V2J0_9ROSI	9.0e-26	89.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003066mg PE=4 SV=1	[more]
V7CL75_PHAVU	2.0e-25	91.18	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G125300g PE=4 SV=1	[more]

BLAST of CmoCh04G006240 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G006240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|223540934\|gb\|EEF42492.1\|	1.8e-27	94.12	conserved hypothetical protein [Ricinus communis]	[more]
gi\|296085504\|emb\|CBI29236.3\|	5.8e-26	89.55	unnamed protein product [Vitis vinifera]	[more]
gi\|567880541\|ref\|XP_006432829.1\|	1.3e-25	89.71	hypothetical protein CICLE_v10003066mg [Citrus clementina]	[more]
gi\|695077112\|ref\|XP_009385879.1\|	1.3e-25	91.04	PREDICTED: zinc finger protein 706-like [Musa acuminata subsp. malaccensis]	[more]
gi\|593790150\|ref\|XP_007158114.1\|	2.9e-25	91.18	hypothetical protein PHAVU_002G125300g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2
IPR007513	Uncharacterised_SERF
IPR026939	At2g23090-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G006240.1	CmoCh04G006240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 37..58 scor
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 1..25 score: 6.
IPR026939	At2g23090-like	GENE3D	G3DSA:4.10.1050.10		coord: 1..65 score: 5.4
IPR026939	At2g23090-like	PANTHER	PTHR21213	FAMILY NOT NAMED	coord: 1..66 score: 4.1
IPR026939	At2g23090-like	unknown	SSF118359	Expressed protein At2g23090/F21P24.15	coord: 1..64 score: 1.02
None	No IPR available	PFAM	PF12874	zf-met	coord: 37..57 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G006240	CmaCh04G005850	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G006240	Cla012836	Watermelon (97103) v1	cmowmB676
CmoCh04G006240	MELO3C016253	Melon (DHL92) v3.5.1	cmomeB697
CmoCh04G006240	ClCG07G011300	Watermelon (Charleston Gray)	cmowcgB677
CmoCh04G006240	CSPI04G06690	Wild cucumber (PI 183967)	cmocpiB707
CmoCh04G006240	Lsi07G007540	Bottle gourd (USVL1VR-Ls)	cmolsiB689
CmoCh04G006240	Cp4.1LG01g01290	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G006240	MELO3C016253.2	Melon (DHL92) v3.6.1	cmomedB791
CmoCh04G006240	Cla97C07G138070	Watermelon (97103) v2	cmowmbB756
CmoCh04G006240	Bhi01G002325	Wax gourd	cmowgoB0854
CmoCh04G006240	CsGy4G006630	Cucumber (Gy14) v2	cgybcmoB515
CmoCh04G006240	Carg13157	Silver-seed gourd	carcmoB0058
CmoCh04G006240	Carg11435	Silver-seed gourd	carcmoB0902

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G006240	CmoCh16G005710	Cucurbita moschata (Rifu)	cmocmoB288

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G006240	Wax gourd	cmowgoB0844
CmoCh04G006240	Cucumber (Gy14) v1	cgycmoB0276
CmoCh04G006240	Cucurbita maxima (Rimu)	cmacmoB340
CmoCh04G006240	Cucumber (Chinese Long) v2	cmocuB699
CmoCh04G006240	Cucurbita pepo (Zucchini)	cmocpeB670
CmoCh04G006240	Cucumber (Chinese Long) v3	cmocucB0827