CmoCh16G005710 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G005710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc finger protein 706
Location	Cmo_Chr16 : 2765195 .. 2767499 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAAGCTGATGATTTTTGGTGCAGAATTTTCCGATCCTCTGCTTCTCAAAATCTTGAACGAAGAAGATGACCCGAGGAAAACAAAAGATCGAAGCTCAGAGGCGAAATGCGGAGAAGAATCAGAAGCAGAAAGGCTCGCAGTTCGAGGCTAGAGCCGTTGCGCTTAAAGTCATCTGCCCTATTTGCAAGGTTCTTCATCTCTTCAATCTTTGTTTCTATTATCTTCTCGATTGGATTTGAGTGTTTGTTTTTTCTTTTTGATCTGGATCATAATCTTATTAATTTTATGATGTCAAAGCAATAGAAAATTTCATTTCCAGTTATCATTTTTCCGTATTGTTTTCTAATCTAGGTTATAATGCACTTGATATTGCTGTTGCGATGCTCTCAATTGATAAGAAATTCATTGGAGTTTGATTGATTTTGGTTTTCTCTTTCATTTTAAGTCAATGGTAGAATCCAAAAGTAGATCATTTTGGCGGATCATCTGTTATAGGGTTTGGCAGGACTGGTACCAGAACTATGAGTTTATTGACTGGAAAATGTTCAAGCCTTAATTCTAGATGATAAAGAGGTTTTGAGTTCAGGCTACAAAATATAGGAGCCATCTACTTGAAATATTGAATAGAAACTATGATTCAAGATTTTTTATGTGTAGCTCTGATACTGTCTTAAGAAGTTCTCTTGTTACGAGAAATGCTGCCAGATTAGTTAAATTGTGATTGAGTTCATGATTATTGGGAAAACAAAGAATTTGATACTCCATATCCAAATTCACAGCTCTATTTGTAGAACATCTGAGGATAATTCTCTTTTTGTTTACTCCTTTGGATTCCTAATTTGTATGTTGTGTTTTTCTTTCTTTGGGATAGATGATAACAACCTAAGAGCCTAAACAAGGAGAGCCTTCCAATTGTTAATAGTCATTAGAAGACTAACAAAGTTTTATCTTATCTTCAAAGATCATTGCCTTTAAAACACCAGCCCCTTGGAGCTTCTATCTGCCAATTATCACCACTTTTAGGCACACAAAGGGATAACTCATTTAAGATGTACATCCAACCTCAATAGCAAAGTGGCAATAGGGGAAACAAATGATTCACATATTCACCATCTCTAAGACATAAAAAGCAAGCAACGCAGGATAAGACTCGATTTGCATATATATAGTTAGCAACCTGTCTTGGGTATTAAAACTTTCGTTTCTTCAGGTACTTGTCGTGCCAAACTTACCATCATTTGGGTGTTAAGTCTGTTGAGTTCAAATGCTTACTTTGTAATGTCCAATTTTCTACAAATTTTATGTTTAGGCTGTGGATTGATCTTTTGCCTTTGAAGAAGTGGAATGCCTAGTTTTTCATTCCTCCCCATGTGTTGTCTAATGTGTGTATACCATTCTCTTCGTACACATACTTTTAACAGCCCAAGCCCACCCAAGCCGCTAGCAGATATTATCATCTTTGGGCTTTCCTTTTTGGACCTTCCACTCAAAGCTTTAAAATGTGTCTATTAGGAAAAGGTTTCCACACTCTTATAAGGAATGTTTCATTCTTCTCTCCAACCAATGTGAGATCTCACATTACTACTAGAATCCATGTCTATCAAACTTTTCTCGTGGGATTTTGTGAATACTTTCCCTTGGCACGTGGGACGAAGTCATAGAGACTCTAAATATTGAATTAGACATAGAAGAGAGTTATAAATTCATCTATTTTGAAGTTTCCCATTATGATGCTCAGAAGGTTTTTTCGACTATGTATCTAATCATCTGTTTCTTACCATAGGTGCAACTAGCAAATCATAACCAATTGGGTGATCACTATGCCTCCAAACATCCAAAGGAAAAGCCACCGTCAGAATCTGGCTGAATCGCCCCTTGCAAGTTGAAGTATGTGAGTAGCTTTATTGAAGGCATTTCAAAGTTCCCTTCTGTGCAGATCAATGAAAGTTGCTCTGATTGATTGTCTTCATCTTTCTTGTTCTTAAAATTGTACTCCTCCTTGTAAGGGTATAAAATGACGAGTCATTGTGGCACTTGTAAAATAAACAAGACTTTAATACTCTTGTTCCAGAGTCGTCCCAGTCTAGTTTACTCTGTGCCTATGAACTATGGAATCCTAAGAAATGACCTTTTCTTTATAAAAGGATACAATCTTGGAAATGCGTAAGAAGCTTCTTCCGCTATTAGATATTGTTTACTTTGGTCCATTATGTATTGTCGTCAACTTCTCTGTTTTAAAACGCATTTGCTAGGGAGAGGTTTACACACCCTCATAAGAAATACTTTGTTCCTCTATACAAGA

mRNA sequence

AATAAAGCTGATGATTTTTGGTGCAGAATTTTCCGATCCTCTGCTTCTCAAAATCTTGAACGAAGAAGATGACCCGAGGAAAACAAAAGATCGAAGCTCAGAGGCGAAATGCGGAGAAGAATCAGAAGCAGAAAGGCTCGCAGTTCGAGGCTAGAGCCGTTGCGCTTAAAGTCATCTGCCCTATTTGCAAGGTGCAACTAGCAAATCATAACCAATTGGGTGATCACTATGCCTCCAAACATCCAAAGGAAAAGCCACCGTCAGAATCTGGCTGAATCGCCCCTTGCAAGTTGAAGTATGTGAGTAGCTTTATTGAAGGCATTTCAAAGTTCCCTTCTGTGCAGATCAATGAAAGTTGCTCTGATTGATTGTCTTCATCTTTCTTGTTCTTAAAATTGTACTCCTCCTTGTAAGGGTATAAAATGACGAGTCATTGTGGCACTTGTAAAATAAACAAGACTTTAATACTCTTGTTCCAGAGTCGTCCCAGTCTAGTTTACTCTGTGCCTATGAACTATGGAATCCTAAGAAATGACCTTTTCTTTATAAAAGGATACAATCTTGGAAATGCGTAAGAAGCTTCTTCCGCTATTAGATATTGTTTACTTTGGTCCATTATGTATTGTCGTCAACTTCTCTGTTTTAAAACGCATTTGCTAGGGAGAGGTTTACACACCCTCATAAGAAATACTTTGTTCCTCTATACAAGA

Coding sequence (CDS)

ATGACCCGAGGAAAACAAAAGATCGAAGCTCAGAGGCGAAATGCGGAGAAGAATCAGAAGCAGAAAGGCTCGCAGTTCGAGGCTAGAGCCGTTGCGCTTAAAGTCATCTGCCCTATTTGCAAGGTGCAACTAGCAAATCATAACCAATTGGGTGATCACTATGCCTCCAAACATCCAAAGGAAAAGCCACCGTCAGAATCTGGCTGA

Homology

[Close]

BLAST of CmoCh16G005710 vs. TrEMBL
Match: B9S1M3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQRRNAE+NQK KGSQ EARAVALKVICPICK QLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of CmoCh16G005710 vs. TrEMBL
Match: D7TFG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.3e-26
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQRRNAE+NQK KGSQFEARAVALK+ CPICKVQLAN NQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of CmoCh16G005710 vs. TrEMBL
Match: A0A103XIU1_CYNCS (Zinc finger, C2H2 OS=Cynara cardunculus var. scolymus GN=Ccrd_006439 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-25
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQR+NAEKNQK KGSQFEARAVALKVICPICK QLAN NQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRKNAEKNQKSKGSQFEARAVALKVICPICKAQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSES 68
          EKPPS S
Sbjct: 61 EKPPSNS 67

[Close]

BLAST of CmoCh16G005710 vs. TrEMBL
Match: M0S062_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.6e-25
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 1


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQRRNAE+NQK KGSQ EARAV LK+ CPICKVQLANHNQL DHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKISCPICKVQLANHNQLMDHYASKHPK 60

Query: 61 EKPPSESG 69
          EKPPSESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of CmoCh16G005710 vs. TrEMBL
Match: M5WB57_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013644mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-25
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1   MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
           MTRGKQKIEAQ+RNAEKNQKQKGSQFEARAVALK+ CPICKVQLAN  QLGDHYASKHP+
Sbjct: 44  MTRGKQKIEAQKRNAEKNQKQKGSQFEARAVALKITCPICKVQLANPKQLGDHYASKHPR 103

Query: 61  EKPPSES 68
           EKPP+ES
Sbjct: 104 EKPPAES 110

[Close]

BLAST of CmoCh16G005710 vs. NCBI nr
Match: gi|223540934|gb|EEF42492.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-26
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQRRNAE+NQK KGSQ EARAVALKVICPICK QLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of CmoCh16G005710 vs. NCBI nr
Match: gi|296085504|emb|CBI29236.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 124.4 bits (311), Expect = 7.6e-26
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQRRNAE+NQK KGSQFEARAVALK+ CPICKVQLAN NQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of CmoCh16G005710 vs. NCBI nr
Match: gi|976903775|gb|KVH91543.1| (Zinc finger, C2H2 [Cynara cardunculus var. scolymus])

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-25
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQR+NAEKNQK KGSQFEARAVALKVICPICK QLAN NQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRKNAEKNQKSKGSQFEARAVALKVICPICKAQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSES 68
          EKPPS S
Sbjct: 61 EKPPSNS 67

[Close]

BLAST of CmoCh16G005710 vs. NCBI nr
Match: gi|595849731|ref|XP_007209783.1| (hypothetical protein PRUPE_ppa013644mg [Prunus persica])

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-25
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1   MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
           MTRGKQKIEAQ+RNAEKNQKQKGSQFEARAVALK+ CPICKVQLAN  QLGDHYASKHP+
Sbjct: 44  MTRGKQKIEAQKRNAEKNQKQKGSQFEARAVALKITCPICKVQLANPKQLGDHYASKHPR 103

Query: 61  EKPPSES 68
           EKPP+ES
Sbjct: 104 EKPPAES 110

[Close]

BLAST of CmoCh16G005710 vs. NCBI nr
Match: gi|695077112|ref|XP_009385879.1| (PREDICTED: zinc finger protein 706-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 121.3 bits (303), Expect = 6.4e-25
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQRRNAE+NQK KGSQ EARAV LKVICPICKVQLANHNQL DHY SKHPK
Sbjct: 25 MTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHPK 84

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 85 EKPPSES 91

The following BLAST results are available for this feature:

BLAST of CmoCh16G005710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G005710 vs. TrEMBL


Match Name	E-value	Identity	Description
B9S1M3_RICCO	1.4e-26	94.03	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866530 PE=4 SV=1	[more]
D7TFG3_VITVI	5.3e-26	89.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00160 PE=4 SV=...	[more]
A0A103XIU1_CYNCS	1.5e-25	91.04	Zinc finger, C2H2 OS=Cynara cardunculus var. scolymus GN=Ccrd_006439 PE=4 SV=1	[more]
M0S062_MUSAM	2.6e-25	89.71	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
M5WB57_PRUPE	3.4e-25	89.55	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013644mg PE=4 SV=1	[more]

BLAST of CmoCh16G005710 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh16G005710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|223540934\|gb\|EEF42492.1\|	2.0e-26	94.03	conserved hypothetical protein [Ricinus communis]	[more]
gi\|296085504\|emb\|CBI29236.3\|	7.6e-26	89.71	unnamed protein product [Vitis vinifera]	[more]
gi\|976903775\|gb\|KVH91543.1\|	2.2e-25	91.04	Zinc finger, C2H2 [Cynara cardunculus var. scolymus]	[more]
gi\|595849731\|ref\|XP_007209783.1\|	4.9e-25	89.55	hypothetical protein PRUPE_ppa013644mg [Prunus persica]	[more]
gi\|695077112\|ref\|XP_009385879.1\|	6.4e-25	91.04	PREDICTED: zinc finger protein 706-like [Musa acuminata subsp. malaccensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2
IPR007513	Uncharacterised_SERF
IPR026939	At2g23090-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G005710.1	CmoCh16G005710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 37..58 scor
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 1..25 score: 9.
IPR026939	At2g23090-like	GENE3D	G3DSA:4.10.1050.10		coord: 1..65 score: 5.5
IPR026939	At2g23090-like	PANTHER	PTHR21213	FAMILY NOT NAMED	coord: 1..66 score: 5.4
IPR026939	At2g23090-like	unknown	SSF118359	Expressed protein At2g23090/F21P24.15	coord: 1..64 score: 2.35
None	No IPR available	unknown	Coil	Coil	coord: 5..25 scor
None	No IPR available	PFAM	PF12874	zf-met	coord: 37..57 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G005710	CmaCh16G005230	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G005710	CmaCh04G005850	Cucurbita maxima (Rimu)	cmacmoB703
CmoCh16G005710	Cla012836	Watermelon (97103) v1	cmowmB308
CmoCh16G005710	MELO3C016253	Melon (DHL92) v3.5.1	cmomeB294
CmoCh16G005710	ClCG07G011300	Watermelon (Charleston Gray)	cmowcgB293
CmoCh16G005710	CSPI04G06690	Wild cucumber (PI 183967)	cmocpiB332
CmoCh16G005710	Lsi07G007540	Bottle gourd (USVL1VR-Ls)	cmolsiB314
CmoCh16G005710	Cp4.1LG14g02760	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G005710	Cp4.1LG01g01290	Cucurbita pepo (Zucchini)	cmocpeB315
CmoCh16G005710	MELO3C016253.2	Melon (DHL92) v3.6.1	cmomedB336
CmoCh16G005710	Cla97C07G138070	Watermelon (97103) v2	cmowmbB335
CmoCh16G005710	Bhi01G002325	Wax gourd	cmowgoB0431
CmoCh16G005710	CsGy4G006630	Cucumber (Gy14) v2	cgybcmoB467
CmoCh16G005710	Carg13157	Silver-seed gourd	carcmoB0054
CmoCh16G005710	Carg11435	Silver-seed gourd	carcmoB0898

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G005710	CmoCh04G006240	Cucurbita moschata (Rifu)	cmocmoB288

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G005710	Cucumber (Chinese Long) v2	cmocuB325
CmoCh16G005710	Cucumber (Chinese Long) v3	cmocucB0388
CmoCh16G005710	Wax gourd	cmowgoB0433
CmoCh16G005710	Cucumber (Gy14) v1	cgycmoB0274