MELO3C012350 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012350
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Iron-sulfur cluster insertion protein ErpA
Location	chr10 : 1096271 .. 1099169 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAAATTACGACGAATTGTAATTCAAGCAAATGCGTATATCGGAAAACACTCGAAAGTTGTAGTTTGCGGAGGAGAAAATTGATCGATAGGCAAAAAGAAGTGAGAAAATGGCAGCTTCTTCGTCTTCCTTTTTCGCCGCCGCTTCTCAGAAGGCCGGACCAGCCGTTCGCCGCCAAATTCTTACTCTCACGGAGGCAGCCGCCGCTAGAATTCGACAACTTCTTCAACAGCGCCAACGTCCATTCCTTCGTCTTGGCGTCAAGGCGCGCGGTTGTAATGGTTTATCCTATACTCTCAACTACGCAGGTCTGTAATAGCCTAATGAATTTCAACTTTTTATTGATTCTACGTAATTTCTCTTTTACCCATGTGATTGAATTTGTCGATTTTCTATCTCTTTTCTTTGAATCAGATTTTGATTTTGGATTTTATTGGAGATAAATAGGTATTTGGTGTATGTGAGCGATACAACCTAATAGTTTAGAGGAGATGTTTCGGAACTAGTCTTTTGGAAGATTTTTTTAAAAAATATTTGTACTGTTTCCAGCTCCAATTACCAAAATTAGGATTTTAAGACCGATGATCTATTATGATGATTAGCCGTAAAAAATTAAGAAGGTCAAATGATTCTGTAATTATTATAACCGGAATTGGGCATAGGTTGGTATGTAAGTTGTTCGGAGATGAGCTGCTGAGTTCTTACTAGCCGTAACAACGGCAAATCTGAACCATAAAACTTGACGTTCCTGAATGCATAAGTTGATAAAAAATCGATGATTTTACATACAGGGCCAGGGACCTATGTATGAGAGGAGAATTGACTTAACTACTTCAGTCTGTAAATTATTCTGTATCTTATAGAATCAGTTATGAATTAATGGTGCTATGGGACAGAGAGTTTGGATTCGATGATTTCCTTATCCAACCTATGGCACAGGGATTATTGTGTTATTGATATATCAGAATGTCAAACTAAATGCACGGTTCACCAAAATTTATGGTGAACATTTGCTTCCATCAAGTATCATTTAGATTGTGGTGTATGTTGGCTATTATGAGAACATAGCAGGATTGGGTATCGATTAAATTGACTTGAGAATCTTTGTCTCTCCCTCCTGCTATGGTTAATTATAATGTTATTAGACCAAAGTGCTATTTCTGTTCATTTAGAAGATAAATGGGTTGGCAATCCTCCATGGGTCAGCTGGAAGAGAATAGTTATTAACATGTTTGATGGTTGAAATTTGAGATTTTATACTCTTTGTGGCTTGGGATTTTTTATTGGTTGTGCTTATTTAATATGACTATCTTCTCTGTTAACAGTATTTATAATTTAGTTTTTTATGGAGTTGCTCATTATTGGAGAGTTATCTAACTTGGTATTACCTCAGTTTTTTTTCTCACATTATCGTTAACATTTTCTTTATGCAAGAAATAGGATTCATCCTTTATCTATGTTTGGCATAAATTGACTATAGTTACGATCTCTATCCTTTGAAATACTTTAAGATTGCAGTATTTCATTTAACAGTTTCCTTTTTCAAATATTTCAGATGAGAAAGGGAAGTTTGATGAGCTGGTTGAGGATCAAAATGTGAAAATACTGATCGATCCAAAGGCTCTAATGCACGTAATAGGAACAAAAATGGACTTTGTCGATGACAAATTAAGGTATTTGATAAATCTCTTTCCTAGAATTTTATTTATTCAGCTCTATATATCCATCCTTAAGTTGATGAACTATCCTGCTTGTTAATGACAACATCAGGCTGAAATGTAAAAGTTTGTGTACTTCTTATATTGAAACGTCCACAAGAGTTAGTGATGTAATTGCTCTAGTTAGGATTTATTGTGGGTTTGTATTAAGTCTATCATAGATACAAATTTCAAGGTTAGTTCTCAAGGTTAATTAATTCTTTTAATTATAATTAACTGGCTACCGGTTTTATCTTTCACGTGTAATCATTTTAGATCGTTGGAGTTGAGCTTATATATAAAGCTCCTCCATCTTCTTCAGTTTGGAGGTAATAATATCACAGGGGTTATTTCTTCAAGAAAATTCTCCAAGGTTTTGGATTAAATCACTTTGCTTTAGAGTGGATTTAGATCATCTTCAACACATCCACAAGCTGGTGAAAATAATTAATACAGCTTAAGAGAGAACTGTTAAGTTTATTTATTAGATTCAATTCATCTTAGTATAGCTATGTGGATAAGACACTCGGTACTAACTTAAAAGGATGATGGTTTGATCCTCTACCTTGCAATGGATGGACTTAAAAAAATTGTTCATTAGATTATGGTTATTTTGAGTCTCTATGTCAAATCAAATTCAAATTCAATTTTTTAACCTCTTGAACCACTATATTCAGTGGCCATTGAAACTTATCTTTTTTCTCTCTTTTCTCTTGTTGGTAGATCTGAGTTTATCTTTATCAATCCAAATTCCAAAGGTCAATGTGGCTGTGGGGAGTCCTTTATGACAACAAGTAGTGCAGAAGCCAACAAAAAATGAGGCAGTTCGAGCAATGAGCGTTGTTTTTAAGAACTCAAAACTCACAGTTGCTGATTTGTTGTGTATTTTGCTGGAATTACAAGCACAATGATCAAGAGAGTTCTCTGACAACAACTTTAAACATTTGTAAGAATATTTCTATATTGGCTGATTATATTCTTAGAAAGCCAGTTAAGAGTTGTACTCTGCTAATTTTTTTTTCTTTAAAAATATTTTGTATGTATATTACTGTAGATTAAACTGGCTAATGAGTTATATATGAGAGCCTATAAGGTAATAAAATTCGCCCACGACTTTCTTTTTGTTAAAGTCATAGAACTTGGTAACTCGAGCATCTTGCTTGCCTTATCACTGGTTGAGTAATGAGAATGGTTTGTGTCC

mRNA sequence

AACAAAATTACGACGAATTGTAATTCAAGCAAATGCGTATATCGGAAAACACTCGAAAGTTGTAGTTTGCGGAGGAGAAAATTGATCGATAGGCAAAAAGAAGTGAGAAAATGGCAGCTTCTTCGTCTTCCTTTTTCGCCGCCGCTTCTCAGAAGGCCGGACCAGCCGTTCGCCGCCAAATTCTTACTCTCACGGAGGCAGCCGCCGCTAGAATTCGACAACTTCTTCAACAGCGCCAACGTCCATTCCTTCGTCTTGGCGTCAAGGCGCGCGGTTGTAATGGTTTATCCTATACTCTCAACTACGCAGATGAGAAAGGGAAGTTTGATGAGCTGGTTGAGGATCAAAATGTGAAAATACTGATCGATCCAAAGGCTCTAATGCACGTAATAGGAACAAAAATGGACTTTGTCGATGACAAATTAAGATCTGAGTTTATCTTTATCAATCCAAATTCCAAAGGTCAATGTGGCTGTGGGGAGTCCTTTATGACAACAAGTAGTGCAGAAGCCAACAAAAAATGAGGCAGTTCGAGCAATGAGCGTTGTTTTTAAGAACTCAAAACTCACAGTTGCTGATTTGTTGTGTATTTTGCTGGAATTACAAGCACAATGATCAAGAGAGTTCTCTGACAACAACTTTAAACATTTGTAAGAATATTTCTATATTGGCTGATTATATTCTTAGAAAGCCAGTTAAGAGTTGTACTCTGCTAATTTTTTTTTCTTTAAAAATATTTTGTATGTATATTACTGTAGATTAAACTGGCTAATGAGTTATATATGAGAGCCTATAAGGTAATAAAATTCGCCCACGACTTTCTTTTTGTTAAAGTCATAGAACTTGGTAACTCGAGCATCTTGCTTGCCTTATCACTGGTTGAGTAATGAGAATGGTTTGTGTCC

Coding sequence (CDS)

ATGGCAGCTTCTTCGTCTTCCTTTTTCGCCGCCGCTTCTCAGAAGGCCGGACCAGCCGTTCGCCGCCAAATTCTTACTCTCACGGAGGCAGCCGCCGCTAGAATTCGACAACTTCTTCAACAGCGCCAACGTCCATTCCTTCGTCTTGGCGTCAAGGCGCGCGGTTGTAATGGTTTATCCTATACTCTCAACTACGCAGATGAGAAAGGGAAGTTTGATGAGCTGGTTGAGGATCAAAATGTGAAAATACTGATCGATCCAAAGGCTCTAATGCACGTAATAGGAACAAAAATGGACTTTGTCGATGACAAATTAAGATCTGAGTTTATCTTTATCAATCCAAATTCCAAAGGTCAATGTGGCTGTGGGGAGTCCTTTATGACAACAAGTAGTGCAGAAGCCAACAAAAAATGA

Protein sequence

MAASSSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLNYADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTSSAEANKK*

Homology

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BLAST of MELO3C012350 vs. Swiss-Prot
Match: ISAM1_ARATH (Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 6.6e-41
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 1


Query: 5   SSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLN 64
           +S   AAA+ + GPA+R+Q+LTLT+ AA+R+  LLQQRQ+PFLRLGVKARGCNGLSYTLN
Sbjct: 3   ASQILAAAAARVGPALRKQVLTLTDEAASRVHHLLQQRQKPFLRLGVKARGCNGLSYTLN 62

Query: 65  YADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           YADEKGKFDELVE++ V+IL++PKALMHVIGTKMDFVDDKLRS +++
Sbjct: 63  YADEKGKFDELVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVF 109

[Close]

BLAST of MELO3C012350 vs. Swiss-Prot
Match: ISAM3_ARATH (Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana GN=At2g36260 PE=3 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-33
Identity = 66/92 (71.74%), Postives = 82/92 (89.13%), Query Frame = 1


Query: 20  VRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLNYADEKGKFDELVEDQ 79
           +R+Q+L L++ AAARIRQLLQ +Q+PFLRL V+A+GCNGLSY LNYA EKGKFDE+VE++
Sbjct: 1   MRKQVLALSDTAAARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEK 60

Query: 80  NVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
            VKIL+DPKA+MHVIGT+MDFVDDKLRS +++
Sbjct: 61  GVKILVDPKAVMHVIGTEMDFVDDKLRSEFVF 92

[Close]

BLAST of MELO3C012350 vs. Swiss-Prot
Match: Y484_RICPR (Uncharacterized protein RP484 OS=Rickettsia prowazekii (strain Madrid E) GN=RP484 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.8e-18
Identity = 38/90 (42.22%), Postives = 68/90 (75.56%), Query Frame = 1


Query: 22  RQILTLTEAAAARIRQLLQQRQRPF--LRLGVKARGCNGLSYTLNYADEKGKFDELVEDQ 81
           + +++LT+AAA +++ L+++R +P   +R+G+K+ GC G +Y + YAD K +FDE+VE++
Sbjct: 2   KNVISLTDAAAKQVKLLIEKRAKPTFGIRVGIKSGGCAGQTYYVEYADNKNQFDEVVEEK 61

Query: 82  NVKILIDPKALMHVIGTKMDFVDDKLRSMW 110
            V+ILIDPK LM+++G++MD+V+   +S +
Sbjct: 62  GVRILIDPKTLMYILGSEMDYVETNFKSQF 91

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BLAST of MELO3C012350 vs. Swiss-Prot
Match: ISA1_YEAST (Iron-sulfur assembly protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISA1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-17
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 21  RRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLNYADEKGKFDELVEDQN 80
           R+ ++TL+  A   +R LL Q +   +R+  + RGC+GL+Y L Y  E GKFDE+VE   
Sbjct: 143 RKALITLSPKAIKHLRALLAQPEPKLIRVSARNRGCSGLTYDLQYITEPGKFDEVVEQDG 202

Query: 81  VKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           VKI+ID KAL  +IG++MD++DDKL S +++
Sbjct: 203 VKIVIDSKALFSIIGSEMDWIDDKLASKFVF 233

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BLAST of MELO3C012350 vs. Swiss-Prot
Match: ISCA1_DROME (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Drosophila melanogaster GN=l(1)G0136 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-17
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 22  RQILTLTEAAAARIRQLLQQRQRPF-LRLGVKARGCNGLSYTLNYADEKGKFDELVEDQN 81
           R  LTLT AA  RI+ LLQ +     L++GV+ RGCNGLSYTL+YA +K K DE V    
Sbjct: 23  RAALTLTPAAVLRIKTLLQDKPDMVGLKVGVRQRGCNGLSYTLDYASQKDKLDEEVVQDG 82

Query: 82  VKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           VK+ ID KA + ++GT+MDFV+ KL S +++
Sbjct: 83  VKVFIDKKAQLSLLGTEMDFVESKLSSEFVF 113

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BLAST of MELO3C012350 vs. TrEMBL
Match: A0A0A0KTF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G614650 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.4e-50
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 1


Query: 1   MAASSSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60
           MAASSSSFFAAASQKAGPA RRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS
Sbjct: 1   MAASSSSFFAAASQKAGPAARRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60

Query: 61  YTLNYADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           YTLNYADEKGKFDELVEDQNVKILI+PKALMHVIGTKMDFVDDKLRS +++
Sbjct: 61  YTLNYADEKGKFDELVEDQNVKILIEPKALMHVIGTKMDFVDDKLRSEFIF 111

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BLAST of MELO3C012350 vs. TrEMBL
Match: F6HKK6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03400 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.2e-42
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 1


Query: 5   SSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLN 64
           +SSF AAA+ KAGP++RRQ LTLT+AAA+RIR LLQQRQR FLRLGVKARGCNGLSYTLN
Sbjct: 29  ASSFLAAAAAKAGPSLRRQALTLTDAAASRIRHLLQQRQRTFLRLGVKARGCNGLSYTLN 88

Query: 65  YADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           YAD+KGKFDELVED+ VKILIDPKALMHVIGTKMDFVDDKLRS +++
Sbjct: 89  YADDKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIF 135

[Close]

BLAST of MELO3C012350 vs. TrEMBL
Match: B8R1J7_EUCGR (Iron-sulfer cluster scaffold protein ISA1 (Fragment) OS=Eucalyptus grandis GN=ISA1 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.6e-41
Identity = 86/111 (77.48%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 1   MAASSSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60
           MAA S+S  AAA+ + G A RRQ+LT+T+AAA+RIR LLQQRQRPFLRLGVKARGCNGLS
Sbjct: 28  MAAPSASKLAAAADRFGSAARRQVLTVTDAAASRIRHLLQQRQRPFLRLGVKARGCNGLS 87

Query: 61  YTLNYADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           YTLNYAD KGKFDELVED+ +KIL++PKALMHVIGTKMDFVDDKLRS +++
Sbjct: 88  YTLNYADSKGKFDELVEDKGIKILVEPKALMHVIGTKMDFVDDKLRSEFIF 138

[Close]

BLAST of MELO3C012350 vs. TrEMBL
Match: A0A059AA55_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00259 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.6e-41
Identity = 86/111 (77.48%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 1   MAASSSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60
           MAA S+S  AAA+ + G A RRQ+LT+T+AAA+RIR LLQQRQRPFLRLGVKARGCNGLS
Sbjct: 1   MAAPSASKLAAAADRFGSAARRQVLTVTDAAASRIRHLLQQRQRPFLRLGVKARGCNGLS 60

Query: 61  YTLNYADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           YTLNYAD KGKFDELVED+ +KIL++PKALMHVIGTKMDFVDDKLRS +++
Sbjct: 61  YTLNYADSKGKFDELVEDKGIKILVEPKALMHVIGTKMDFVDDKLRSEFIF 111

[Close]

BLAST of MELO3C012350 vs. TrEMBL
Match: B9HVX2_POPTR (Iron-sulfur cluster assembly complex family protein OS=Populus trichocarpa GN=POPTR_0010s24530g PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.8e-41
Identity = 88/112 (78.57%), Postives = 101/112 (90.18%), Query Frame = 1


Query: 1   MAAS-SSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGL 60
           MAAS +S  FAAA++  G + R+Q+L+LT+AAA RIR LLQQR+RPFLRLGVKARGCNGL
Sbjct: 1   MAASRASKLFAAAAEAVGSSARKQVLSLTDAAATRIRDLLQQRKRPFLRLGVKARGCNGL 60

Query: 61  SYTLNYADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           SYTLNYADEKGKFDELVED+ VKILIDPKALMHVIGTKMDFVDDKLRS +++
Sbjct: 61  SYTLNYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIF 112

[Close]

BLAST of MELO3C012350 vs. TAIR10
Match: AT2G16710.3 (AT2G16710.3 Iron-sulphur cluster biosynthesis family protein)

HSP 1 Score: 161.4 bits (407), Expect = 3.5e-40
Identity = 79/113 (69.91%), Postives = 95/113 (84.07%), Query Frame = 1


Query: 5   SSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLN 64
           +S   AAA+ + GPA+R+Q+LTLT+ AA+R+  LLQQRQ+PFLRLGVKARGCNGLSYTLN
Sbjct: 3   ASQILAAAAARVGPALRKQVLTLTDEAASRVHHLLQQRQKPFLRLGVKARGCNGLSYTLN 62

Query: 65  YA------DEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           YA      DEKGKFDELVE++ V+IL++PKALMHVIGTKMDFVDDKLRS +++
Sbjct: 63  YAGKTSGNDEKGKFDELVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVF 115

[Close]

BLAST of MELO3C012350 vs. TAIR10
Match: AT2G36260.1 (AT2G36260.1 Iron-sulphur cluster biosynthesis family protein)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-34
Identity = 66/92 (71.74%), Postives = 82/92 (89.13%), Query Frame = 1


Query: 20  VRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLNYADEKGKFDELVEDQ 79
           +R+Q+L L++ AAARIRQLLQ +Q+PFLRL V+A+GCNGLSY LNYA EKGKFDE+VE++
Sbjct: 1   MRKQVLALSDTAAARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEK 60

Query: 80  NVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
            VKIL+DPKA+MHVIGT+MDFVDDKLRS +++
Sbjct: 61  GVKILVDPKAVMHVIGTEMDFVDDKLRSEFVF 92

[Close]

BLAST of MELO3C012350 vs. NCBI nr
Match: gi|659091836|ref|XP_008446757.1| (PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 4.1e-51
Identity = 107/111 (96.40%), Postives = 110/111 (99.10%), Query Frame = 1


Query: 1   MAASSSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60
           MAASSSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS
Sbjct: 1   MAASSSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60

Query: 61  YTLNYADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           YTLNYADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRS +++
Sbjct: 61  YTLNYADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSEFIF 111

[Close]

BLAST of MELO3C012350 vs. NCBI nr
Match: gi|449434502|ref|XP_004135035.1| (PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-50
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 1


Query: 1   MAASSSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60
           MAASSSSFFAAASQKAGPA RRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS
Sbjct: 1   MAASSSSFFAAASQKAGPAARRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60

Query: 61  YTLNYADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           YTLNYADEKGKFDELVEDQNVKILI+PKALMHVIGTKMDFVDDKLRS +++
Sbjct: 61  YTLNYADEKGKFDELVEDQNVKILIEPKALMHVIGTKMDFVDDKLRSEFIF 111

[Close]

BLAST of MELO3C012350 vs. NCBI nr
Match: gi|731400858|ref|XP_002282752.2| (PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Vitis vinifera])

HSP 1 Score: 179.1 bits (453), Expect = 4.6e-42
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 1


Query: 5   SSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLN 64
           +SSF AAA+ KAGP++RRQ LTLT+AAA+RIR LLQQRQR FLRLGVKARGCNGLSYTLN
Sbjct: 29  ASSFLAAAAAKAGPSLRRQALTLTDAAASRIRHLLQQRQRTFLRLGVKARGCNGLSYTLN 88

Query: 65  YADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           YAD+KGKFDELVED+ VKILIDPKALMHVIGTKMDFVDDKLRS +++
Sbjct: 89  YADDKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIF 135

[Close]

BLAST of MELO3C012350 vs. NCBI nr
Match: gi|297740107|emb|CBI30289.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 179.1 bits (453), Expect = 4.6e-42
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 1


Query: 5   SSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLN 64
           +SSF AAA+ KAGP++RRQ LTLT+AAA+RIR LLQQRQR FLRLGVKARGCNGLSYTLN
Sbjct: 2   ASSFLAAAAAKAGPSLRRQALTLTDAAASRIRHLLQQRQRTFLRLGVKARGCNGLSYTLN 61

Query: 65  YADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSMWLW 112
           YAD+KGKFDELVED+ VKILIDPKALMHVIGTKMDFVDDKLRS +++
Sbjct: 62  YADDKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIF 108

[Close]

BLAST of MELO3C012350 vs. NCBI nr
Match: gi|743851346|ref|XP_010940112.1| (PREDICTED: iron-sulfur assembly protein IscA-like 3, mitochondrial isoform X2 [Elaeis guineensis])

HSP 1 Score: 176.0 bits (445), Expect = 3.9e-41
Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 1


Query: 5   SSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLN 64
           +SS   A +++AGP+V +Q LTLT+AAAARIR LL  RQRP+LRLGVKARGCNGLSYTLN
Sbjct: 2   ASSSLKAMAERAGPSVCKQALTLTDAAAARIRHLLNIRQRPYLRLGVKARGCNGLSYTLN 61

Query: 65  YADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKL----------RSMWLWGVL 119
           YAD KGKFDELVED+ VKIL+DPKALMHVIGTKMDFVDD L          R+MWLW +L
Sbjct: 62  YADGKGKFDELVEDKGVKILVDPKALMHVIGTKMDFVDDALKVHFHQSKFERAMWLWRIL 121

The following BLAST results are available for this feature:

BLAST of MELO3C012350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ISAM1_ARATH	6.6e-41	73.83	Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana ...	[more]
ISAM3_ARATH	3.0e-33	71.74	Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana ...	[more]
Y484_RICPR	7.8e-18	42.22	Uncharacterized protein RP484 OS=Rickettsia prowazekii (strain Madrid E) GN=RP48...	[more]
ISA1_YEAST	1.3e-17	46.15	Iron-sulfur assembly protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	[more]
ISCA1_DROME	2.3e-17	51.65	Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Drosophila melanogaster...	[more]

BLAST of MELO3C012350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTF0_CUCSA	2.4e-50	94.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G614650 PE=4 SV=1	[more]
F6HKK6_VITVI	3.2e-42	83.18	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03400 PE=4 SV=...	[more]
B8R1J7_EUCGR	4.6e-41	77.48	Iron-sulfer cluster scaffold protein ISA1 (Fragment) OS=Eucalyptus grandis GN=IS...	[more]
A0A059AA55_EUCGR	4.6e-41	77.48	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00259 PE=4 SV=1	[more]
B9HVX2_POPTR	7.8e-41	78.57	Iron-sulfur cluster assembly complex family protein OS=Populus trichocarpa GN=PO...	[more]

BLAST of MELO3C012350 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G16710.3	3.5e-40	69.91	Iron-sulphur cluster biosynthesis family protein	[more]
AT2G36260.1	1.7e-34	71.74	Iron-sulphur cluster biosynthesis family protein	[more]

BLAST of MELO3C012350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091836\|ref\|XP_008446757.1\|	4.1e-51	96.40	PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis melo...	[more]
gi\|449434502\|ref\|XP_004135035.1\|	3.5e-50	94.59	PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis sati...	[more]
gi\|731400858\|ref\|XP_002282752.2\|	4.6e-42	83.18	PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Vitis vinife...	[more]
gi\|297740107\|emb\|CBI30289.3\|	4.6e-42	83.18	unnamed protein product [Vitis vinifera]	[more]
gi\|743851346\|ref\|XP_010940112.1\|	3.9e-41	71.77	PREDICTED: iron-sulfur assembly protein IscA-like 3, mitochondrial isoform X2 [E...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000361	FeS_biogenesis
IPR016092	FeS_cluster_insertion
IPR000361	FeS_biogenesis
IPR016092	FeS_cluster_insertion
IPR017870	FeS_cluster_insertion_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005198	structural molecule activity
GO:0051536	iron-sulfur cluster binding
GO:0005198	structural molecule activity
GO:0051536	iron-sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016226	iron-sulfur cluster assembly
GO:0016226	iron-sulfur cluster assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
biological_process	GO:0008150	biological_process
biological_process	GO:0097428	protein maturation by iron-sulfur cluster transfer
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47645	melon EST collection version 4.0	transcribed_cluster
MU61344	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012350T2	MELO3C012350T2	mRNA
MELO3C012350T1	MELO3C012350T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU61344	MU61344	transcribed_cluster
MU47645	MU47645	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000361	FeS cluster biogenesis	GENE3D	G3DSA:2.60.300.12		coord: 24..117 score: 2.5
IPR000361	FeS cluster biogenesis	PFAM	PF01521	Fe-S_biosyn	coord: 25..124 score: 2.8
IPR000361	FeS cluster biogenesis	unknown	SSF89360	HesB-like domain	coord: 24..117 score: 1.7
IPR016092	FeS cluster insertion protein	TIGRFAMs	TIGR00049	TIGR00049	coord: 25..127 score: 3.6
IPR017870	FeS cluster insertion, C-terminal, conserved site	PROSITE	PS01152	HESB	coord: 109..126 scor
None	No IPR available	PANTHER	PTHR10072	IRON-SULFUR CLUSTER ASSEMBLY PROTEIN	coord: 15..128 score: 7.4
None	No IPR available	PANTHER	PTHR10072:SF51	SUBFAMILY NOT NAMED	coord: 15..128 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012350	Csa5G614650	Cucumber (Chinese Long) v2	cumeB377
MELO3C012350	Cla020489	Watermelon (97103) v1	mewmB061
MELO3C012350	ClCG05G021780	Watermelon (Charleston Gray)	mewcgB062
MELO3C012350	Cla97C05G103500	Watermelon (97103) v2	mewmbB060
MELO3C012350	Bhi07G000635	Wax gourd	mewgoB081
MELO3C012350	CSPI05G26340	Wild cucumber (PI 183967)	cpimeB369
MELO3C012350	Cucsa.282590	Cucumber (Gy14) v1	cgymeB474
MELO3C012350	CmaCh18G009490	Cucurbita maxima (Rimu)	cmameB351
MELO3C012350	CmoCh04G015070	Cucurbita moschata (Rifu)	cmomeB631
MELO3C012350	Lsi04G001520	Bottle gourd (USVL1VR-Ls)	lsimeB281
MELO3C012350	Cp4.1LG09g03640	Cucurbita pepo (Zucchini)	cpemeB024
MELO3C012350	Cp4.1LG01g14330	Cucurbita pepo (Zucchini)	cpemeB363
MELO3C012350	CsGy5G025800	Cucumber (Gy14) v2	cgybmeB319
MELO3C012350	Carg18993	Silver-seed gourd	carmeB1019
MELO3C012350	Carg01902	Silver-seed gourd	carmeB0834
MELO3C012350	CsaV3_5G035380	Cucumber (Chinese Long) v3	cucmeB381

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012350	Cucurbita maxima (Rimu)	cmameB640
MELO3C012350	Cucurbita moschata (Rifu)	cmomeB344
MELO3C012350	Cucurbita moschata (Rifu)	cmomeB652
MELO3C012350	Watermelon (97103) v1	mewmB047
MELO3C012350	Bottle gourd (USVL1VR-Ls)	lsimeB463