CmaCh18G009490 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G009490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Iron-sulfur cluster assembly protein, putative
Location	Cma_Chr18 : 8106611 .. 8110369 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTCTTCGTCTTCCTTCGTCGCCACAGCTTCTCAGAAGGTCGGACCAGCTGCTCGCCGCCAAATTCTTACTCTGACGGAGGCCGCTGCCGCTAGAATTCGACAACTTCTTCAACAGCGCCAGCGTTCATTCCTTCGCCTAGGCGTCAAGTCTCGCGGCTGCAATGGCTTGTCCTATACTCTCAACTATGCAGGTTTGTAATACCTATTGATTTCAAACTTTTATCGATTAGATGCAGCTTCTTTTTAATCATTATACACGTCTGAATTTGGCGGATGTTGATGCTTGGATTTAATACGAGATAAATAGGTATTTGTTGTATTTGAGAGATATAACCTAATTGTTTAGAGGTGACGTGGAGAAACGGAGTCCTCTAGAAGGTGAATTCTTGATATTTAAACTGTTTCCAGCTCTAGCTACCATGAATTACGATGTTAGGCCGATGATTCATCCTGATGATTAGATGTCAAAAAGTTGGAAGTTTAAATGAACCTGTAATTGTGATTTACCGGAATTGGACCTAGCTTTGATATATAACTTGTTCGAAGATGAGCTGTTGAATTATTGCTAATCTTAACAGACGACAAATATGAAGATAAAGCTGACATGCCTGAATGCTGAAGTCTACCGATTAGAGATGACTTTATAGGTTGGGATTGTTAGGGACTCTCACGTTGACTAATTAAGGGGAAGATTATGGTTATATAAGTAAGAGACCCTATCTCAATTGGTACGAGGTTTTTTGGTAAAATCAAAAGTAAAGTTATGAGAGCTTATGCTCAAAGTGGACAATATCATATTATTATGGAGATATGTTGTTCCTATCAAAGACTATGTATGAGATAACTAATAGTTCAGACTTTAAATATATCCGTCCAAGCCCACCGCTAGCAGATGTTGTCCTATTTGAGTTTTCTTTTCTGGGCTTCCCCTCAAGGTTTTAAAACGCGTCTACTAGGGAGAGGTTTTCATGCCTTTATAGGAATGCTTCATTCCTCTCTCCAACCGATGTGGAATCTCACAATCCACCCCTTTAGTGTGCCAGAAAGGCTCGGTGTTTGCCTGTGATTCCATTTGTGACAACTCAAGCCCATTGCTAACAACTATTATCCTCTTTGCCCTTATGGGCTTCAAGATTTTGAAACGCGTCTACTAGGGAGAGGTTTTCACACCTTTATAAGGAATGGTTCGTTCCCCTATTCAACCGACATGGGATCTCACGTTAAATGAGTTATGTGACAGGAAGTTTAGATTCAATAATTTACTTCACAAACTTATGAGAGATGGATTAGTGGGTTATTGAACATATCACAACCCCAGACTAATCTATGGTGAAGATTTACTTCACGAACTTATGAGAGATGGATTAGTTATTAACATGATAGATGGCCAGAAGTTTTCGATTTCAACAATTTTGTTGTAACAACCCAAGCCCACCTCTATTAGATATTGTCCATTTTGACCCATGACGTATCGTCATCGGCCTCACGGTTTTAAAACGCGTATGCTAGGGAGAAGTTTCCACACCTTTATAAAGAATATTTCGTTCTCCTCTCCAACCGACGTGGGATCTCAAACCTGTAGCTTGAGACTTTTTTTATTGTTTGTGTTTATCTAATATTTCTATCCTCTCAGTGAACCGGATTTGCAATTCAGTTTCTTATGGATTCGCTCATGATTGGATAATTTTCTTACTCAGCATTACCTGAGTTTTATAATCACATTATCATTAATTTCCGTTCATTTTCAATGAACAAGAAATAGAATGCAGCCTTTATCTCTCCTTTTGGCACAAATGGACTGTCATGACCTCTATTTCTTTAAACAGTTCAAGATTGCAGTACTTCATTTTAAAGTTTTCTCTTTTCAAATACTTCAGATGAGAAGGGAAAATTTGATGAGCTGGTTGAGGATAAGGACGTGAAGATATTGGTTGATCCAAAGGCGCTGATGCATGTAATAGGAACAAAGATGGACTTTGTAGATGATAAACTGAGGTATTTGAGAACTCTCTACCACAATTTTATATTTTCAGCTCTATTTCTATCCATATGTTGAGGGAATATCCTGCTTCTTAGATACAACTTACAATATCAATCCGACATATAAAAGCTTGTGTGTTTATATTTAAATGAGTAAGCATGTGCATTTGTATGTAAACCTATTGTTCTACATTTATCACGGCACCTCGTGTGAGATCCCATATCGGTTGGAAAGGAAAACGAAGCATTTTGTCTAGAAGTGTGGAAACCACTCCCTAGTAGACGCGTTTTAAAAACTTCAAGGGGAAACTCGAAAGGGAAAGCCCAAAAAGGATAATATTTGCTATGGTGAGCTTGAGCTATTACAAATGGTATCAGAGCCAAGCACCAATGCTGGGCCTCGAAGGGGGATGAATTGTGAGATCCCACGTTAGTTGGACAGGAAAACTACACATTCATTTTAAAAACTTTAAAGGAAAATCCGAAAGGGAAAGCCCAAAGAGAACAAAATCTTCTAGAAGTGAGCTTTGGCGGTTACACCTCGGCAACGATATTTTATTATTTCAGAGTTTGGACATATTTCAATAGGTTTTAATCAGCTGTTTTGATTCTCAAATTTGTTAGGTTATCTCGAGTTTTGATTCTCGAATGAAATCCAACCTTTTAACCCCTGTAGTACTGCTGTATTCAGTTGTGAATGAAACTTAATTTTTTTTTCTGTCTCTGTCTTCTTGGTAGATCCGAGTTCATCTTTATCAATCCAAATTCTAAAGGACAATGTGGGTGTGGGGAGTCGTTTATGACAACAGGCAGTGCAAAGGCAGTTGAACAATGAGCAACTACACCAAGAGAGTGAAACAGTTGTAAGAATGTTTGTTTTATTTATGTCTAATTATATTCTTAAAACCCATTTAAGCAGCCCCTTGTGATCTGCTAATTAGTTTCTTTTGTTTTGTATGTACATATTGTTGAGTGCAGTGGCTAAATAAGTTCTCTGAGGTCAGTAATCAAATTCTCCCACTACTTTCCCTTGTTCTAGAATTTGGTGGTTGAGATCATAGGATAAGAGCACTCCCACTCCCTTCTTGTCAAATGTCTTCATATTTCATATCACTTATCACTTATTAAAGTATAATTCAACAGTTCGCTTATTGAGATCATAGCGAAAATGGTTTAACAATGACTTAAATAATTGAGATTGTTTATTATCACTTACGTTATTTTTTGTGATGTCCCAACACAAACATGTGGAAACCTTCCTCTAGCAGACGCGTTTAAAGCTTTGAGGGAAGTCCGAGAGGGAGAGTCCAAAGAGGACAATATTTGCTAGCGTGGGCTTGGGTTGTTACAAATGGTATCAGAACCAAACACCGGATGATGTGCTAGCCTTCTCGCTATTCCCCGAAGGGGTAGACATGAGGCGGTGTGCTAGTAAGGATGCTGGGCTCTATAGGGGGTGGATTTAGTGGGGCGTCCCACATCAATTCGAGAAATAAATGAGTGCCAGCGAGGACGTTAGGCCCCGAAGGGGGTGGATTATGATGTCCCACATTGTTTGGGGGAAAACGAAACATCATTTATAAGAGAGTTGAAACCTTCTCCTAACAAATGCGTTTTAAAGCCTTGAGGGGAAGTCTGAAAGCTCCCTTAAAGGAAAGTCCAAGGCGGACAATATCGGTTAGCGGTAGGCTTGGACAGAAAGATATGCATAAATAACTAATTTTTTTTGAAATTGGATCATATTAATAGTAAATTAATTTAGTTCTACAAA

mRNA sequence

ATGGCAGCTTCTTCGTCTTCCTTCGTCGCCACAGCTTCTCAGAAGGTCGGACCAGCTGCTCGCCGCCAAATTCTTACTCTGACGGAGGCCGCTGCCGCTAGAATTCGACAACTTCTTCAACAGCGCCAGCGTTCATTCCTTCGCCTAGGCGTCAAGTCTCGCGGCTGCAATGGCTTGTCCTATACTCTCAACTATGCAGATGAGAAGGGAAAATTTGATGAGCTGGTTGAGGATAAGGACGTGAAGATATTGGTTGATCCAAAGGCGCTGATGCATGTAATAGGAACAAAGATGGACTTTGTAGATGATAAACTGAGATCCGAGTTCATCTTTATCAATCCAAATTCTAAAGGACAATGTGGGTGTGGGGAGTCGTTTATGACAACAGGCAGTGCAAAGGCAGTTGAACAATGAGCAACTACACCAAGAGAGTGAAACAGTTTTTCTTTTGTTTTGTATGTACATATTGTTGAGTGCAGTGGCTAAATAAGTTCTCTGAGGTCAGTAATCAAATTCTCCCACTACTTTCCCTTGTTCTAGAATTTGGTGGTTGAGATCATAGGATAAGAGCACTCCCACTCCCTTCTTGTCAAATGTCTTCATATTTCATATCACTTATCACTTATTAAAGTATAATTCAACAGTTCGCTTATTGAGATCATAGCGAAAATGGTTTAACAATGACTTAAATAATTGAGATTGTTTATTATCACTTACGTTATTTTTTGTGATGTCCCAACACAAACATGTGGAAACCTTCCTCTAGCAGACGCGTTTAAAGCTTTGAGGGAAGTCCGAGAGGGAGAGTCCAAAGAGGACAATATTTGCTAGCGTGGGCTTGGGTTGTTACAAATGGTATCAGAACCAAACACCGGATGATGTGCTAGCCTTCTCGCTATTCCCCGAAGGGGTAGACATGAGGCGGTGTGCTAGTAAGGATGCTGGGCTCTATAGGGGGTGGATTTAGTGGGGCGTCCCACATCAATTCGAGAAATAAATGAGTGCCAGCGAGGACGTTAGGCCCCGAAGGGGGTGGATTATGATGTCCCACATTGTTTGGGGGAAAACGAAACATCATTTATAAGAGAGTTGAAACCTTCTCCTAACAAATGCGTTTTAAAGCCTTGAGGGGAAGTCTGAAAGCTCCCTTAAAGGAAAGTCCAAGGCGGACAATATCGGTTAGCGGTAGGCTTGGACAGAAAGATATGCATAAATAACTAATTTTTTTTGAAATTGGATCATATTAATAGTAAATTAATTTAGTTCTACAAA

Coding sequence (CDS)

ATGGCAGCTTCTTCGTCTTCCTTCGTCGCCACAGCTTCTCAGAAGGTCGGACCAGCTGCTCGCCGCCAAATTCTTACTCTGACGGAGGCCGCTGCCGCTAGAATTCGACAACTTCTTCAACAGCGCCAGCGTTCATTCCTTCGCCTAGGCGTCAAGTCTCGCGGCTGCAATGGCTTGTCCTATACTCTCAACTATGCAGATGAGAAGGGAAAATTTGATGAGCTGGTTGAGGATAAGGACGTGAAGATATTGGTTGATCCAAAGGCGCTGATGCATGTAATAGGAACAAAGATGGACTTTGTAGATGATAAACTGAGATCCGAGTTCATCTTTATCAATCCAAATTCTAAAGGACAATGTGGGTGTGGGGAGTCGTTTATGACAACAGGCAGTGCAAAGGCAGTTGAACAATGA

Protein sequence

MAASSSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLNYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTGSAKAVEQ

Homology

[Close]

BLAST of CmaCh18G009490 vs. Swiss-Prot
Match: ISAM1_ARATH (Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-52
Identity = 100/130 (76.92%), Postives = 118/130 (90.77%), Query Frame = 1


Query: 5   SSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLN 64
           +S  +A A+ +VGPA R+Q+LTLT+ AA+R+  LLQQRQ+ FLRLGVK+RGCNGLSYTLN
Sbjct: 3   ASQILAAAAARVGPALRKQVLTLTDEAASRVHHLLQQRQKPFLRLGVKARGCNGLSYTLN 62

Query: 65  YADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 124
           YADEKGKFDELVE+K V+ILV+PKALMHVIGTKMDFVDDKLRSEF+FINPNS+GQCGCGE
Sbjct: 63  YADEKGKFDELVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGE 122

Query: 125 SFMTTGSAKA 135
           SFMTT ++ A
Sbjct: 123 SFMTTSTSSA 132

[Close]

BLAST of CmaCh18G009490 vs. Swiss-Prot
Match: ISAM3_ARATH (Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana GN=At2g36260 PE=3 SV=2)

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-41
Identity = 81/109 (74.31%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 21  RRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLNYADEKGKFDELVEDKD 80
           R+Q+L L++ AAARIRQLLQ +Q+ FLRL V+++GCNGLSY LNYA EKGKFDE+VE+K 
Sbjct: 2   RKQVLALSDTAAARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKG 61

Query: 81  VKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTT 130
           VKILVDPKA+MHVIGT+MDFVDDKLRSEF+F+NPN+  +CGCGESF TT
Sbjct: 62  VKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109

[Close]

BLAST of CmaCh18G009490 vs. Swiss-Prot
Match: ISA1_YEAST (Iron-sulfur assembly protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISA1 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.3e-28
Identity = 57/107 (53.27%), Postives = 79/107 (73.83%), Query Frame = 1


Query: 21  RRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLNYADEKGKFDELVEDKD 80
           R+ ++TL+  A   +R LL Q +   +R+  ++RGC+GL+Y L Y  E GKFDE+VE   
Sbjct: 143 RKALITLSPKAIKHLRALLAQPEPKLIRVSARNRGCSGLTYDLQYITEPGKFDEVVEQDG 202

Query: 81  VKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFM 128
           VKI++D KAL  +IG++MD++DDKL S+F+F NPNSKG CGCGESFM
Sbjct: 203 VKIVIDSKALFSIIGSEMDWIDDKLASKFVFKNPNSKGTCGCGESFM 249

[Close]

BLAST of CmaCh18G009490 vs. Swiss-Prot
Match: ISCA1_DICDI (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.6e-28
Identity = 57/118 (48.31%), Postives = 90/118 (76.27%), Query Frame = 1


Query: 15  KVGPAARRQILTLTEAAAARIRQLLQQRQRSF---LRLGVKSRGCNGLSYTLNYADEKGK 74
           K+G  +++ I ++T++A  R+++++  ++      LRLG+K RGC+G+SYTL++A +K K
Sbjct: 8   KLGKPSKKAIFSMTDSALKRVKEIMNDKKIDNCIGLRLGIKERGCSGMSYTLDFATQKNK 67

Query: 75  FDE-LVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMT 129
           FDE +V DKD+ I+VD KAL+ VIGT+MD++++ ++ EFIFINPN+   CGCGESF T
Sbjct: 68  FDETVVADKDINIIVDSKALLSVIGTEMDYIEEPIKKEFIFINPNATNTCGCGESFTT 125

[Close]

BLAST of CmaCh18G009490 vs. Swiss-Prot
Match: ISCA1_DROME (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Drosophila melanogaster GN=l(1)G0136 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 1


Query: 22  RQILTLTEAAAARIRQLLQQRQRSF-LRLGVKSRGCNGLSYTLNYADEKGKFDELVEDKD 81
           R  LTLT AA  RI+ LLQ +     L++GV+ RGCNGLSYTL+YA +K K DE V    
Sbjct: 23  RAALTLTPAAVLRIKTLLQDKPDMVGLKVGVRQRGCNGLSYTLDYASQKDKLDEEVVQDG 82

Query: 82  VKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESF 127
           VK+ +D KA + ++GT+MDFV+ KL SEF+F NPN KG CGCGESF
Sbjct: 83  VKVFIDKKAQLSLLGTEMDFVESKLSSEFVFNNPNIKGTCGCGESF 128

[Close]

BLAST of CmaCh18G009490 vs. TrEMBL
Match: A0A0A0KTF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G614650 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.0e-60
Identity = 123/134 (91.79%), Postives = 129/134 (96.27%), Query Frame = 1


Query: 1   MAASSSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLS 60
           MAASSSSF A ASQK GPAARRQILTLTEAAAARIRQLLQQRQR FLRLGVK+RGCNGLS
Sbjct: 1   MAASSSSFFAAASQKAGPAARRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60

Query: 61  YTLNYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120
           YTLNYADEKGKFDELVED++VKIL++PKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC
Sbjct: 61  YTLNYADEKGKFDELVEDQNVKILIEPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120

Query: 121 GCGESFMTTGSAKA 135
           GCGESFMTT SA+A
Sbjct: 121 GCGESFMTTSSAEA 134

[Close]

BLAST of CmaCh18G009490 vs. TrEMBL
Match: F6HKK6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03400 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.4e-55
Identity = 110/132 (83.33%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 5   SSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLN 64
           +SSF+A A+ K GP+ RRQ LTLT+AAA+RIR LLQQRQR+FLRLGVK+RGCNGLSYTLN
Sbjct: 29  ASSFLAAAAAKAGPSLRRQALTLTDAAASRIRHLLQQRQRTFLRLGVKARGCNGLSYTLN 88

Query: 65  YADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 124
           YAD+KGKFDELVEDK VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE
Sbjct: 89  YADDKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 148

Query: 125 SFMTTGSAKAVE 137
           SFMTTG+  A +
Sbjct: 149 SFMTTGNPGAAK 160

[Close]

BLAST of CmaCh18G009490 vs. TrEMBL
Match: B9SRX1_RICCO (Iron-sulfur cluster assembly protein, putative OS=Ricinus communis GN=RCOM_0516930 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.9e-54
Identity = 109/133 (81.95%), Postives = 121/133 (90.98%), Query Frame = 1


Query: 5   SSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLN 64
           +S  +A A++K+GPAARRQ LTLT+AAA+RIR LLQQRQR FL+LGVK+RGCNGLSYTLN
Sbjct: 2   ASKLLAAAAEKIGPAARRQALTLTDAAASRIRHLLQQRQRPFLKLGVKARGCNGLSYTLN 61

Query: 65  YADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 124
           YADEK KFDELVE+K VKIL+DPKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGE
Sbjct: 62  YADEKAKFDELVEEKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGE 121

Query: 125 SFMTTGSAKAVEQ 138
           SFMTT SA   EQ
Sbjct: 122 SFMTTSSAGDAEQ 134

[Close]

BLAST of CmaCh18G009490 vs. TrEMBL
Match: A0A0K9QLU5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_164410 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.2e-54
Identity = 107/132 (81.06%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 6   SSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLNY 65
           ++F+A A++K GP  RRQ L+L++AAA RI+QLLQQRQRSFLRLGVK+RGCNGLSYTLNY
Sbjct: 2   AAFLAKAAEKAGPTIRRQALSLSDAAATRIQQLLQQRQRSFLRLGVKARGCNGLSYTLNY 61

Query: 66  ADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGES 125
           ADEKGKFDEL+EDK VKIL++PKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGES
Sbjct: 62  ADEKGKFDELIEDKGVKILIEPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGES 121

Query: 126 FMTTGSAKAVEQ 138
           FMTT S++A +Q
Sbjct: 122 FMTTSSSEASKQ 133

[Close]

BLAST of CmaCh18G009490 vs. TrEMBL
Match: A0A103Y9P2_CYNCS (FeS cluster biogenesis OS=Cynara cardunculus var. scolymus GN=Ccrd_016577 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 7.1e-54
Identity = 108/133 (81.20%), Postives = 121/133 (90.98%), Query Frame = 1


Query: 4   SSSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTL 63
           ++S   A A++++G AARRQ LTLTEAAA RIR LLQQRQR FL+LGVK+RGCNGLSYTL
Sbjct: 37  ATSKLAAAAAERLGTAARRQALTLTEAAAGRIRHLLQQRQRPFLKLGVKARGCNGLSYTL 96

Query: 64  NYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 123
           NYADEKGKFDEL+EDK VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG
Sbjct: 97  NYADEKGKFDELIEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 156

Query: 124 ESFMTTGSAKAVE 137
           ESFMTT +A+A +
Sbjct: 157 ESFMTTSTAEATK 169

[Close]

BLAST of CmaCh18G009490 vs. TAIR10
Match: AT2G16710.3 (AT2G16710.3 Iron-sulphur cluster biosynthesis family protein)

HSP 1 Score: 200.7 bits (509), Expect = 5.9e-52
Identity = 100/136 (73.53%), Postives = 118/136 (86.76%), Query Frame = 1


Query: 5   SSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLN 64
           +S  +A A+ +VGPA R+Q+LTLT+ AA+R+  LLQQRQ+ FLRLGVK+RGCNGLSYTLN
Sbjct: 3   ASQILAAAAARVGPALRKQVLTLTDEAASRVHHLLQQRQKPFLRLGVKARGCNGLSYTLN 62

Query: 65  YA------DEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKG 124
           YA      DEKGKFDELVE+K V+ILV+PKALMHVIGTKMDFVDDKLRSEF+FINPNS+G
Sbjct: 63  YAGKTSGNDEKGKFDELVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQG 122

Query: 125 QCGCGESFMTTGSAKA 135
           QCGCGESFMTT ++ A
Sbjct: 123 QCGCGESFMTTSTSSA 138

[Close]

BLAST of CmaCh18G009490 vs. TAIR10
Match: AT2G36260.1 (AT2G36260.1 Iron-sulphur cluster biosynthesis family protein)

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-42
Identity = 81/109 (74.31%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 21  RRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLNYADEKGKFDELVEDKD 80
           R+Q+L L++ AAARIRQLLQ +Q+ FLRL V+++GCNGLSY LNYA EKGKFDE+VE+K 
Sbjct: 2   RKQVLALSDTAAARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKG 61

Query: 81  VKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTT 130
           VKILVDPKA+MHVIGT+MDFVDDKLRSEF+F+NPN+  +CGCGESF TT
Sbjct: 62  VKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109

[Close]

BLAST of CmaCh18G009490 vs. NCBI nr
Match: gi|449434502|ref|XP_004135035.1| (PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 4.3e-60
Identity = 123/134 (91.79%), Postives = 129/134 (96.27%), Query Frame = 1


Query: 1   MAASSSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLS 60
           MAASSSSF A ASQK GPAARRQILTLTEAAAARIRQLLQQRQR FLRLGVK+RGCNGLS
Sbjct: 1   MAASSSSFFAAASQKAGPAARRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60

Query: 61  YTLNYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120
           YTLNYADEKGKFDELVED++VKIL++PKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC
Sbjct: 61  YTLNYADEKGKFDELVEDQNVKILIEPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120

Query: 121 GCGESFMTTGSAKA 135
           GCGESFMTT SA+A
Sbjct: 121 GCGESFMTTSSAEA 134

[Close]

BLAST of CmaCh18G009490 vs. NCBI nr
Match: gi|659091836|ref|XP_008446757.1| (PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis melo])

HSP 1 Score: 239.2 bits (609), Expect = 4.3e-60
Identity = 123/134 (91.79%), Postives = 128/134 (95.52%), Query Frame = 1


Query: 1   MAASSSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLS 60
           MAASSSSF A ASQK GPA RRQILTLTEAAAARIRQLLQQRQR FLRLGVK+RGCNGLS
Sbjct: 1   MAASSSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60

Query: 61  YTLNYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120
           YTLNYADEKGKFDELVED++VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC
Sbjct: 61  YTLNYADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120

Query: 121 GCGESFMTTGSAKA 135
           GCGESFMTT SA+A
Sbjct: 121 GCGESFMTTSSAEA 134

[Close]

BLAST of CmaCh18G009490 vs. NCBI nr
Match: gi|297740107|emb|CBI30289.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 221.5 bits (563), Expect = 9.2e-55
Identity = 110/132 (83.33%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 5   SSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLN 64
           +SSF+A A+ K GP+ RRQ LTLT+AAA+RIR LLQQRQR+FLRLGVK+RGCNGLSYTLN
Sbjct: 2   ASSFLAAAAAKAGPSLRRQALTLTDAAASRIRHLLQQRQRTFLRLGVKARGCNGLSYTLN 61

Query: 65  YADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 124
           YAD+KGKFDELVEDK VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE
Sbjct: 62  YADDKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 121

Query: 125 SFMTTGSAKAVE 137
           SFMTTG+  A +
Sbjct: 122 SFMTTGNPGAAK 133

[Close]

BLAST of CmaCh18G009490 vs. NCBI nr
Match: gi|731400858|ref|XP_002282752.2| (PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Vitis vinifera])

HSP 1 Score: 221.5 bits (563), Expect = 9.2e-55
Identity = 110/132 (83.33%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 5   SSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLN 64
           +SSF+A A+ K GP+ RRQ LTLT+AAA+RIR LLQQRQR+FLRLGVK+RGCNGLSYTLN
Sbjct: 29  ASSFLAAAAAKAGPSLRRQALTLTDAAASRIRHLLQQRQRTFLRLGVKARGCNGLSYTLN 88

Query: 65  YADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 124
           YAD+KGKFDELVEDK VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE
Sbjct: 89  YADDKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 148

Query: 125 SFMTTGSAKAVE 137
           SFMTTG+  A +
Sbjct: 149 SFMTTGNPGAAK 160

[Close]

BLAST of CmaCh18G009490 vs. NCBI nr
Match: gi|255575681|ref|XP_002528740.1| (PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Ricinus communis])

HSP 1 Score: 219.9 bits (559), Expect = 2.7e-54
Identity = 109/133 (81.95%), Postives = 121/133 (90.98%), Query Frame = 1


Query: 5   SSSFVATASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKSRGCNGLSYTLN 64
           +S  +A A++K+GPAARRQ LTLT+AAA+RIR LLQQRQR FL+LGVK+RGCNGLSYTLN
Sbjct: 2   ASKLLAAAAEKIGPAARRQALTLTDAAASRIRHLLQQRQRPFLKLGVKARGCNGLSYTLN 61

Query: 65  YADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 124
           YADEK KFDELVE+K VKIL+DPKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGE
Sbjct: 62  YADEKAKFDELVEEKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGE 121

Query: 125 SFMTTGSAKAVEQ 138
           SFMTT SA   EQ
Sbjct: 122 SFMTTSSAGDAEQ 134

The following BLAST results are available for this feature:

BLAST of CmaCh18G009490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ISAM1_ARATH	1.1e-52	76.92	Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana ...	[more]
ISAM3_ARATH	2.0e-41	74.31	Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana ...	[more]
ISA1_YEAST	7.3e-28	53.27	Iron-sulfur assembly protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	[more]
ISCA1_DICDI	9.6e-28	48.31	Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideu...	[more]
ISCA1_DROME	1.1e-26	57.55	Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Drosophila melanogaster...	[more]

BLAST of CmaCh18G009490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTF0_CUCSA	3.0e-60	91.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G614650 PE=4 SV=1	[more]
F6HKK6_VITVI	6.4e-55	83.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03400 PE=4 SV=...	[more]
B9SRX1_RICCO	1.9e-54	81.95	Iron-sulfur cluster assembly protein, putative OS=Ricinus communis GN=RCOM_05169...	[more]
A0A0K9QLU5_SPIOL	4.2e-54	81.06	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_164410 PE=4 SV=1	[more]
A0A103Y9P2_CYNCS	7.1e-54	81.20	FeS cluster biogenesis OS=Cynara cardunculus var. scolymus GN=Ccrd_016577 PE=4 S...	[more]

BLAST of CmaCh18G009490 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G16710.3	5.9e-52	73.53	Iron-sulphur cluster biosynthesis family protein	[more]
AT2G36260.1	1.1e-42	74.31	Iron-sulphur cluster biosynthesis family protein	[more]

BLAST of CmaCh18G009490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434502\|ref\|XP_004135035.1\|	4.3e-60	91.79	PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis sati...	[more]
gi\|659091836\|ref\|XP_008446757.1\|	4.3e-60	91.79	PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis melo...	[more]
gi\|297740107\|emb\|CBI30289.3\|	9.2e-55	83.33	unnamed protein product [Vitis vinifera]	[more]
gi\|731400858\|ref\|XP_002282752.2\|	9.2e-55	83.33	PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Vitis vinife...	[more]
gi\|255575681\|ref\|XP_002528740.1\|	2.7e-54	81.95	PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Ricinus comm...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000361	FeS_biogenesis
IPR016092	FeS_cluster_insertion
IPR017870	FeS_cluster_insertion_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005198	structural molecule activity
GO:0051536	iron-sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016226	iron-sulfur cluster assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0097428	protein maturation by iron-sulfur cluster transfer
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0005198	structural molecule activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G009490.1	CmaCh18G009490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000361	FeS cluster biogenesis	GENE3D	G3DSA:2.60.300.12		coord: 24..117 score: 6.2
IPR000361	FeS cluster biogenesis	PFAM	PF01521	Fe-S_biosyn	coord: 25..124 score: 3.7
IPR000361	FeS cluster biogenesis	unknown	SSF89360	HesB-like domain	coord: 24..117 score: 8.63
IPR016092	FeS cluster insertion protein	TIGRFAMs	TIGR00049	TIGR00049	coord: 25..127 score: 3.6
IPR017870	FeS cluster insertion, C-terminal, conserved site	PROSITE	PS01152	HESB	coord: 109..126 scor
None	No IPR available	PANTHER	PTHR10072	IRON-SULFUR CLUSTER ASSEMBLY PROTEIN	coord: 15..128 score: 7.6
None	No IPR available	PANTHER	PTHR10072:SF51	SUBFAMILY NOT NAMED	coord: 15..128 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G009490	Cucsa.282590	Cucumber (Gy14) v1	cgycmaB0797
CmaCh18G009490	Cla020489	Watermelon (97103) v1	cmawmB372
CmaCh18G009490	Csa5G614650	Cucumber (Chinese Long) v2	cmacuB417
CmaCh18G009490	MELO3C012350	Melon (DHL92) v3.5.1	cmameB351
CmaCh18G009490	ClCG05G021780	Watermelon (Charleston Gray)	cmawcgB364
CmaCh18G009490	CSPI05G26340	Wild cucumber (PI 183967)	cmacpiB423
CmaCh18G009490	CmoCh04G015070	Cucurbita moschata (Rifu)	cmacmoB420
CmaCh18G009490	Lsi04G001520	Bottle gourd (USVL1VR-Ls)	cmalsiB379
CmaCh18G009490	Cp4.1LG09g03640	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G009490	Cp4.1LG01g14330	Cucurbita pepo (Zucchini)	cmacpeB429
CmaCh18G009490	MELO3C012350.2	Melon (DHL92) v3.6.1	cmamedB408
CmaCh18G009490	CsaV3_5G035380	Cucumber (Chinese Long) v3	cmacucB0498
CmaCh18G009490	Cla97C05G103500	Watermelon (97103) v2	cmawmbB423
CmaCh18G009490	Bhi07G000635	Wax gourd	cmawgoB0544
CmaCh18G009490	CsGy5G025800	Cucumber (Gy14) v2	cgybcmaB626
CmaCh18G009490	Carg18993	Silver-seed gourd	carcmaB1456
CmaCh18G009490	Carg01902	Silver-seed gourd	carcmaB1167

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G009490	CmaCh04G014360	Cucurbita maxima (Rimu)	cmacmaB402

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G009490	Cucurbita moschata (Rifu)	cmacmoB406