Cp4.1LG09g03640 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g03640
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionIron-sulfur cluster assembly protein, putative
LocationCp4.1LG09 : 2238036 .. 2241645 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTTTGGAGCAAATGAACCTTCGCGAGTGTATCTGCAGAGGAGAAAATCGATTGGCGGCAGGACGATCGAGAGAAAATGGCAGCTTCTTCGTCTTCCTTCTTCGCCGCAGCTTCTCAGAAGGTCGGACCTGCCGCTCGCCGCCAAATTCTTACCCTGACGGAGGCCGCTGCCGCTAGAATTCGACAACTCCTTCAACAGCGCCAGCGTTCATTCCTTCGCCTAGGCGTCAAGGCTCGCGGCTGCAATGGCTTGTCCTATACTCTCAACTATGCAGGTTTGTAATACCTATTGATTTCAAACTTTTCTCGGTTATATGCAGTTTCTTTTTAATCATTATACACGTCTGAGTTTAAGGATGTGATGGAATTTGGCTGTTATGTATCTTCTTTTCTGTGAATCGGATGTTGATGCTTGGATTTAATACGAGATAAATAGGTATTTGATGTATTTGAGCGATGTAACCTAATTGTTTAGAGGTGACATGGAGAAACCGGAGTCCTCTAGAAGGTGAATTCTTGATATTTAAACTGTTTCCAGCTCTAGCTACCATGAATTACGATGTTAGGTAGGCCGAGGATTTATCCTGATGATTAGATGTCGAAAAGTTGGAAGTTTAAATGAACCTGTAATTGTGATTTACCGGAATTGGACCTAGGTTTGATATGTAACTTGTTCGAAGATGAACTGTTGAATTCTTGCTAATCTCAACAGACGACAGATATGAAAGACAAAGCTGACATGCCTGAATGCTGAAGTCTTCCGATTAGAGATGACTTTATTTGATAGGATTGTTGGAGTCTCACCTTGGCTAATGAAGGGAAAGATTATCCATTGGTATGAGGCCTTTTGGTAAAACCAAAAGTAAAGTCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTATGGAGATTTGTTGTTCCTATCAAGGACCATGTATGAGATAACTAATAGTTTAGACTTTAAATGTAACAGCCCAAGCTCACTGCTAGCGGATATTGTCATCTTTGGGTTTTCTCTTTTGGACTTCCCCTCAAGGTTTTAAAACGCGTTTACTAGGGAGAGATTTTCACACCTTTATAAATAATGCTTCGTTCCTCTCTCCAATCGACGTGGAATCTCACAATCCACCCACTTCGAGGCTCAACGTTCTCGTTGACACACCGCCCGGTGCCTGGCTCTGATACCATTTGTAACAGACCAAGCCCCCTGCTAGCAGATATTGTACTCTTTGAGGTTTCCCTTCTAGGCTTCCTTTCAAGGTTTTAAAACGCGTCTACCAGGGAGAGGTTTTCACACCTTTATAAAATATCTTTCATTCCCCTCTCCAACCGACGTGCTCACATTAAATCAGTTATGTGACAGGAAGTTTAGATTCAATAATTTACTTCACAAACTTATGAAATAGGGATTAGTGGATTATTAAATATATCCAATCCCAGACTAATTTATGGTGAACATTTGCTTCCATCAAGTACAATTTCCTTCGTGGTAGGTTGGGTATGTGAAAACATAGCAGGAGTACTCTTTGTGCCTGTGAGTGTTTGTCTCTCTGTCTCTCTATCCTGATATGGTTAGTTAGAATCTTATTGGACCAAAGTGCTATTTCTATTCAATTAGAAGATAAATGGGTTAGCAAGGCTCCATGGGTCATCATGGAAAGAATAGTTATTAACATGATAGATGGCCAGAAGTTCTCAATTCAACACATCTGTTGTAACAATCCAAGCCCACTGCTAGTAGATATTGTCTATTTTGACTCATTACTTATCGTCATCAGTCTCACGGTTTTAAAACACGTATGCTAGGAAGAAGTTTCCACACCTTTATAAGGAATGCTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACACCTGTAGCTTGAGACTTTTTTATTGTTTGTGTTTATCTAATATTTCTATCCTCTTAGTGAACCGGATTTGCAATTCAGTTTCTTATGGATTCGCTCATGATTCGAGAATTTTCTTACTCAGCATTACGTAATTTTTATAATCACATTATCATTAATTTCCGTTTATTTTCATTGAACAAGAAATAGAGTGCAGCCTTTATCTCTCCTTTTGGCATGAATGGACTGTCATGACCTCTATTTCTTTAAACAGTTCAAGATTGCAGTACTTCATTTTAAAGTTTTCTCTTTCCAAATACTTCAGATGAGAAGGGGAAATTTGATGAGTTGGTTGAGGATAAGGACGTGAAGATATTGGTTGATCCAAAGGCGCTGATGCATGTAATAGGAACAAAGATGGACTTCGTAGATGACAAACTGAGGTATTTGAGAACTCTCTACCACAATTTTATATTTTCAGCTCTATTTCAATCCATTTGTTAAGGGAATGTCCTGCTTGTTAGTTACAACTTACAATATCAAACCGACATATAAAAGCTTGCGTATTTATATTTAAATGTCGATGAGTAAGCATGTGCATTTGTACGTAAACCTATTGTTCCACATTTATCAGGGCACCTCATGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACATTCTTTATAAAGGTGTGGAAACCTTTCCCTAATAGACGCGTTTTAAAAAGAACAATATTTGCTAGCGGTGAGCTTGAGCTATTACAAATGGTATCAGAGCCAGGCACCGTGCGGTGTGCCAGCGACGATGCTGAGCCTCGAAGGGTGGTGGATGTGAGATCCGACATCTATTGGAGGGGGGATGAATTGTGAGATCTCACATCAGTTGAAGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACATCTCCCTAATAAACACATTTTAAAAACCTCGAAGGAAAATCCAAAAGGGAAATCCCAAAGAGGACAATATCTTCTAACAGTGAGCTTCGGTTGTTACACCTCGGCAATGATATTTTATTATTTCAGAGTTTGGACATATTTGAAGAGGTTTTAATCAGCTGTTTTGATTATCGAATTTGTTAGGTTATCTCGAGTTTTGATTCTCCAATCAAATCCAACCTTTTAACCCCTGTAGTACTCTGCTGTATTCAGTTGTCAATGAAACTTAATATTTCTTTCTCTCTGTCTCTGTCTTCTTGGCAGATCTGAGTTCATCTTTATCAATCCAAATTCTAAAGGACAATGTGGGTGTGGGGAGTCCTTTATGACAACAACAGGCAGTGCAAAATTCAAACTCCCAAGAGAGTGAAACAGCTGTAAGAATGTTTGTTTTTATGTGTAATTATATTATATTGTTTAAAAACCATTTAAGCAGCAGCCCCTTGTGATCTGCTAATTACTTTCTTTTGTTTTGTATGTACATATTGTAGACTGCTGTGGCTAAATAAGTTCTGAGGTCAGTAATCAAATTCTCCCACTACTTTCCCTTGTTCTAGAATTTGGTGGTTGAGATCATATGATAAGAGCACTCTCACTCCCTTCTTGTCAAATATCTTCATATTTCATATCACTTATCACTTATTGAAGTATATTTCAACAGTTCACTTGTTGAGATCATAGGATTTGGTGGTTCAGATCATAGGATAAGAATGTTTTGTTTCTTTAAACGAAATGCAAAATTCAAGTGTTTTTATTAATGTAGCGAAAATGGTATAGCACTCACTT

mRNA sequence

AAAGTTTGGAGCAAATGAACCTTCGCGAGTGTATCTGCAGAGGAGAAAATCGATTGGCGGCAGGACGATCGAGAGAAAATGGCAGCTTCTTCGTCTTCCTTCTTCGCCGCAGCTTCTCAGAAGGTCGGACCTGCCGCTCGCCGCCAAATTCTTACCCTGACGGAGGCCGCTGCCGCTAGAATTCGACAACTCCTTCAACAGCGCCAGCGTTCATTCCTTCGCCTAGGCGTCAAGGCTCGCGGCTGCAATGGCTTGTCCTATACTCTCAACTATGCAGATGAGAAGGGGAAATTTGATGAGTTGGTTGAGGATAAGGACGTGAAGATATTGGTTGATCCAAAGGCGCTGATGCATGTAATAGGAACAAAGATGGACTTCGTAGATGACAAACTGAGATCTGAGTTCATCTTTATCAATCCAAATTCTAAAGGACAATGTGGGTGTGGGGAGTCCTTTATGACAACAACAGGCAGTGCAAAATTCAAACTCCCAAGAGAGTGAAACAGCTACTGCTGTGGCTAAATAAGTTCTGAGGTCAGTAATCAAATTCTCCCACTACTTTCCCTTGTTCTAGAATTTGGTGGTTGAGATCATATGATAAGAGCACTCTCACTCCCTTCTTGTCAAATATCTTCATATTTCATATCACTTATCACTTATTGAAGTATATTTCAACAGTTCACTTGTTGAGATCATAGGATTTGGTGGTTCAGATCATAGGATAAGAATGTTTTGTTTCTTTAAACGAAATGCAAAATTCAAGTGTTTTTATTAATGTAGCGAAAATGGTATAGCACTCACTT

Coding sequence (CDS)

ATGGCAGCTTCTTCGTCTTCCTTCTTCGCCGCAGCTTCTCAGAAGGTCGGACCTGCCGCTCGCCGCCAAATTCTTACCCTGACGGAGGCCGCTGCCGCTAGAATTCGACAACTCCTTCAACAGCGCCAGCGTTCATTCCTTCGCCTAGGCGTCAAGGCTCGCGGCTGCAATGGCTTGTCCTATACTCTCAACTATGCAGATGAGAAGGGGAAATTTGATGAGTTGGTTGAGGATAAGGACGTGAAGATATTGGTTGATCCAAAGGCGCTGATGCATGTAATAGGAACAAAGATGGACTTCGTAGATGACAAACTGAGATCTGAGTTCATCTTTATCAATCCAAATTCTAAAGGACAATGTGGGTGTGGGGAGTCCTTTATGACAACAACAGGCAGTGCAAAATTCAAACTCCCAAGAGAGTGA

Protein sequence

MAASSSSFFAAASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTLNYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTTGSAKFKLPRE
Homology
[Close]
BLAST of Cp4.1LG09g03640 vs. Swiss-Prot
Match: ISAM1_ARATH (Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-53
Identity = 105/131 (80.15%), Postives = 119/131 (90.84%), Query Frame = 1 

Query: 5   SSSFFAAASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTLN 64
           +S   AAA+ +VGPA R+Q+LTLT+ AA+R+  LLQQRQ+ FLRLGVKARGCNGLSYTLN
Sbjct: 3   ASQILAAAAARVGPALRKQVLTLTDEAASRVHHLLQQRQKPFLRLGVKARGCNGLSYTLN 62

Query: 65  YADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 124
           YADEKGKFDELVE+K V+ILV+PKALMHVIGTKMDFVDDKLRSEF+FINPNS+GQCGCGE
Sbjct: 63  YADEKGKFDELVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGE 122

Query: 125 SFMTT-TGSAK 135
           SFMTT T SAK
Sbjct: 123 SFMTTSTSSAK 133

[Close]
BLAST of Cp4.1LG09g03640 vs. Swiss-Prot
Match: ISAM3_ARATH (Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana GN=At2g36260 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 7.0e-42
Identity = 82/109 (75.23%), Postives = 98/109 (89.91%), Query Frame = 1 

Query: 21  RRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTLNYADEKGKFDELVEDKD 80
           R+Q+L L++ AAARIRQLLQ +Q+ FLRL V+A+GCNGLSY LNYA EKGKFDE+VE+K 
Sbjct: 2   RKQVLALSDTAAARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKG 61

Query: 81  VKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTT 130
           VKILVDPKA+MHVIGT+MDFVDDKLRSEF+F+NPN+  +CGCGESF TT
Sbjct: 62  VKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109

[Close]
BLAST of Cp4.1LG09g03640 vs. Swiss-Prot
Match: ISCA1_DICDI (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-28
Identity = 61/131 (46.56%), Postives = 96/131 (73.28%), Query Frame = 1 

Query: 15  KVGPAARRQILTLTEAAAARIRQLLQQRQRSF---LRLGVKARGCNGLSYTLNYADEKGK 74
           K+G  +++ I ++T++A  R+++++  ++      LRLG+K RGC+G+SYTL++A +K K
Sbjct: 8   KLGKPSKKAIFSMTDSALKRVKEIMNDKKIDNCIGLRLGIKERGCSGMSYTLDFATQKNK 67

Query: 75  FDE-LVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTT 134
           FDE +V DKD+ I+VD KAL+ VIGT+MD++++ ++ EFIFINPN+   CGCGESF T  
Sbjct: 68  FDETVVADKDINIIVDSKALLSVIGTEMDYIEEPIKKEFIFINPNATNTCGCGESFTTKD 127

Query: 135 GS-AKFKLPRE 141
            S    KLP++
Sbjct: 128 FSIPDLKLPKK 138

[Close]
BLAST of Cp4.1LG09g03640 vs. Swiss-Prot
Match: ISA1_YEAST (Iron-sulfur assembly protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISA1 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.8e-28
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1 

Query: 21  RRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTLNYADEKGKFDELVEDKD 80
           R+ ++TL+  A   +R LL Q +   +R+  + RGC+GL+Y L Y  E GKFDE+VE   
Sbjct: 143 RKALITLSPKAIKHLRALLAQPEPKLIRVSARNRGCSGLTYDLQYITEPGKFDEVVEQDG 202

Query: 81  VKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFM 128
           VKI++D KAL  +IG++MD++DDKL S+F+F NPNSKG CGCGESFM
Sbjct: 203 VKIVIDSKALFSIIGSEMDWIDDKLASKFVFKNPNSKGTCGCGESFM 249

[Close]
BLAST of Cp4.1LG09g03640 vs. Swiss-Prot
Match: ISCA1_DROME (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Drosophila melanogaster GN=l(1)G0136 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.3e-27
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 1 

Query: 22  RQILTLTEAAAARIRQLLQQRQRSF-LRLGVKARGCNGLSYTLNYADEKGKFDELVEDKD 81
           R  LTLT AA  RI+ LLQ +     L++GV+ RGCNGLSYTL+YA +K K DE V    
Sbjct: 23  RAALTLTPAAVLRIKTLLQDKPDMVGLKVGVRQRGCNGLSYTLDYASQKDKLDEEVVQDG 82

Query: 82  VKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESF 127
           VK+ +D KA + ++GT+MDFV+ KL SEF+F NPN KG CGCGESF
Sbjct: 83  VKVFIDKKAQLSLLGTEMDFVESKLSSEFVFNNPNIKGTCGCGESF 128

[Close]
BLAST of Cp4.1LG09g03640 vs. TrEMBL
Match: A0A0A0KTF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G614650 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.0e-60
Identity = 123/132 (93.18%), Postives = 129/132 (97.73%), Query Frame = 1 

Query: 1   MAASSSSFFAAASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLS 60
           MAASSSSFFAAASQK GPAARRQILTLTEAAAARIRQLLQQRQR FLRLGVKARGCNGLS
Sbjct: 1   MAASSSSFFAAASQKAGPAARRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60

Query: 61  YTLNYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120
           YTLNYADEKGKFDELVED++VKIL++PKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC
Sbjct: 61  YTLNYADEKGKFDELVEDQNVKILIEPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120

Query: 121 GCGESFMTTTGS 133
           GCGESFMTT+ +
Sbjct: 121 GCGESFMTTSSA 132

[Close]
BLAST of Cp4.1LG09g03640 vs. TrEMBL
Match: A0A0D2U2J9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G403300 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.7e-55
Identity = 113/129 (87.60%), Postives = 121/129 (93.80%), Query Frame = 1 

Query: 5   SSSFFAAASQKVG-PAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTL 64
           +S  FA A++K+G PA RRQ+LTLT+AAA+RI  LLQQRQRSFLRLGVKARGCNGLSYTL
Sbjct: 2   ASRLFATAAEKIGQPALRRQVLTLTDAAASRIHHLLQQRQRSFLRLGVKARGCNGLSYTL 61

Query: 65  NYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 124
           NYADEKGKFDELVEDK VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG
Sbjct: 62  NYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 121

Query: 125 ESFMTTTGS 133
           ESFMTTTGS
Sbjct: 122 ESFMTTTGS 130

[Close]
BLAST of Cp4.1LG09g03640 vs. TrEMBL
Match: F6HKK6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03400 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.6e-55
Identity = 113/132 (85.61%), Postives = 122/132 (92.42%), Query Frame = 1 

Query: 5   SSSFFAAASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTLN 64
           +SSF AAA+ K GP+ RRQ LTLT+AAA+RIR LLQQRQR+FLRLGVKARGCNGLSYTLN
Sbjct: 29  ASSFLAAAAAKAGPSLRRQALTLTDAAASRIRHLLQQRQRTFLRLGVKARGCNGLSYTLN 88

Query: 65  YADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 124
           YAD+KGKFDELVEDK VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE
Sbjct: 89  YADDKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 148

Query: 125 SFMTT--TGSAK 135
           SFMTT   G+AK
Sbjct: 149 SFMTTGNPGAAK 160

[Close]
BLAST of Cp4.1LG09g03640 vs. TrEMBL
Match: A0A0B0NE47_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_19006 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.6e-55
Identity = 112/129 (86.82%), Postives = 120/129 (93.02%), Query Frame = 1 

Query: 5   SSSFFAAASQKVG-PAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTL 64
           +S  FA A++K+G PA RRQ+LTLT+AAA+RI  LLQQRQRSFLRLGVKARGCNGLSYTL
Sbjct: 2   ASRLFATAAEKIGQPALRRQVLTLTDAAASRIHHLLQQRQRSFLRLGVKARGCNGLSYTL 61

Query: 65  NYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 124
           NYADEKGKFDELVEDK VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG
Sbjct: 62  NYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 121

Query: 125 ESFMTTTGS 133
           ESFMTT GS
Sbjct: 122 ESFMTTAGS 130

[Close]
BLAST of Cp4.1LG09g03640 vs. TrEMBL
Match: A0A0B0NEF2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15045 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.5e-54
Identity = 111/129 (86.05%), Postives = 119/129 (92.25%), Query Frame = 1 

Query: 5   SSSFFAAASQKVG-PAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTL 64
           +S  FA A++K+G PA R Q+LTLT+AAA+RI  LLQQRQRSFLRLGVKARGCNGLSYTL
Sbjct: 2   ASRLFATAAEKIGQPALRWQVLTLTDAAASRIHHLLQQRQRSFLRLGVKARGCNGLSYTL 61

Query: 65  NYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 124
           NYADEKGKFDELVEDK VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG
Sbjct: 62  NYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 121

Query: 125 ESFMTTTGS 133
           ESFMTT GS
Sbjct: 122 ESFMTTAGS 130

[Close]
BLAST of Cp4.1LG09g03640 vs. TAIR10
Match: AT2G16710.3 (AT2G16710.3 Iron-sulphur cluster biosynthesis family protein)

HSP 1 Score: 203.8 bits (517), Expect = 7.2e-53
Identity = 105/137 (76.64%), Postives = 119/137 (86.86%), Query Frame = 1 

Query: 5   SSSFFAAASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTLN 64
           +S   AAA+ +VGPA R+Q+LTLT+ AA+R+  LLQQRQ+ FLRLGVKARGCNGLSYTLN
Sbjct: 3   ASQILAAAAARVGPALRKQVLTLTDEAASRVHHLLQQRQKPFLRLGVKARGCNGLSYTLN 62

Query: 65  YA------DEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKG 124
           YA      DEKGKFDELVE+K V+ILV+PKALMHVIGTKMDFVDDKLRSEF+FINPNS+G
Sbjct: 63  YAGKTSGNDEKGKFDELVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQG 122

Query: 125 QCGCGESFMTT-TGSAK 135
           QCGCGESFMTT T SAK
Sbjct: 123 QCGCGESFMTTSTSSAK 139

[Close]
BLAST of Cp4.1LG09g03640 vs. TAIR10
Match: AT2G36260.1 (AT2G36260.1 Iron-sulphur cluster biosynthesis family protein)

HSP 1 Score: 171.4 bits (433), Expect = 3.9e-43
Identity = 82/109 (75.23%), Postives = 98/109 (89.91%), Query Frame = 1 

Query: 21  RRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTLNYADEKGKFDELVEDKD 80
           R+Q+L L++ AAARIRQLLQ +Q+ FLRL V+A+GCNGLSY LNYA EKGKFDE+VE+K 
Sbjct: 2   RKQVLALSDTAAARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKG 61

Query: 81  VKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTT 130
           VKILVDPKA+MHVIGT+MDFVDDKLRSEF+F+NPN+  +CGCGESF TT
Sbjct: 62  VKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109

[Close]
BLAST of Cp4.1LG09g03640 vs. NCBI nr
Match: gi|449434502|ref|XP_004135035.1| (PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 1.5e-60
Identity = 123/132 (93.18%), Postives = 129/132 (97.73%), Query Frame = 1 

Query: 1   MAASSSSFFAAASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLS 60
           MAASSSSFFAAASQK GPAARRQILTLTEAAAARIRQLLQQRQR FLRLGVKARGCNGLS
Sbjct: 1   MAASSSSFFAAASQKAGPAARRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60

Query: 61  YTLNYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120
           YTLNYADEKGKFDELVED++VKIL++PKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC
Sbjct: 61  YTLNYADEKGKFDELVEDQNVKILIEPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120

Query: 121 GCGESFMTTTGS 133
           GCGESFMTT+ +
Sbjct: 121 GCGESFMTTSSA 132

[Close]
BLAST of Cp4.1LG09g03640 vs. NCBI nr
Match: gi|659091836|ref|XP_008446757.1| (PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 1.5e-60
Identity = 123/132 (93.18%), Postives = 128/132 (96.97%), Query Frame = 1 

Query: 1   MAASSSSFFAAASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLS 60
           MAASSSSFFAAASQK GPA RRQILTLTEAAAARIRQLLQQRQR FLRLGVKARGCNGLS
Sbjct: 1   MAASSSSFFAAASQKAGPAVRRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLS 60

Query: 61  YTLNYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120
           YTLNYADEKGKFDELVED++VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC
Sbjct: 61  YTLNYADEKGKFDELVEDQNVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQC 120

Query: 121 GCGESFMTTTGS 133
           GCGESFMTT+ +
Sbjct: 121 GCGESFMTTSSA 132

[Close]
BLAST of Cp4.1LG09g03640 vs. NCBI nr
Match: gi|823218098|ref|XP_012441700.1| (PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Gossypium raimondii])

HSP 1 Score: 223.4 bits (568), Expect = 2.5e-55
Identity = 113/129 (87.60%), Postives = 121/129 (93.80%), Query Frame = 1 

Query: 5   SSSFFAAASQKVG-PAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTL 64
           +S  FA A++K+G PA RRQ+LTLT+AAA+RI  LLQQRQRSFLRLGVKARGCNGLSYTL
Sbjct: 2   ASRLFATAAEKIGQPALRRQVLTLTDAAASRIHHLLQQRQRSFLRLGVKARGCNGLSYTL 61

Query: 65  NYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 124
           NYADEKGKFDELVEDK VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG
Sbjct: 62  NYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 121

Query: 125 ESFMTTTGS 133
           ESFMTTTGS
Sbjct: 122 ESFMTTTGS 130

[Close]
BLAST of Cp4.1LG09g03640 vs. NCBI nr
Match: gi|297740107|emb|CBI30289.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 221.5 bits (563), Expect = 9.4e-55
Identity = 113/132 (85.61%), Postives = 122/132 (92.42%), Query Frame = 1 

Query: 5   SSSFFAAASQKVGPAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTLN 64
           +SSF AAA+ K GP+ RRQ LTLT+AAA+RIR LLQQRQR+FLRLGVKARGCNGLSYTLN
Sbjct: 2   ASSFLAAAAAKAGPSLRRQALTLTDAAASRIRHLLQQRQRTFLRLGVKARGCNGLSYTLN 61

Query: 65  YADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 124
           YAD+KGKFDELVEDK VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE
Sbjct: 62  YADDKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGE 121

Query: 125 SFMTT--TGSAK 135
           SFMTT   G+AK
Sbjct: 122 SFMTTGNPGAAK 133

[Close]
BLAST of Cp4.1LG09g03640 vs. NCBI nr
Match: gi|728833350|gb|KHG12793.1| (hypothetical protein F383_19006 [Gossypium arboreum])

HSP 1 Score: 221.5 bits (563), Expect = 9.4e-55
Identity = 112/129 (86.82%), Postives = 120/129 (93.02%), Query Frame = 1 

Query: 5   SSSFFAAASQKVG-PAARRQILTLTEAAAARIRQLLQQRQRSFLRLGVKARGCNGLSYTL 64
           +S  FA A++K+G PA RRQ+LTLT+AAA+RI  LLQQRQRSFLRLGVKARGCNGLSYTL
Sbjct: 2   ASRLFATAAEKIGQPALRRQVLTLTDAAASRIHHLLQQRQRSFLRLGVKARGCNGLSYTL 61

Query: 65  NYADEKGKFDELVEDKDVKILVDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 124
           NYADEKGKFDELVEDK VKIL+DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG
Sbjct: 62  NYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCG 121

Query: 125 ESFMTTTGS 133
           ESFMTT GS
Sbjct: 122 ESFMTTAGS 130

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g03640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ISAM1_ARATH1.4e-5380.15Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana ... [more]
ISAM3_ARATH7.0e-4275.23Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana ... [more]
ISCA1_DICDI1.5e-2846.56Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideu... [more]
ISA1_YEAST9.8e-2853.27Iron-sulfur assembly protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /... [more]
ISCA1_DROME8.3e-2757.55Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Drosophila melanogaster... [more]
BLAST of Cp4.1LG09g03640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTF0_CUCSA1.0e-6093.18Uncharacterized protein OS=Cucumis sativus GN=Csa_5G614650 PE=4 SV=1[more]
A0A0D2U2J9_GOSRA1.7e-5587.60Uncharacterized protein OS=Gossypium raimondii GN=B456_009G403300 PE=4 SV=1[more]
F6HKK6_VITVI6.6e-5585.61Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03400 PE=4 SV=... [more]
A0A0B0NE47_GOSAR6.6e-5586.82Uncharacterized protein OS=Gossypium arboreum GN=F383_19006 PE=4 SV=1[more]
A0A0B0NEF2_GOSAR5.5e-5486.05Uncharacterized protein OS=Gossypium arboreum GN=F383_15045 PE=4 SV=1[more]
BLAST of Cp4.1LG09g03640 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G16710.37.2e-5376.64 Iron-sulphur cluster biosynthesis family protein[more]
AT2G36260.13.9e-4375.23 Iron-sulphur cluster biosynthesis family protein[more]
BLAST of Cp4.1LG09g03640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434502|ref|XP_004135035.1|1.5e-6093.18PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis sati... [more]
gi|659091836|ref|XP_008446757.1|1.5e-6093.18PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Cucumis melo... [more]
gi|823218098|ref|XP_012441700.1|2.5e-5587.60PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Gossypium ra... [more]
gi|297740107|emb|CBI30289.3|9.4e-5585.61unnamed protein product [Vitis vinifera][more]
gi|728833350|gb|KHG12793.1|9.4e-5586.82hypothetical protein F383_19006 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
Vocabulary: INTERPRO
TermDefinition
IPR017870FeS_cluster_insertion_CS
IPR016092FeS_cluster_insertion
IPR000361FeS_biogenesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
biological_process GO:0015940 pantothenate biosynthetic process
biological_process GO:0097428 protein maturation by iron-sulfur cluster transfer
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0008897 holo-[acyl-carrier-protein] synthase activity
molecular_function GO:0000287 magnesium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g03640.1Cp4.1LG09g03640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000361FeS cluster biogenesisGENE3DG3DSA:2.60.300.12coord: 24..117
score: 1.2
IPR000361FeS cluster biogenesisPFAMPF01521Fe-S_biosyncoord: 25..124
score: 5.3
IPR000361FeS cluster biogenesisunknownSSF89360HesB-like domaincoord: 24..117
score: 1.57
IPR016092FeS cluster insertion proteinTIGRFAMsTIGR00049TIGR00049coord: 25..127
score: 4.9
IPR017870FeS cluster insertion, C-terminal, conserved sitePROSITEPS01152HESBcoord: 109..126
scor
NoneNo IPR availablePANTHERPTHR10072IRON-SULFUR CLUSTER ASSEMBLY PROTEINcoord: 15..128
score: 1.2
NoneNo IPR availablePANTHERPTHR10072:SF51SUBFAMILY NOT NAMEDcoord: 15..128
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g03640Cucsa.282590Cucumber (Gy14) v1cgycpeB0745
Cp4.1LG09g03640CmaCh18G009490Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g03640CmoCh18G009510Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g03640CmoCh04G015070Cucurbita moschata (Rifu)cmocpeB651
Cp4.1LG09g03640Cla020489Watermelon (97103) v1cpewmB031
Cp4.1LG09g03640Csa5G614650Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g03640MELO3C012350Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g03640ClCG05G021780Watermelon (Charleston Gray)cpewcgB045
Cp4.1LG09g03640CSPI05G26340Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g03640Lsi04G001520Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g03640MELO3C012350.2Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g03640CsaV3_5G035380Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g03640Bhi07G000635Wax gourdcpewgoB0055
Cp4.1LG09g03640CsGy5G025800Cucumber (Gy14) v2cgybcpeB581
Cp4.1LG09g03640Carg18993Silver-seed gourdcarcpeB1464
Cp4.1LG09g03640Carg01902Silver-seed gourdcarcpeB1169
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g03640Cp4.1LG01g14330Cucurbita pepo (Zucchini)cpecpeB040
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g03640Cucurbita pepo (Zucchini)cpecpeB038
Cp4.1LG09g03640Cucurbita maxima (Rimu)cmacpeB699
Cp4.1LG09g03640Cucurbita maxima (Rimu)cmacpeB700
Cp4.1LG09g03640Watermelon (Charleston Gray)cpewcgB055
Cp4.1LG09g03640Watermelon (97103) v1cpewmB023
Cp4.1LG09g03640Silver-seed gourdcarcpeB0958