MELO3C004856 (gene) Melon (DHL92) v3.5.1

NameMELO3C004856
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionLate embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative
Locationchr12 : 8660107 .. 8660625 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGCACTACTGCTACTACTACACATGGGATAACAAAACGCACAAGGCTCATTAGACTTGTAGGAAGAAGCTTGTTGGGAGTAATATTCCTTGTTGCTCTTGGAATGATCATATGTTGGCTTGTTGTCATCCCCAAAACCCCACGTCTCATTGTGGAAACTGGCAAAGTCGTAGTCCATAGTTCAACTATTAGTATGCTCAATGCCACCATAGCATTCACTGTCAAAAGCTACAACCCGAACAAAAGAGCCTCCATTCACATGGATTATATGAGGATGATAGTCGATAACATGGGCGTGAGGTTTTCCTCCGCCATCCCCTCCTTCACGCTCACGCCCAGAAACCAAACCGTCTTGTGGTCAGCCGTCCAAGTCAACTTTGAATACCCATTTGGGTACACGGAAGAGATAAATCCAGAACTACAATTCTCAGCTGAAGTCAGGTACACTCATTTAGAGATAATTTTAAAGTTAGACCCAAATTTTTGGACAAAATGGAATATGCTCAACTTTTAA

mRNA sequence

ATGAGAAGCACTACTGCTACTACTACACATGGGATAACAAAACGCACAAGGCTCATTAGACTTGTAGGAAGAAGCTTGTTGGGAGTAATATTCCTTGTTGCTCTTGGAATGATCATATGTTGGCTTGTTGTCATCCCCAAAACCCCACGTCTCATTGTGGAAACTGGCAAAGTCGTAGTCCATAGTTCAACTATTAGTATGCTCAATGCCACCATAGCATTCACTGTCAAAAGCTACAACCCGAACAAAAGAGCCTCCATTCACATGGATTATATGAGGATGATAGTCGATAACATGGGCGTGAGGTTTTCCTCCGCCATCCCCTCCTTCACGCTCACGCCCAGAAACCAAACCGTCTTGTGGTCAGCCGTCCAAGTCAACTTTGAATACCCATTTGGGTACACGGAAGAGATAAATCCAGAACTACAATTCTCAGCTGAAGTCAGGTACACTCATTTAGAGATAATTTTAAAGTTAGACCCAAATTTTTGGACAAAATGGAATATGCTCAACTTTTAA

Coding sequence (CDS)

ATGAGAAGCACTACTGCTACTACTACACATGGGATAACAAAACGCACAAGGCTCATTAGACTTGTAGGAAGAAGCTTGTTGGGAGTAATATTCCTTGTTGCTCTTGGAATGATCATATGTTGGCTTGTTGTCATCCCCAAAACCCCACGTCTCATTGTGGAAACTGGCAAAGTCGTAGTCCATAGTTCAACTATTAGTATGCTCAATGCCACCATAGCATTCACTGTCAAAAGCTACAACCCGAACAAAAGAGCCTCCATTCACATGGATTATATGAGGATGATAGTCGATAACATGGGCGTGAGGTTTTCCTCCGCCATCCCCTCCTTCACGCTCACGCCCAGAAACCAAACCGTCTTGTGGTCAGCCGTCCAAGTCAACTTTGAATACCCATTTGGGTACACGGAAGAGATAAATCCAGAACTACAATTCTCAGCTGAAGTCAGGTACACTCATTTAGAGATAATTTTAAAGTTAGACCCAAATTTTTGGACAAAATGGAATATGCTCAACTTTTAA

Protein sequence

MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYPFGYTEEINPELQFSAEVRYTHLEIILKLDPNFWTKWNMLNF*
BLAST of MELO3C004856 vs. TrEMBL
Match: A0A0A0LY09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.3e-73
Identity = 142/151 (94.04%), Postives = 147/151 (97.35%), Query Frame = 1

Query: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60
           MRSTT TTTHGITKRTRLIR++GRSLLGVIFLVALGMIICWLVVIPK+PRLIVETGKV+ 
Sbjct: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVRYT 152
            SAVQVNFEYPFGYTEEINPELQFSAEV Y+
Sbjct: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVSYS 151

BLAST of MELO3C004856 vs. TrEMBL
Match: A0A0A0LVK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.1e-49
Identity = 96/139 (69.06%), Postives = 115/139 (82.73%), Query Frame = 1

Query: 13  TKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLNATI 72
           TK+TR+IR++GRSLL VIFLV L M+ICWLVV PK PR+ VETG+V+ H+ST +MLNATI
Sbjct: 25  TKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKNPRIFVETGRVIAHNSTHNMLNATI 84

Query: 73  AFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYPF 132
            FTVK YNPNKRAS+H+  MRMIV +MG  FSS IP+F  TP NQTVL  AV+VNF+YPF
Sbjct: 85  VFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIPTFMQTPGNQTVLSPAVEVNFDYPF 144

Query: 133 GYTEEINPELQFSAEVRYT 152
           G+ EEINPEL FSAE+ Y+
Sbjct: 145 GHQEEINPELHFSAEISYS 163

BLAST of MELO3C004856 vs. TrEMBL
Match: A0A0A0LSV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.7e-42
Identity = 90/147 (61.22%), Postives = 113/147 (76.87%), Query Frame = 1

Query: 10  HGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLN 69
           HG  KRTR++R+ GR+LLG++ LVA+ MIICWL+V P+ P +IVETG+V+ HS T   LN
Sbjct: 28  HGTAKRTRVLRITGRTLLGLMILVAIAMIICWLIVFPRNPDIIVETGQVIPHSLTDRKLN 87

Query: 70  ATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFE 129
           ATIAFTV SYNPNK+ASI MD MRMIV +MG+ F S IPSFT  P+N+TVL S +Q NF 
Sbjct: 88  ATIAFTVTSYNPNKKASIRMDSMRMIVSDMGLSFWSDIPSFTQPPKNKTVLTSTIQGNFI 147

Query: 130 YPFGYTEE------INPELQFSAEVRY 151
           YPFG+ +E      I+PEL+FSA+V Y
Sbjct: 148 YPFGHMKELMKLEGISPELRFSAKVSY 174

BLAST of MELO3C004856 vs. TrEMBL
Match: A0A0A0LSU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 85/142 (59.86%), Postives = 109/142 (76.76%), Query Frame = 1

Query: 13  TKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLNATI 72
           TKRTR+IR++GRSLL VI  +++ +I CWLVV P+TPRL+VET KV  H ST   LNATI
Sbjct: 30  TKRTRIIRIIGRSLLSVIIFLSVAIITCWLVVFPRTPRLMVETSKVTAHGSTNRHLNATI 89

Query: 73  AFTVKSYNPNKRASIHMDYMRMIV-DNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYP 132
            F +KSYNPNK+ASIHMD ++MIV D MG+ F S IP+FTL PRN+ V  S V+VNF YP
Sbjct: 90  VFYIKSYNPNKKASIHMDSVKMIVSDYMGLPFHSTIPTFTLMPRNEMVFNSTVRVNFMYP 149

Query: 133 FG---YTEEINPELQFSAEVRY 151
           FG   +++ ++ EL+FSA+V Y
Sbjct: 150 FGRPVHSDWVHLELRFSAQVSY 171

BLAST of MELO3C004856 vs. TrEMBL
Match: A0A0A0LV68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.9e-36
Identity = 89/176 (50.57%), Postives = 114/176 (64.77%), Query Frame = 1

Query: 1   MRSTTATTT----------------------HGITKRTRLIRLVGRSLLGVIFLVALGMI 60
           MRS+T TTT                      HGI KRTR+IR++GRSLL  I L+ + ++
Sbjct: 1   MRSSTTTTTTTQGEASSSSIIRAPKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAIL 60

Query: 61  ICWLVVIPKTPRLIVETGKVVVHSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDN 120
            CW VVIP+TP+L+VE+G+V  + STI  LNATI F ++SYNPNKRASI++D M+M V N
Sbjct: 61  TCWFVVIPRTPQLMVESGQVTGYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKN 120

Query: 121 -MGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYPFG---YTEEINPELQFSAEVRY 151
            M V F S IP+FT+TPRN TVL   + VN  YPFG   +   I+ EL FSA+V Y
Sbjct: 121 YMSVPFHSDIPNFTMTPRNMTVLTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSY 176

BLAST of MELO3C004856 vs. TAIR10
Match: AT3G11660.1 (AT3G11660.1 NDR1/HIN1-like 1)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 31/118 (26.27%), Postives = 59/118 (50.00%), Query Frame = 1

Query: 10  HGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVV---VHSSTIS 69
           HG ++R +LIR +  S++ V+F++ L +++ W ++ P  PR I++   V    V  +  +
Sbjct: 7   HGHSRR-KLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSGNPPN 66

Query: 70  MLNATIAFTVKSYNPNKRASIHMDYMRMIVD--NMGVRFSSAIPSFTLTPRNQTVLWS 123
           +L +    T+ S NPN +  I+ D + +     +  + F ++IP  T        +WS
Sbjct: 67  LLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPP-TYQGHKDVDIWS 122

BLAST of MELO3C004856 vs. TAIR10
Match: AT4G01410.1 (AT4G01410.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 48.1 bits (113), Expect = 6.2e-06
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 1

Query: 24  RSLLGVIF--LVALGMI--ICWLVVIPKTPRLIVETGKVV-VHSSTISMLNATIAFTVKS 83
           R++ G IF  LV LG+I  I WLV  P  PRL V    +  ++ +   +++ ++ F+V +
Sbjct: 42  RAICGAIFTILVILGIIALILWLVYRPHKPRLTVVGAAIYDLNFTAPPLISTSVQFSVLA 101

Query: 84  YNPNKRASIHMDYMRMIV 97
            NPN+R SIH D + M V
Sbjct: 102 RNPNRRVSIHYDKLSMYV 119

BLAST of MELO3C004856 vs. NCBI nr
Match: gi|659071875|ref|XP_008462348.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 4.9e-77
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 1

Query: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60
           MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV
Sbjct: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVRYT 152
           WSAVQVNFEYPFGYTEEINPELQFSAEV Y+
Sbjct: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVSYS 151

BLAST of MELO3C004856 vs. NCBI nr
Match: gi|778659283|ref|XP_011654126.1| (PREDICTED: protein YLS9-like isoform X1 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 1.9e-73
Identity = 143/151 (94.70%), Postives = 147/151 (97.35%), Query Frame = 1

Query: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60
           MRSTT TTTHGITKRTRLIR++GRSLLGVIFLVALGMIICWLVVIPK+PRLIVETGKV+ 
Sbjct: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVRYT 152
            SAVQVNFEYPFGYTEEINPELQFSAEVR T
Sbjct: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVRVT 151

BLAST of MELO3C004856 vs. NCBI nr
Match: gi|778659286|ref|XP_011654134.1| (PREDICTED: protein YLS9-like isoform X2 [Cucumis sativus])

HSP 1 Score: 283.1 bits (723), Expect = 3.3e-73
Identity = 142/151 (94.04%), Postives = 147/151 (97.35%), Query Frame = 1

Query: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60
           MRSTT TTTHGITKRTRLIR++GRSLLGVIFLVALGMIICWLVVIPK+PRLIVETGKV+ 
Sbjct: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVRYT 152
            SAVQVNFEYPFGYTEEINPELQFSAEV Y+
Sbjct: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVSYS 151

BLAST of MELO3C004856 vs. NCBI nr
Match: gi|659071873|ref|XP_008462337.1| (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 7.3e-49
Identity = 97/139 (69.78%), Postives = 114/139 (82.01%), Query Frame = 1

Query: 13  TKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLNATI 72
           TK+TR+IR++GR LL VIFLV L M+ICWLVV PK PR +VETGKV+ H+ST +MLNATI
Sbjct: 25  TKKTRIIRIIGRCLLSVIFLVGLAMVICWLVVFPKNPRFVVETGKVIAHNSTHNMLNATI 84

Query: 73  AFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYPF 132
           AFTVK YNPNKRASIH+  MRMI+ +MG  FSSA+P F  TP NQTVL  AV VNF+YPF
Sbjct: 85  AFTVKCYNPNKRASIHLHSMRMIITSMGQAFSSAMPMFMQTPGNQTVLSPAVDVNFDYPF 144

Query: 133 GYTEEINPELQFSAEVRYT 152
           G+ EEINPEL FSAE+ Y+
Sbjct: 145 GHREEINPELHFSAEISYS 163

BLAST of MELO3C004856 vs. NCBI nr
Match: gi|778664980|ref|XP_011648454.1| (PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 7.3e-49
Identity = 96/139 (69.06%), Postives = 115/139 (82.73%), Query Frame = 1

Query: 13  TKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLNATI 72
           TK+TR+IR++GRSLL VIFLV L M+ICWLVV PK PR+ VETG+V+ H+ST +MLNATI
Sbjct: 25  TKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKNPRIFVETGRVIAHNSTHNMLNATI 84

Query: 73  AFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYPF 132
            FTVK YNPNKRAS+H+  MRMIV +MG  FSS IP+F  TP NQTVL  AV+VNF+YPF
Sbjct: 85  VFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIPTFMQTPGNQTVLSPAVEVNFDYPF 144

Query: 133 GYTEEINPELQFSAEVRYT 152
           G+ EEINPEL FSAE+ Y+
Sbjct: 145 GHQEEINPELHFSAEISYS 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LY09_CUCSA2.3e-7394.04Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1[more]
A0A0A0LVK9_CUCSA5.1e-4969.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1[more]
A0A0A0LSV0_CUCSA2.7e-4261.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1[more]
A0A0A0LSU5_CUCSA1.4e-3859.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1[more]
A0A0A0LV68_CUCSA4.9e-3650.57Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G11660.12.1e-0626.27 NDR1/HIN1-like 1[more]
AT4G01410.16.2e-0638.46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
Match NameE-valueIdentityDescription
gi|659071875|ref|XP_008462348.1|4.9e-7798.68PREDICTED: protein YLS9-like [Cucumis melo][more]
gi|778659283|ref|XP_011654126.1|1.9e-7394.70PREDICTED: protein YLS9-like isoform X1 [Cucumis sativus][more]
gi|778659286|ref|XP_011654134.1|3.3e-7394.04PREDICTED: protein YLS9-like isoform X2 [Cucumis sativus][more]
gi|659071873|ref|XP_008462337.1|7.3e-4969.78PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo][more]
gi|778664980|ref|XP_011648454.1|7.3e-4969.06PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004856T1MELO3C004856T1mRNA