CmaCh13G002650 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G002650
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative
Location	Cma_Chr13 : 2178820 .. 2179696 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAGAACACAAACATTTGTTGAAGAACATGAGGAACAATACACAAGGAGAAGCCTCATCATCATCAACCTCCATCATTGAGGCACCAAAACCAAGCTACTATGCACAGCAACATGGGACAGCAAAACGCACCAAGCTCATGAGAATCATAGGACGAAGCTTGTTGGCTGTCATGTTCCTTGTCGGTCTTGCTATTGTCATTTGTTGGCTTGTTGTCTTCCCCAAAACCCCAAATCTTATATTGGAAAATGGCCATGTAACACCCCATAGCTTAACTGATAGAAAGCTCAATGCCTCCATATCTTTCACCATCAAAAGCTATAACCCTAACAAAAGAGCCTCCATTCATATGGATTCTATGAAGATGACACTTGATGATATGGGTCAGACGTTTATCACCACGATCCCCACGTTCACGCAACTGCCCGGAAACCAAACCTTCTTGACTCCCACCGTCGAAGTCAACTTCATATACCCTTTCGGGCAAATGAAAGATTTGATGCTATCAAATGGGTTGAATCCCGAACTTCACTTCTCGGCTCATGTCAGGTACAAACATTTAACTTTTAAGATAGATATATAACATATCAGTATATCATCAAATTTAGCTTCAATCTGATTTTTGTCTCGCTCTATTTCTATCAGTTACATTGTCGAGAAATGGGCATCAAAACGTCGGTCGCTAGAGATCTATTGTGATCGAGTCAGGCTTAAGATCAATGGTTCAACACCTTTCGATAATACAAAATGCAAAGTGGATCTTTGAGATTTGATCCGAGTTTGTTCTTAGTTGCATAATCGCCAAGATTTGTAACTTACAAGTTTGATTTTCTTTTTCTTTTTTGAATTTAATTGTTTCTCTAGGAATATTCTTGC

mRNA sequence

ACAAAGAACACAAACATTTGTTGAAGAACATGAGGAACAATACACAAGGAGAAGCCTCATCATCATCAACCTCCATCATTGAGGCACCAAAACCAAGCTACTATGCACAGCAACATGGGACAGCAAAACGCACCAAGCTCATGAGAATCATAGGACGAAGCTTGTTGGCTGTCATGTTCCTTGTCGGTCTTGCTATTGTCATTTGTTGGCTTGTTGTCTTCCCCAAAACCCCAAATCTTATATTGGAAAATGGCCATGTAACACCCCATAGCTTAACTGATAGAAAGCTCAATGCCTCCATATCTTTCACCATCAAAAGCTATAACCCTAACAAAAGAGCCTCCATTCATATGGATTCTATGAAGATGACACTTGATGATATGGGTCAGACGTTTATCACCACGATCCCCACGTTCACGCAACTGCCCGGAAACCAAACCTTCTTGACTCCCACCGTCGAAGTCAACTTCATATACCCTTTCGGGCAAATGAAAGATTTGATGCTATCAAATGGGTTGAATCCCGAACTTCACTTCTCGGCTCATGTCAGTTACATTGTCGAGAAATGGGCATCAAAACGTCGGTCGCTAGAGATCTATTGTGATCGAGTCAGGCTTAAGATCAATGGTTCAACACCTTTCGATAATACAAAATGCAAAGTGGATCTTTGAGATTTGATCCGAGTTTGTTCTTAGTTGCATAATCGCCAAGATTTGTAACTTACAAGTTTGATTTTCTTTTTCTTTTTTGAATTTAATTGTTTCTCTAGGAATATTCTTGC

Coding sequence (CDS)

ATGAGGAACAATACACAAGGAGAAGCCTCATCATCATCAACCTCCATCATTGAGGCACCAAAACCAAGCTACTATGCACAGCAACATGGGACAGCAAAACGCACCAAGCTCATGAGAATCATAGGACGAAGCTTGTTGGCTGTCATGTTCCTTGTCGGTCTTGCTATTGTCATTTGTTGGCTTGTTGTCTTCCCCAAAACCCCAAATCTTATATTGGAAAATGGCCATGTAACACCCCATAGCTTAACTGATAGAAAGCTCAATGCCTCCATATCTTTCACCATCAAAAGCTATAACCCTAACAAAAGAGCCTCCATTCATATGGATTCTATGAAGATGACACTTGATGATATGGGTCAGACGTTTATCACCACGATCCCCACGTTCACGCAACTGCCCGGAAACCAAACCTTCTTGACTCCCACCGTCGAAGTCAACTTCATATACCCTTTCGGGCAAATGAAAGATTTGATGCTATCAAATGGGTTGAATCCCGAACTTCACTTCTCGGCTCATGTCAGTTACATTGTCGAGAAATGGGCATCAAAACGTCGGTCGCTAGAGATCTATTGTGATCGAGTCAGGCTTAAGATCAATGGTTCAACACCTTTCGATAATACAAAATGCAAAGTGGATCTTTGA

Protein sequence

MRNNTQGEASSSSTSIIEAPKPSYYAQQHGTAKRTKLMRIIGRSLLAVMFLVGLAIVICWLVVFPKTPNLILENGHVTPHSLTDRKLNASISFTIKSYNPNKRASIHMDSMKMTLDDMGQTFITTIPTFTQLPGNQTFLTPTVEVNFIYPFGQMKDLMLSNGLNPELHFSAHVSYIVEKWASKRRSLEIYCDRVRLKINGSTPFDNTKCKVDL

Homology

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BLAST of CmaCh13G002650 vs. Swiss-Prot
Match: Y1816_ARATH (Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-10
Identity = 55/179 (30.73%), Postives = 85/179 (47.49%), Query Frame = 1


Query: 44  SLLAVMFLVGLAIVICWLVVFPKTPNLILENGHVTPHSL--TDRKLNASISFTIKSYNPN 103
           +L+ +  LVGLAI+I +L + PK     +E   V   ++   D  +NA  S+ IKSYNP 
Sbjct: 43  ALVLLGLLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPE 102

Query: 104 KRASIHMDSMKMTLDDMGQTFI-TTIPTFTQLPGNQTFL-TPTVEVNFIYPFGQMKDLML 163
           K  S+   SM+++     Q+     I  F Q P N+T + T  V  N        +DL  
Sbjct: 103 KHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRA 162

Query: 164 SNG---LNPELHFSAHVSYIVEKWASKRRSLEIYCDRVRLKINGST--PFDNTKCKVDL 214
                 +  E++ +A VSY    + S+RR+L+  C  V + +  S+   F    CK  L
Sbjct: 163 EKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTSSSLDGFQRVLCKTRL 221

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BLAST of CmaCh13G002650 vs. TrEMBL
Match: A0A0A0LSV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 5.3e-64
Identity = 123/211 (58.29%), Postives = 160/211 (75.83%), Query Frame = 1


Query: 3   NNTQGEASSSSTSIIEAPKPSYYAQQHGTAKRTKLMRIIGRSLLAVMFLVGLAIVICWLV 62
           N   GE     +S   + K   Y  +HGTAKRT+++RI GR+LL +M LV +A++ICWL+
Sbjct: 4   NGKAGEPPPPPSS--SSSKEMSYVIKHGTAKRTRVLRITGRTLLGLMILVAIAMIICWLI 63

Query: 63  VFPKTPNLILENGHVTPHSLTDRKLNASISFTIKSYNPNKRASIHMDSMKMTLDDMGQTF 122
           VFP+ P++I+E G V PHSLTDRKLNA+I+FT+ SYNPNK+ASI MDSM+M + DMG +F
Sbjct: 64  VFPRNPDIIVETGQVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVSDMGLSF 123

Query: 123 ITTIPTFTQLPGNQTFLTPTVEVNFIYPFGQMKDLMLSNGLNPELHFSAHVSYIVEKWAS 182
            + IP+FTQ P N+T LT T++ NFIYPFG MK+LM   G++PEL FSA VSYI+E+W S
Sbjct: 124 WSDIPSFTQPPKNKTVLTSTIQGNFIYPFGHMKELMKLEGISPELRFSAKVSYIMERWTS 183

Query: 183 KRRSLEIYCDRVRLKINGSTPFDNTKCKVDL 214
           + R +E+YCD +RLK N ST FDN KCKVDL
Sbjct: 184 RDRLVEVYCDSLRLKFNDSTVFDNKKCKVDL 212

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BLAST of CmaCh13G002650 vs. TrEMBL
Match: A0A0A0LVK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.1e-56
Identity = 119/215 (55.35%), Postives = 151/215 (70.23%), Query Frame = 1


Query: 1   MRNNT--QGEASSSSTSIIEAPKPSYYAQQHGTAKRTKLMRIIGRSLLAVMFLVGLAIVI 60
           MR++T  +GEASSS  S            Q+ T K+T+++RIIGRSLL+V+FLVGLA+VI
Sbjct: 1   MRSSTTAKGEASSSKKSS---------KGQNETTKKTRIIRIIGRSLLSVIFLVGLAMVI 60

Query: 61  CWLVVFPKTPNLILENGHVTPHSLTDRKLNASISFTIKSYNPNKRASIHMDSMKMTLDDM 120
           CWLVVFPK P + +E G V  H+ T   LNA+I FT+K YNPNKRAS+H+ SM+M +  M
Sbjct: 61  CWLVVFPKNPRIFVETGRVIAHNSTHNMLNATIVFTVKCYNPNKRASVHLHSMRMIVTSM 120

Query: 121 GQTFITTIPTFTQLPGNQTFLTPTVEVNFIYPFGQMKDLMLSNGLNPELHFSAHVSYIVE 180
           GQ F + IPTF Q PGNQT L+P VEVNF YPFG  ++      +NPELHFSA +SY VE
Sbjct: 121 GQAFSSVIPTFMQTPGNQTVLSPAVEVNFDYPFGHQEE------INPELHFSAEISYSVE 180

Query: 181 KWASKRRSLEIYCDRVRLKINGSTPFDNTKCKVDL 214
            W S+ R L IYC+ + L+IN +  F+NTKC VDL
Sbjct: 181 HWTSRPRLLLIYCNNLLLRINDTRTFENTKCNVDL 200

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BLAST of CmaCh13G002650 vs. TrEMBL
Match: A0A0A0LY09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.0e-56
Identity = 112/184 (60.87%), Postives = 138/184 (75.00%), Query Frame = 1


Query: 29  HGTAKRTKLMRIIGRSLLAVMFLVGLAIVICWLVVFPKTPNLILENGHVTPHSLTDRKLN 88
           HG  KRT+L+R++GRSLL V+FLV L ++ICWLVV PK+P LI+E G V  HS T   LN
Sbjct: 10  HGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIAHSSTISMLN 69

Query: 89  ASISFTIKSYNPNKRASIHMDSMKMTLDDMGQTFITTIPTFTQLPGNQTFLTPTVEVNFI 148
           A+I+FT+KSYNPNKRASIHMD M+M +D+MG  F + IP+FT  P NQT L+  V+VNF 
Sbjct: 70  ATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLSSAVQVNFE 129

Query: 149 YPFGQMKDLMLSNGLNPELHFSAHVSYIVEKWASKRRSLEIYCDRVRLKINGSTPFDNTK 208
           YPFG  ++      +NPEL FSA VSY ++KW SK R LEIYC+ + LKIN ST FDNTK
Sbjct: 130 YPFGYTEE------INPELQFSAEVSYSIKKWMSKPRLLEIYCNHILLKINDSTAFDNTK 187

Query: 209 CKVD 213
           CKVD
Sbjct: 190 CKVD 187

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BLAST of CmaCh13G002650 vs. TrEMBL
Match: A0A0A0LSU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 124/211 (58.77%), Postives = 156/211 (73.93%), Query Frame = 1


Query: 5   TQGEASSSSTSIIEAPKPSYYAQQHGTAKRTKLMRIIGRSLLAVMFLVGLAIVICWLVVF 64
           TQGE +SSS  IIEAPK S+  +Q  T KRT+++RIIGRSLL+V+  + +AI+ CWLVVF
Sbjct: 6   TQGEGASSS--IIEAPKRSF-CRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLVVF 65

Query: 65  PKTPNLILENGHVTPHSLTDRKLNASISFTIKSYNPNKRASIHMDSMKMTLDD-MGQTFI 124
           P+TP L++E   VT H  T+R LNA+I F IKSYNPNK+ASIHMDS+KM + D MG  F 
Sbjct: 66  PRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLPFH 125

Query: 125 TTIPTFTQLPGNQTFLTPTVEVNFIYPFGQMKDLMLSNGLNPELHFSAHVSYIVEKWASK 184
           +TIPTFT +P N+     TV VNF+YPFG+    + S+ ++ EL FSA VSYIV +W SK
Sbjct: 126 STIPTFTLMPRNEMVFNSTVRVNFMYPFGRP---VHSDWVHLELRFSAQVSYIVNRWRSK 185

Query: 185 RRSLEIYCDRVRLKINGSTP-FDNTKCKVDL 214
            R LEIYCD + L+IN STP FD TKC+VDL
Sbjct: 186 PRLLEIYCDHLWLRINDSTPNFDKTKCRVDL 210

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BLAST of CmaCh13G002650 vs. TrEMBL
Match: A0A0A0LV68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-52
Identity = 121/211 (57.35%), Postives = 152/211 (72.04%), Query Frame = 1


Query: 5   TQGEASSSSTSIIEAPKPSYYAQQHGTAKRTKLMRIIGRSLLAVMFLVGLAIVICWLVVF 64
           TQGEASSSS  II APK   Y +QHG AKRT+++RIIGRSLL  + L+G+AI+ CW VV 
Sbjct: 11  TQGEASSSS--IIRAPKRGAY-RQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVI 70

Query: 65  PKTPNLILENGHVTPHSLTDRKLNASISFTIKSYNPNKRASIHMDSMKMTLDD-MGQTFI 124
           P+TP L++E+G VT +  T RKLNA+I F I+SYNPNKRASI++DSMKMT+ + M   F 
Sbjct: 71  PRTPQLMVESGQVTGYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFH 130

Query: 125 TTIPTFTQLPGNQTFLTPTVEVNFIYPFGQMKDLMLSNGLNPELHFSAHVSYIVEKWASK 184
           + IP FT  P N T LTPT+ VN IYPFG+    + +  ++ EL FSA VSYI  +WASK
Sbjct: 131 SDIPNFTMTPRNMTVLTPTILVNCIYPFGRP---LHAGWIHIELSFSAKVSYIFNRWASK 190

Query: 185 RRSLEIYCDRVRLKINGSTP-FDNTKCKVDL 214
            R +EIYC+    KI+ S P FDN KC+VDL
Sbjct: 191 PRLMEIYCNHFWFKIDDSMPNFDNIKCQVDL 215

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BLAST of CmaCh13G002650 vs. TAIR10
Match: AT1G08160.1 (AT1G08160.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-11
Identity = 55/179 (30.73%), Postives = 85/179 (47.49%), Query Frame = 1


Query: 44  SLLAVMFLVGLAIVICWLVVFPKTPNLILENGHVTPHSL--TDRKLNASISFTIKSYNPN 103
           +L+ +  LVGLAI+I +L + PK     +E   V   ++   D  +NA  S+ IKSYNP 
Sbjct: 43  ALVLLGLLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPE 102

Query: 104 KRASIHMDSMKMTLDDMGQTFI-TTIPTFTQLPGNQTFL-TPTVEVNFIYPFGQMKDLML 163
           K  S+   SM+++     Q+     I  F Q P N+T + T  V  N        +DL  
Sbjct: 103 KHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRA 162

Query: 164 SNG---LNPELHFSAHVSYIVEKWASKRRSLEIYCDRVRLKINGST--PFDNTKCKVDL 214
                 +  E++ +A VSY    + S+RR+L+  C  V + +  S+   F    CK  L
Sbjct: 163 EKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTSSSLDGFQRVLCKTRL 221

[Close]

BLAST of CmaCh13G002650 vs. TAIR10
Match: AT3G11660.1 (AT3G11660.1 NDR1/HIN1-like 1)

HSP 1 Score: 48.1 bits (113), Expect = 7.6e-06
Identity = 32/106 (30.19%), Postives = 58/106 (54.72%), Query Frame = 1


Query: 27  QQHGTAKRTKLMRIIGRSLLAVMFLVGLAIVICWLVVFPKTPNLILENGHVTPHSLTDRK 86
           + HG ++R KL+R I  S++ V+F++ L I++ W ++ P  P  IL++  V   +++   
Sbjct: 5   ENHGHSRR-KLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSGNP 64

Query: 87  ---LNASISFTIKSYNPNKRASIHMDSMKM--TLDDMGQTFITTIP 128
              L ++   T+ S NPN +  I+ D + +  T      TF T+IP
Sbjct: 65  PNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIP 109

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BLAST of CmaCh13G002650 vs. NCBI nr
Match: gi|659071871|ref|XP_008462326.1| (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 3.1e-65
Identity = 125/209 (59.81%), Postives = 161/209 (77.03%), Query Frame = 1


Query: 5   TQGEASSSSTSIIEAPKPSYYAQQHGTAKRTKLMRIIGRSLLAVMFLVGLAIVICWLVVF 64
           TQGE SSSS   I       Y ++HG AKRT+++RI GR+LL +M LV +A++ICWL+VF
Sbjct: 6   TQGEPSSSSAKEIS------YVEKHGAAKRTRVLRITGRTLLGLMILVAIAMIICWLIVF 65

Query: 65  PKTPNLILENGHVTPHSLTDRKLNASISFTIKSYNPNKRASIHMDSMKMTLDDMGQTFIT 124
           P+ P+LI+E G V PHSLTDRKLNA+I+FT+ SYNPNK+ASI MDSM+M + DMG +F +
Sbjct: 66  PRNPDLIVETGKVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVTDMGLSFWS 125

Query: 125 TIPTFTQLPGNQTFLTPTVEVNFIYPFGQMKDLMLSNGLNPELHFSAHVSYIVEKWASKR 184
            IP+FTQ P N+T L  T++ NFIYPFG MK+L+   G++P+L FSA VSYI+E+W S+ 
Sbjct: 126 DIPSFTQPPKNKTVLNSTIQGNFIYPFGHMKELVKLEGISPDLRFSAKVSYIMERWTSRG 185

Query: 185 RSLEIYCDRVRLKINGSTPFDNTKCKVDL 214
           R LE+YCD +RLK N ST FDN KCKVDL
Sbjct: 186 RLLEVYCDSLRLKFNDSTVFDNKKCKVDL 208

[Close]

BLAST of CmaCh13G002650 vs. NCBI nr
Match: gi|449443378|ref|XP_004139454.1| (PREDICTED: uncharacterized protein LOC101218532 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 7.6e-64
Identity = 123/211 (58.29%), Postives = 160/211 (75.83%), Query Frame = 1


Query: 3   NNTQGEASSSSTSIIEAPKPSYYAQQHGTAKRTKLMRIIGRSLLAVMFLVGLAIVICWLV 62
           N   GE     +S   + K   Y  +HGTAKRT+++RI GR+LL +M LV +A++ICWL+
Sbjct: 4   NGKAGEPPPPPSS--SSSKEMSYVIKHGTAKRTRVLRITGRTLLGLMILVAIAMIICWLI 63

Query: 63  VFPKTPNLILENGHVTPHSLTDRKLNASISFTIKSYNPNKRASIHMDSMKMTLDDMGQTF 122
           VFP+ P++I+E G V PHSLTDRKLNA+I+FT+ SYNPNK+ASI MDSM+M + DMG +F
Sbjct: 64  VFPRNPDIIVETGQVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVSDMGLSF 123

Query: 123 ITTIPTFTQLPGNQTFLTPTVEVNFIYPFGQMKDLMLSNGLNPELHFSAHVSYIVEKWAS 182
            + IP+FTQ P N+T LT T++ NFIYPFG MK+LM   G++PEL FSA VSYI+E+W S
Sbjct: 124 WSDIPSFTQPPKNKTVLTSTIQGNFIYPFGHMKELMKLEGISPELRFSAKVSYIMERWTS 183

Query: 183 KRRSLEIYCDRVRLKINGSTPFDNTKCKVDL 214
           + R +E+YCD +RLK N ST FDN KCKVDL
Sbjct: 184 RDRLVEVYCDSLRLKFNDSTVFDNKKCKVDL 212

[Close]

BLAST of CmaCh13G002650 vs. NCBI nr
Match: gi|659071883|ref|XP_008462391.1| (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 2.1e-58
Identity = 127/215 (59.07%), Postives = 158/215 (73.49%), Query Frame = 1


Query: 1   MRNNTQGEASSSSTSIIEAPKPSYYAQQHGTAKRTKLMRIIGRSLLAVMFLVGLAIVICW 60
           MR+ T  E  +SS SI+EAPK S+Y Q+H T KRT+++RIIGRSLL V+  + +AI+ CW
Sbjct: 1   MRSTTTQEEEASS-SIVEAPKRSFYRQRHETTKRTRIIRIIGRSLLCVIIFLSVAIITCW 60

Query: 61  LVVFPKTPNLILENGHVTPHSLTDRKLNASISFTIKSYNPNKRASIHMDSMKMTLDD-MG 120
           LVVFP+TP L++E   VT H  T+RKLNA+I F IKSYNPNK+ASI+MDSMKM + D MG
Sbjct: 61  LVVFPRTPRLMVETSKVTAHGSTNRKLNATIVFYIKSYNPNKKASIYMDSMKMIVKDYMG 120

Query: 121 QTFITTIPTFTQLPGNQTFLTPTVEVNFIYPFGQMKDLMLSNGLNPELHFSAHVSYIVEK 180
             F + IPTFT +P N+T    TV VN IYPFG+    + S+ ++ EL FSA VSYIV +
Sbjct: 121 LPFHSAIPTFTLMPRNETVFNSTVRVNLIYPFGRP---VHSDWIHLELRFSAKVSYIVNR 180

Query: 181 WASKRRSLEIYCDRVRLKINGSTP-FDNTKCKVDL 214
           W SK R LEIYCD + LKIN STP FD TKCKVD+
Sbjct: 181 WKSKPRLLEIYCDHLWLKINDSTPNFDRTKCKVDI 211

[Close]

BLAST of CmaCh13G002650 vs. NCBI nr
Match: gi|659071875|ref|XP_008462348.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 6.9e-57
Identity = 116/185 (62.70%), Postives = 138/185 (74.59%), Query Frame = 1


Query: 29  HGTAKRTKLMRIIGRSLLAVMFLVGLAIVICWLVVFPKTPNLILENGHVTPHSLTDRKLN 88
           HG  KRT+L+R++GRSLL V+FLV L ++ICWLVV PKTP LI+E G V  HS T   LN
Sbjct: 10  HGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLN 69

Query: 89  ASISFTIKSYNPNKRASIHMDSMKMTLDDMGQTFITTIPTFTQLPGNQTFLTPTVEVNFI 148
           A+I+FT+KSYNPNKRASIHMD M+M +D+MG  F + IP+FT  P NQT L   V+VNF 
Sbjct: 70  ATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFE 129

Query: 149 YPFGQMKDLMLSNGLNPELHFSAHVSYIVEKWASKRRSLEIYCDRVRLKINGSTPFDNTK 208
           YPFG  ++      +NPEL FSA VSY VEKW SK R LEIYC+ + LKIN ST FDNTK
Sbjct: 130 YPFGYTEE------INPELQFSAEVSYSVEKWMSKPRLLEIYCNHLLLKINDSTTFDNTK 188

Query: 209 CKVDL 214
           CKVDL
Sbjct: 190 CKVDL 188

[Close]

BLAST of CmaCh13G002650 vs. NCBI nr
Match: gi|778664980|ref|XP_011648454.1| (PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 4.4e-56
Identity = 119/215 (55.35%), Postives = 151/215 (70.23%), Query Frame = 1


Query: 1   MRNNT--QGEASSSSTSIIEAPKPSYYAQQHGTAKRTKLMRIIGRSLLAVMFLVGLAIVI 60
           MR++T  +GEASSS  S            Q+ T K+T+++RIIGRSLL+V+FLVGLA+VI
Sbjct: 1   MRSSTTAKGEASSSKKSS---------KGQNETTKKTRIIRIIGRSLLSVIFLVGLAMVI 60

Query: 61  CWLVVFPKTPNLILENGHVTPHSLTDRKLNASISFTIKSYNPNKRASIHMDSMKMTLDDM 120
           CWLVVFPK P + +E G V  H+ T   LNA+I FT+K YNPNKRAS+H+ SM+M +  M
Sbjct: 61  CWLVVFPKNPRIFVETGRVIAHNSTHNMLNATIVFTVKCYNPNKRASVHLHSMRMIVTSM 120

Query: 121 GQTFITTIPTFTQLPGNQTFLTPTVEVNFIYPFGQMKDLMLSNGLNPELHFSAHVSYIVE 180
           GQ F + IPTF Q PGNQT L+P VEVNF YPFG  ++      +NPELHFSA +SY VE
Sbjct: 121 GQAFSSVIPTFMQTPGNQTVLSPAVEVNFDYPFGHQEE------INPELHFSAEISYSVE 180

Query: 181 KWASKRRSLEIYCDRVRLKINGSTPFDNTKCKVDL 214
            W S+ R L IYC+ + L+IN +  F+NTKC VDL
Sbjct: 181 HWTSRPRLLLIYCNNLLLRINDTRTFENTKCNVDL 200

The following BLAST results are available for this feature:

BLAST of CmaCh13G002650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1816_ARATH	2.8e-10	30.73	Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1	[more]

BLAST of CmaCh13G002650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSV0_CUCSA	5.3e-64	58.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1	[more]
A0A0A0LVK9_CUCSA	3.1e-56	55.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1	[more]
A0A0A0LY09_CUCSA	4.0e-56	60.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1	[more]
A0A0A0LSU5_CUCSA	1.2e-55	58.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1	[more]
A0A0A0LV68_CUCSA	1.6e-52	57.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1	[more]

BLAST of CmaCh13G002650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08160.1	1.6e-11	30.73	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G11660.1	7.6e-06	30.19	NDR1/HIN1-like 1	[more]

BLAST of CmaCh13G002650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071871\|ref\|XP_008462326.1\|	3.1e-65	59.81	PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]	[more]
gi\|449443378\|ref\|XP_004139454.1\|	7.6e-64	58.29	PREDICTED: uncharacterized protein LOC101218532 [Cucumis sativus]	[more]
gi\|659071883\|ref\|XP_008462391.1\|	2.1e-58	59.07	PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]	[more]
gi\|659071875\|ref\|XP_008462348.1\|	6.9e-57	62.70	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|778664980\|ref\|XP_011648454.1\|	4.4e-56	55.35	PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G002650.1	CmaCh13G002650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 94..188 score: 1.
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 17..213 score: 8.1
None	No IPR available	unknown	SSF117070	LEA14-like	coord: 50..176 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G002650	Cucsa.200330	Cucumber (Gy14) v1	cgycmaB0594
CmaCh13G002650	Csa1G132730	Cucumber (Chinese Long) v2	cmacuB203
CmaCh13G002650	MELO3C004856	Melon (DHL92) v3.5.1	cmameB194
CmaCh13G002650	ClCG01G013920	Watermelon (Charleston Gray)	cmawcgB181
CmaCh13G002650	CSPI01G14000	Wild cucumber (PI 183967)	cmacpiB205
CmaCh13G002650	CmoCh13G002720	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G002650	CmoCh12G008200	Cucurbita moschata (Rifu)	cmacmoB217
CmaCh13G002650	Lsi03G000600	Bottle gourd (USVL1VR-Ls)	cmalsiB212
CmaCh13G002650	Cp4.1LG20g07350	Cucurbita pepo (Zucchini)	cmacpeB236
CmaCh13G002650	Cp4.1LG07g06710	Cucurbita pepo (Zucchini)	cmacpeB251
CmaCh13G002650	MELO3C035547.2	Melon (DHL92) v3.6.1	cmamedB215
CmaCh13G002650	CsaV3_1G014180	Cucumber (Chinese Long) v3	cmacucB0234
CmaCh13G002650	Cla97C01G012880	Watermelon (97103) v2	cmawmbB209
CmaCh13G002650	Bhi08G000113	Wax gourd	cmawgoB0267
CmaCh13G002650	CsGy1G013990	Cucumber (Gy14) v2	cgybcmaB061
CmaCh13G002650	Carg23700	Silver-seed gourd	carcmaB0223

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh13G002650	CmaCh12G008110	Cucurbita maxima (Rimu)	cmacmaB174

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G002650	Cucurbita maxima (Rimu)	cmacmaB230
CmaCh13G002650	Cucurbita moschata (Rifu)	cmacmoB234
CmaCh13G002650	Watermelon (Charleston Gray)	cmawcgB191
CmaCh13G002650	Watermelon (Charleston Gray)	cmawcgB204
CmaCh13G002650	Watermelon (97103) v1	cmawmB204
CmaCh13G002650	Watermelon (97103) v1	cmawmB210
CmaCh13G002650	Cucurbita pepo (Zucchini)	cmacpeB224
CmaCh13G002650	Silver-seed gourd	carcmaB0467