CmoCh12G008200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G008200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative
Location	Cmo_Chr12 : 7392165 .. 7393982 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAGAGACACAACCAAGCCAAAACAAATCCCCTCAACAACATGAGCTCCACTACTAACCAACCAGATCAAGCATCATCATCATCATCCACCACTGTCCAGCCACCAAAACGAGAAAGCTCCTATGGGCAGCATAGGACAACAAACCGGACAAGGGTATTGAGAATCATAGGAAGAAGCATGTTGGGCTTAATGGTCCTTGTCGGGCTTGCACTAGTTACTTGTTGGCTTGTTGTGACCCCCAAGAAACCAGTTTTCAGCTTGGAAAGAGGCGTTGTTACACTCCATAGTTTAACCGACAGGAAGCTCAATGCCTCCGTTTCTTTCCACATTAGAAGCTTCAACCCCAACAAGAAAGCCGCCATCCACATTGATTATATGATGATGACAATCAATGAGATGGGCAGGAAGTTCGAGATGGTCATGCGCAACTTCTCCCAGGTGCCGGGAAACCTAATTGTCTTGTCCCCGACCATCCCTATCGACTTCGTATACCCATTGCCTCGGTTGCAAGAGAAGGTGAAGTTTGATGGGATCAGTCCCGAGCTTCACTTGTCGGCAAACATCAGGTATAAACATTCGACTTATGTTCCTTGTACTCCACGATTTCAAATTATATTTTACTTTCAAATACTTATCTTCTCCTCCCCAACGGATTGAGGATTATTGGGAGTGAGTCCCACATTGATTAATTTAGTGGAAGATCAGGAGTTTATAAGTGGGGAATACTATCTCCATTAGTACGAGGCATTTTGGGGTACCCCAAAACAAAGTCATGAGAGCTTATGCTCAAATTGGACAATATCATACCATTGTGGAGATCCGTGATTCCTAACACGGATGTGTGATCTCACAATCTGGCTCCGATCTCCTCAAAGTTTTTAAAACGCGATTGTCTTCTTTGAACTCTCTCGAGTGTTTCGTTCTCCTCCTCCCCAATTGGTGGCACATCACCTCATGTCCATCTGTCTTTGTGGTTCAATCTTCTTGCTGGGACATCGCCCAATGTCAAGCTCCGACACCATTTGTAATTGCTCAAACCTATACTCGTAGATATTGTCCTCCACCCCTTTCGAGGCGCAGCACCTTGCTGGTGGCACATCGCCTCATGTCCACTTGCCTTTGTGGCTCAACCTCCTTGCTGGCACATCACTCGATGTCTAGCTCCGATACCATTTGTAACTACCCAAGCCTACACTAGCAGATATTGTCCTCTTCAGACTTTTCCTTTCGGGCTTGCTTTGATACCATTTGTAAATGCCCAAACCTACCGCTAGTAGATATTGTCTTCTTTAGACTTTTTCTTTCAAGTTTTCCCTTAAGGTTTTTAAAACGCATCTGCTACGGAAAGGTTTCCACACCCTTATAAATGGTGTTTCGTTCTCCTCACCAACCGATGTTGGATCTCACAAAATTGGTCAGATTTAGCCTAATTTAATACAATTTTAACCTAAATTATAATTTTCTCTCTAAATTAATTAATTTAAAAATGCAATATATGACAAATTTATAACATTTTCCCAACTTTCTTGATTCAAATTAGCTTATACTTAAATTATAATTTTCTTTCTAAACTTTTAAATAAACATGAAAAAATTGCTAAGAATTTATGGTCTTGTCTCTATTAGATACATTATTAATGGATGGATATCAAAACGTCGATTGATGGAGATCTATTGTAATCGTCACATGCTTAAGATCAATGGTTCGACACCTTTGGATAATATCAAATGCAATGTGGATCTTTGAGATTTGATCAGGCTACGTGTTATTCTTGTTCACCATGTTCCAACTCAATAATCTAAGATGGTCCCTCAAC

mRNA sequence

GACAGAGACACAACCAAGCCAAAACAAATCCCCTCAACAACATGAGCTCCACTACTAACCAACCAGATCAAGCATCATCATCATCATCCACCACTGTCCAGCCACCAAAACGAGAAAGCTCCTATGGGCAGCATAGGACAACAAACCGGACAAGGGTATTGAGAATCATAGGAAGAAGCATGTTGGGCTTAATGGTCCTTGTCGGGCTTGCACTAGTTACTTGTTGGCTTGTTGTGACCCCCAAGAAACCAGTTTTCAGCTTGGAAAGAGGCGTTGTTACACTCCATAGTTTAACCGACAGGAAGCTCAATGCCTCCGTTTCTTTCCACATTAGAAGCTTCAACCCCAACAAGAAAGCCGCCATCCACATTGATTATATGATGATGACAATCAATGAGATGGGCAGGAAGTTCGAGATGGTCATGCGCAACTTCTCCCAGGTGCCGGGAAACCTAATTGTCTTGTCCCCGACCATCCCTATCGACTTCGTATACCCATTGCCTCGGTTGCAAGAGAAGGTGAAGTTTGATGGGATCAGTCCCGAGCTTCACTTGTCGGCAAACATCAGATACATTATTAATGGATGGATATCAAAACGTCGATTGATGGAGATCTATTGTAATCGTCACATGCTTAAGATCAATGGTTCGACACCTTTGGATAATATCAAATGCAATGTGGATCTTTGAGATTTGATCAGGCTACGTGTTATTCTTGTTCACCATGTTCCAACTCAATAATCTAAGATGGTCCCTCAAC

Coding sequence (CDS)

ATGAGCTCCACTACTAACCAACCAGATCAAGCATCATCATCATCATCCACCACTGTCCAGCCACCAAAACGAGAAAGCTCCTATGGGCAGCATAGGACAACAAACCGGACAAGGGTATTGAGAATCATAGGAAGAAGCATGTTGGGCTTAATGGTCCTTGTCGGGCTTGCACTAGTTACTTGTTGGCTTGTTGTGACCCCCAAGAAACCAGTTTTCAGCTTGGAAAGAGGCGTTGTTACACTCCATAGTTTAACCGACAGGAAGCTCAATGCCTCCGTTTCTTTCCACATTAGAAGCTTCAACCCCAACAAGAAAGCCGCCATCCACATTGATTATATGATGATGACAATCAATGAGATGGGCAGGAAGTTCGAGATGGTCATGCGCAACTTCTCCCAGGTGCCGGGAAACCTAATTGTCTTGTCCCCGACCATCCCTATCGACTTCGTATACCCATTGCCTCGGTTGCAAGAGAAGGTGAAGTTTGATGGGATCAGTCCCGAGCTTCACTTGTCGGCAAACATCAGATACATTATTAATGGATGGATATCAAAACGTCGATTGATGGAGATCTATTGTAATCGTCACATGCTTAAGATCAATGGTTCGACACCTTTGGATAATATCAAATGCAATGTGGATCTTTGA

Homology

[Close]

BLAST of CmoCh12G008200 vs. TrEMBL
Match: A0A0A0LSV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.8e-46
Identity = 103/209 (49.28%), Postives = 140/209 (66.99%), Query Frame = 1


Query: 8   PDQASSSSSTTVQPPKRESSYG-QHRTTNRTRVLRIIGRSMLGLMVLVGLALVTCWLVVT 67
           P   SSSSS       +E SY  +H T  RTRVLRI GR++LGLM+LV +A++ CWL+V 
Sbjct: 11  PPPPSSSSS-------KEMSYVIKHGTAKRTRVLRITGRTLLGLMILVAIAMIICWLIVF 70

Query: 68  PKKPVFSLERGVVTLHSLTDRKLNASVSFHIRSFNPNKKAAIHIDYMMMTINEMGRKFEM 127
           P+ P   +E G V  HSLTDRKLNA+++F + S+NPNKKA+I +D M M +++MG  F  
Sbjct: 71  PRNPDIIVETGQVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVSDMGLSFWS 130

Query: 128 VMRNFSQVPGNLIVLSPTIPIDFVYPLPRLQEKVKFDGISPELHLSANIRYIINGWISKR 187
            + +F+Q P N  VL+ TI  +F+YP   ++E +K +GISPEL  SA + YI+  W S+ 
Sbjct: 131 DIPSFTQPPKNKTVLTSTIQGNFIYPFGHMKELMKLEGISPELRFSAKVSYIMERWTSRD 190

Query: 188 RLMEIYCNRHMLKINGSTPLDNIKCNVDL 216
           RL+E+YC+   LK N ST  DN KC VDL
Sbjct: 191 RLVEVYCDSLRLKFNDSTVFDNKKCKVDL 212

[Close]

BLAST of CmoCh12G008200 vs. TrEMBL
Match: A0A0A0LVK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.8e-43
Identity = 97/215 (45.12%), Postives = 135/215 (62.79%), Query Frame = 1


Query: 1   MSSTTNQPDQASSSSSTTVQPPKRESSYGQHRTTNRTRVLRIIGRSMLGLMVLVGLALVT 60
           M S+T    +ASSS         ++SS GQ+ TT +TR++RIIGRS+L ++ LVGLA+V 
Sbjct: 1   MRSSTTAKGEASSS---------KKSSKGQNETTKKTRIIRIIGRSLLSVIFLVGLAMVI 60

Query: 61  CWLVVTPKKPVFSLERGVVTLHSLTDRKLNASVSFHIRSFNPNKKAAIHIDYMMMTINEM 120
           CWLVV PK P   +E G V  H+ T   LNA++ F ++ +NPNK+A++H+  M M +  M
Sbjct: 61  CWLVVFPKNPRIFVETGRVIAHNSTHNMLNATIVFTVKCYNPNKRASVHLHSMRMIVTSM 120

Query: 121 GRKFEMVMRNFSQVPGNLIVLSPTIPIDFVYPLPRLQEKVKFDGISPELHLSANIRYIIN 180
           G+ F  V+  F Q PGN  VLSP + ++F YP    +E      I+PELH SA I Y + 
Sbjct: 121 GQAFSSVIPTFMQTPGNQTVLSPAVEVNFDYPFGHQEE------INPELHFSAEISYSVE 180

Query: 181 GWISKRRLMEIYCNRHMLKINGSTPLDNIKCNVDL 216
            W S+ RL+ IYCN  +L+IN +   +N KCNVDL
Sbjct: 181 HWTSRPRLLLIYCNNLLLRINDTRTFENTKCNVDL 200

[Close]

BLAST of CmoCh12G008200 vs. TrEMBL
Match: A0A0A0LV68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.6e-42
Identity = 104/216 (48.15%), Postives = 140/216 (64.81%), Query Frame = 1


Query: 2   SSTTNQPDQASSSSSTTVQPPKRESSYGQHRTTNRTRVLRIIGRSMLGLMVLVGLALVTC 61
           S+TT    Q  +SSS+ ++ PKR  +Y QH    RTRV+RIIGRS+L  ++L+G+A++TC
Sbjct: 4   STTTTTTTQGEASSSSIIRAPKR-GAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTC 63

Query: 62  WLVVTPKKPVFSLERGVVTLHSLTDRKLNASVSFHIRSFNPNKKAAIHIDYMMMTI-NEM 121
           W VV P+ P   +E G VT +  T RKLNA++ F+IRS+NPNK+A+I++D M MT+ N M
Sbjct: 64  WFVVIPRTPQLMVESGQVTGYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYM 123

Query: 122 GRKFEMVMRNFSQVPGNLIVLSPTIPIDFVYPLPRLQEKVKFDGISPELHLSANIRYIIN 181
              F   + NF+  P N+ VL+PTI ++ +YP  R    +    I  EL  SA + YI N
Sbjct: 124 SVPFHSDIPNFTMTPRNMTVLTPTILVNCIYPFGR---PLHAGWIHIELSFSAKVSYIFN 183

Query: 182 GWISKRRLMEIYCNRHMLKINGSTP-LDNIKCNVDL 216
            W SK RLMEIYCN    KI+ S P  DNIKC VDL
Sbjct: 184 RWASKPRLMEIYCNHFWFKIDDSMPNFDNIKCQVDL 215

[Close]

BLAST of CmoCh12G008200 vs. TrEMBL
Match: A0A0A0LY09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.3e-41
Identity = 87/184 (47.28%), Postives = 121/184 (65.76%), Query Frame = 1


Query: 31  HRTTNRTRVLRIIGRSMLGLMVLVGLALVTCWLVVTPKKPVFSLERGVVTLHSLTDRKLN 90
           H  T RTR++R++GRS+LG++ LV L ++ CWLVV PK P   +E G V  HS T   LN
Sbjct: 10  HGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIAHSSTISMLN 69

Query: 91  ASVSFHIRSFNPNKKAAIHIDYMMMTINEMGRKFEMVMRNFSQVPGNLIVLSPTIPIDFV 150
           A+++F ++S+NPNK+A+IH+DYM M ++ MG +F   + +F+  P N  VLS  + ++F 
Sbjct: 70  ATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLSSAVQVNFE 129

Query: 151 YPLPRLQEKVKFDGISPELHLSANIRYIINGWISKRRLMEIYCNRHMLKINGSTPLDNIK 210
           YP    +E      I+PEL  SA + Y I  W+SK RL+EIYCN  +LKIN ST  DN K
Sbjct: 130 YPFGYTEE------INPELQFSAEVSYSIKKWMSKPRLLEIYCNHILLKINDSTAFDNTK 187

Query: 211 CNVD 215
           C VD
Sbjct: 190 CKVD 187

[Close]

BLAST of CmoCh12G008200 vs. TrEMBL
Match: A0A0A0LSU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-40
Identity = 99/217 (45.62%), Postives = 141/217 (64.98%), Query Frame = 1


Query: 1   MSSTTNQPDQASSSSSTTVQPPKRESSYGQHRTTNRTRVLRIIGRSMLGLMVLVGLALVT 60
           M STT Q + ASSS    ++ PKR S   Q  TT RTR++RIIGRS+L +++ + +A++T
Sbjct: 1   MRSTTTQGEGASSS---IIEAPKR-SFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIIT 60

Query: 61  CWLVVTPKKPVFSLERGVVTLHSLTDRKLNASVSFHIRSFNPNKKAAIHIDYMMMTINE- 120
           CWLVV P+ P   +E   VT H  T+R LNA++ F+I+S+NPNKKA+IH+D + M +++ 
Sbjct: 61  CWLVVFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDY 120

Query: 121 MGRKFEMVMRNFSQVPGNLIVLSPTIPIDFVYPLPRLQEKVKFDGISPELHLSANIRYII 180
           MG  F   +  F+ +P N +V + T+ ++F+YP  R    V  D +  EL  SA + YI+
Sbjct: 121 MGLPFHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGR---PVHSDWVHLELRFSAQVSYIV 180

Query: 181 NGWISKRRLMEIYCNRHMLKINGSTP-LDNIKCNVDL 216
           N W SK RL+EIYC+   L+IN STP  D  KC VDL
Sbjct: 181 NRWRSKPRLLEIYCDHLWLRINDSTPNFDKTKCRVDL 210

[Close]

BLAST of CmoCh12G008200 vs. NCBI nr
Match: gi|449443378|ref|XP_004139454.1| (PREDICTED: uncharacterized protein LOC101218532 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 5.5e-46
Identity = 103/209 (49.28%), Postives = 140/209 (66.99%), Query Frame = 1


Query: 8   PDQASSSSSTTVQPPKRESSYG-QHRTTNRTRVLRIIGRSMLGLMVLVGLALVTCWLVVT 67
           P   SSSSS       +E SY  +H T  RTRVLRI GR++LGLM+LV +A++ CWL+V 
Sbjct: 11  PPPPSSSSS-------KEMSYVIKHGTAKRTRVLRITGRTLLGLMILVAIAMIICWLIVF 70

Query: 68  PKKPVFSLERGVVTLHSLTDRKLNASVSFHIRSFNPNKKAAIHIDYMMMTINEMGRKFEM 127
           P+ P   +E G V  HSLTDRKLNA+++F + S+NPNKKA+I +D M M +++MG  F  
Sbjct: 71  PRNPDIIVETGQVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVSDMGLSFWS 130

Query: 128 VMRNFSQVPGNLIVLSPTIPIDFVYPLPRLQEKVKFDGISPELHLSANIRYIINGWISKR 187
            + +F+Q P N  VL+ TI  +F+YP   ++E +K +GISPEL  SA + YI+  W S+ 
Sbjct: 131 DIPSFTQPPKNKTVLTSTIQGNFIYPFGHMKELMKLEGISPELRFSAKVSYIMERWTSRD 190

Query: 188 RLMEIYCNRHMLKINGSTPLDNIKCNVDL 216
           RL+E+YC+   LK N ST  DN KC VDL
Sbjct: 191 RLVEVYCDSLRLKFNDSTVFDNKKCKVDL 212

[Close]

BLAST of CmoCh12G008200 vs. NCBI nr
Match: gi|659071871|ref|XP_008462326.1| (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 7.9e-45
Identity = 101/215 (46.98%), Postives = 139/215 (64.65%), Query Frame = 1


Query: 1   MSSTTNQPDQASSSSSTTVQPPKRESSYGQHRTTNRTRVLRIIGRSMLGLMVLVGLALVT 60
           M S   Q + +SSS+       K  S   +H    RTRVLRI GR++LGLM+LV +A++ 
Sbjct: 1   MRSIATQGEPSSSSA-------KEISYVEKHGAAKRTRVLRITGRTLLGLMILVAIAMII 60

Query: 61  CWLVVTPKKPVFSLERGVVTLHSLTDRKLNASVSFHIRSFNPNKKAAIHIDYMMMTINEM 120
           CWL+V P+ P   +E G V  HSLTDRKLNA+++F + S+NPNKKA+I +D M M + +M
Sbjct: 61  CWLIVFPRNPDLIVETGKVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVTDM 120

Query: 121 GRKFEMVMRNFSQVPGNLIVLSPTIPIDFVYPLPRLQEKVKFDGISPELHLSANIRYIIN 180
           G  F   + +F+Q P N  VL+ TI  +F+YP   ++E VK +GISP+L  SA + YI+ 
Sbjct: 121 GLSFWSDIPSFTQPPKNKTVLNSTIQGNFIYPFGHMKELVKLEGISPDLRFSAKVSYIME 180

Query: 181 GWISKRRLMEIYCNRHMLKINGSTPLDNIKCNVDL 216
            W S+ RL+E+YC+   LK N ST  DN KC VDL
Sbjct: 181 RWTSRGRLLEVYCDSLRLKFNDSTVFDNKKCKVDL 208

[Close]

BLAST of CmoCh12G008200 vs. NCBI nr
Match: gi|659071873|ref|XP_008462337.1| (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 6.7e-44
Identity = 100/215 (46.51%), Postives = 135/215 (62.79%), Query Frame = 1


Query: 1   MSSTTNQPDQASSSSSTTVQPPKRESSYGQHRTTNRTRVLRIIGRSMLGLMVLVGLALVT 60
           M S T    +ASSS         R+SS GQ+ TT +TR++RIIGR +L ++ LVGLA+V 
Sbjct: 1   MRSITTTKGEASSS---------RKSSKGQNETTKKTRIIRIIGRCLLSVIFLVGLAMVI 60

Query: 61  CWLVVTPKKPVFSLERGVVTLHSLTDRKLNASVSFHIRSFNPNKKAAIHIDYMMMTINEM 120
           CWLVV PK P F +E G V  H+ T   LNA+++F ++ +NPNK+A+IH+  M M I  M
Sbjct: 61  CWLVVFPKNPRFVVETGKVIAHNSTHNMLNATIAFTVKCYNPNKRASIHLHSMRMIITSM 120

Query: 121 GRKFEMVMRNFSQVPGNLIVLSPTIPIDFVYPLPRLQEKVKFDGISPELHLSANIRYIIN 180
           G+ F   M  F Q PGN  VLSP + ++F YP    +E      I+PELH SA I Y + 
Sbjct: 121 GQAFSSAMPMFMQTPGNQTVLSPAVDVNFDYPFGHREE------INPELHFSAEISYSVG 180

Query: 181 GWISKRRLMEIYCNRHMLKINGSTPLDNIKCNVDL 216
            W S+ RL++IYCN  +L+IN +   +N KCNVDL
Sbjct: 181 HWTSRPRLLQIYCNNLLLRINDTRTFENTKCNVDL 200

[Close]

BLAST of CmoCh12G008200 vs. NCBI nr
Match: gi|778664980|ref|XP_011648454.1| (PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 97/215 (45.12%), Postives = 135/215 (62.79%), Query Frame = 1


Query: 1   MSSTTNQPDQASSSSSTTVQPPKRESSYGQHRTTNRTRVLRIIGRSMLGLMVLVGLALVT 60
           M S+T    +ASSS         ++SS GQ+ TT +TR++RIIGRS+L ++ LVGLA+V 
Sbjct: 1   MRSSTTAKGEASSS---------KKSSKGQNETTKKTRIIRIIGRSLLSVIFLVGLAMVI 60

Query: 61  CWLVVTPKKPVFSLERGVVTLHSLTDRKLNASVSFHIRSFNPNKKAAIHIDYMMMTINEM 120
           CWLVV PK P   +E G V  H+ T   LNA++ F ++ +NPNK+A++H+  M M +  M
Sbjct: 61  CWLVVFPKNPRIFVETGRVIAHNSTHNMLNATIVFTVKCYNPNKRASVHLHSMRMIVTSM 120

Query: 121 GRKFEMVMRNFSQVPGNLIVLSPTIPIDFVYPLPRLQEKVKFDGISPELHLSANIRYIIN 180
           G+ F  V+  F Q PGN  VLSP + ++F YP    +E      I+PELH SA I Y + 
Sbjct: 121 GQAFSSVIPTFMQTPGNQTVLSPAVEVNFDYPFGHQEE------INPELHFSAEISYSVE 180

Query: 181 GWISKRRLMEIYCNRHMLKINGSTPLDNIKCNVDL 216
            W S+ RL+ IYCN  +L+IN +   +N KCNVDL
Sbjct: 181 HWTSRPRLLLIYCNNLLLRINDTRTFENTKCNVDL 200

[Close]

BLAST of CmoCh12G008200 vs. NCBI nr
Match: gi|778659281|ref|XP_011654120.1| (PREDICTED: uncharacterized protein LOC105435303 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 3.7e-42
Identity = 104/216 (48.15%), Postives = 140/216 (64.81%), Query Frame = 1


Query: 2   SSTTNQPDQASSSSSTTVQPPKRESSYGQHRTTNRTRVLRIIGRSMLGLMVLVGLALVTC 61
           S+TT    Q  +SSS+ ++ PKR  +Y QH    RTRV+RIIGRS+L  ++L+G+A++TC
Sbjct: 4   STTTTTTTQGEASSSSIIRAPKR-GAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTC 63

Query: 62  WLVVTPKKPVFSLERGVVTLHSLTDRKLNASVSFHIRSFNPNKKAAIHIDYMMMTI-NEM 121
           W VV P+ P   +E G VT +  T RKLNA++ F+IRS+NPNK+A+I++D M MT+ N M
Sbjct: 64  WFVVIPRTPQLMVESGQVTGYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYM 123

Query: 122 GRKFEMVMRNFSQVPGNLIVLSPTIPIDFVYPLPRLQEKVKFDGISPELHLSANIRYIIN 181
              F   + NF+  P N+ VL+PTI ++ +YP  R    +    I  EL  SA + YI N
Sbjct: 124 SVPFHSDIPNFTMTPRNMTVLTPTILVNCIYPFGR---PLHAGWIHIELSFSAKVSYIFN 183

Query: 182 GWISKRRLMEIYCNRHMLKINGSTP-LDNIKCNVDL 216
            W SK RLMEIYCN    KI+ S P  DNIKC VDL
Sbjct: 184 RWASKPRLMEIYCNHFWFKIDDSMPNFDNIKCQVDL 215

The following BLAST results are available for this feature:

BLAST of CmoCh12G008200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh12G008200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSV0_CUCSA	3.8e-46	49.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1	[more]
A0A0A0LVK9_CUCSA	8.8e-43	45.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1	[more]
A0A0A0LV68_CUCSA	2.6e-42	48.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1	[more]
A0A0A0LY09_CUCSA	1.3e-41	47.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1	[more]
A0A0A0LSU5_CUCSA	1.4e-40	45.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1	[more]

BLAST of CmoCh12G008200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh12G008200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443378\|ref\|XP_004139454.1\|	5.5e-46	49.28	PREDICTED: uncharacterized protein LOC101218532 [Cucumis sativus]	[more]
gi\|659071871\|ref\|XP_008462326.1\|	7.9e-45	46.98	PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]	[more]
gi\|659071873\|ref\|XP_008462337.1\|	6.7e-44	46.51	PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]	[more]
gi\|778664980\|ref\|XP_011648454.1\|	1.3e-42	45.12	PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus]	[more]
gi\|778659281\|ref\|XP_011654120.1\|	3.7e-42	48.15	PREDICTED: uncharacterized protein LOC105435303 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008200.1	CmoCh12G008200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 19..215 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G008200	Cucsa.200330	Cucumber (Gy14) v1	cgycmoB0593
CmoCh12G008200	CmaCh12G008110	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G008200	CmaCh13G002650	Cucurbita maxima (Rimu)	cmacmoB217
CmoCh12G008200	Csa1G132730	Cucumber (Chinese Long) v2	cmocuB148
CmoCh12G008200	MELO3C004856	Melon (DHL92) v3.5.1	cmomeB138
CmoCh12G008200	ClCG01G013920	Watermelon (Charleston Gray)	cmowcgB142
CmoCh12G008200	CSPI01G14000	Wild cucumber (PI 183967)	cmocpiB148
CmoCh12G008200	Lsi03G000610	Bottle gourd (USVL1VR-Ls)	cmolsiB158
CmoCh12G008200	Cp4.1LG20g07350	Cucurbita pepo (Zucchini)	cmocpeB165
CmoCh12G008200	Cp4.1LG07g06710	Cucurbita pepo (Zucchini)	cmocpeB175
CmoCh12G008200	MELO3C035547.2	Melon (DHL92) v3.6.1	cmomedB151
CmoCh12G008200	CsaV3_1G014180	Cucumber (Chinese Long) v3	cmocucB0172
CmoCh12G008200	Cla97C01G012890	Watermelon (97103) v2	cmowmbB149
CmoCh12G008200	Bhi08G000113	Wax gourd	cmowgoB0214
CmoCh12G008200	CsGy1G013990	Cucumber (Gy14) v2	cgybcmoB054
CmoCh12G008200	Carg23700	Silver-seed gourd	carcmoB0233

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh12G008200	CmoCh13G002720	Cucurbita moschata (Rifu)	cmocmoB135

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G008200	Watermelon (97103) v1	cmowmB151
CmoCh12G008200	Cucurbita pepo (Zucchini)	cmocpeB179