CsGy1G013990 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G013990
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	NDR1/HIN1-like protein 12
Location	Chr1 : 9610033 .. 9611225 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGTACTACTACACAGGGAGAAGGAGCATCATCCTCCATTATTGAGGCACCAAAACGAAGCTTCTGTAGACAACGTGAGACAACAAAACGCACAAGAATCATAAGAATCATAGGAAGAAGTTTGTTGTCTGTAATAATCTTCTTGAGTGTTGCAATTATCACATGTTGGCTTGTTGTTTTCCCCAGAACCCCACGTCTCATGGTGGAAACTAGCAAAGTGACAGCCCATGGTTCAACTAATAGACACCTCAATGCAACCATAGTTTTCTACATCAAAAGCTACAACCCTAACAAAAAAGCCTCCATTCACATGGATTCTGTGAAGATGATAGTCAGTGATTATATGGGGCTACCGTTTCACTCCACCATCCCCACCTTCACGTTGATGCCTCGAAACGAGATGGTCTTCAACTCAACCGTTCGTGTCAACTTCATGTACCCATTTGGGCGCCCGGTGCATTCGGACTGGGTACATCTAGAGCTTCGCTTCTCTGCTCAAGTTAGGTACGTACAAACATGTATGAACATAGAAGTGTTGTTGGTTTTGTTGGTGTAAATTATTTATTTTTATTCTTACTTTAGAATTAGAATTAGTTTTGAAAAACTCTTAAAATTTTAGGAGTATTATTTTTTACACAAAATGGTAACTGTTCTATCATTTTTGAATTCTTTTTGACATATAAGAGTATTTTTTAAACATTTGAAAGTTGAAATATATTTTTTGACATAAGTAAAAAGTTGGAAGAGATATTTTGTATAATTTTGCCTTAATTGCTTTTAGATTTTAATTAAAATTAAACCGATGGATACTACTAATGCCAAAATTTGCCTATATCTTTAATAAGTCATGGCTTTGTTTGTATCAGTTACATTGTGAACAGATGGAGGTCGAAACCACGATTGCTGGAGATCTATTGTGATCACCTTTGGCTTAGGATTAATGATTCTACCCCTAATTTTGATAAAACCAAATGCAGAGTGGATCTTTAAAGAGATTTGATCTAGATGTGTTGTTGATCTTGTTTAAGAAGATATGTTATTCATGCTGGTTATATAATTCCAAAAGATTTGTAATTGAAATATTCATTTCCTTTAGGTTTAATTTCTTTCTTTATCAATAGAGTTCTTAATGTTTTATAATGTTTTTTTTTAATGGTTAAAATATCATTTTCATCAATGTACTTTGAT

mRNA sequence

ATGAGGAGTACTACTACACAGGGAGAAGGAGCATCATCCTCCATTATTGAGGCACCAAAACGAAGCTTCTGTAGACAACGTGAGACAACAAAACGCACAAGAATCATAAGAATCATAGGAAGAAGTTTGTTGTCTGTAATAATCTTCTTGAGTGTTGCAATTATCACATGTTGGCTTGTTGTTTTCCCCAGAACCCCACGTCTCATGGTGGAAACTAGCAAAGTGACAGCCCATGGTTCAACTAATAGACACCTCAATGCAACCATAGTTTTCTACATCAAAAGCTACAACCCTAACAAAAAAGCCTCCATTCACATGGATTCTGTGAAGATGATAGTCAGTGATTATATGGGGCTACCGTTTCACTCCACCATCCCCACCTTCACGTTGATGCCTCGAAACGAGATGGTCTTCAACTCAACCGTTCGTGTCAACTTCATGTACCCATTTGGGCGCCCGGTGCATTCGGACTGGGTACATCTAGAGCTTCGCTTCTCTGCTCAAGTTAGTTACATTGTGAACAGATGGAGGTCGAAACCACGATTGCTGGAGATCTATTGTGATCACCTTTGGCTTAGGATTAATGATTCTACCCCTAATTTTGATAAAACCAAATGCAGAGTGGATCTTTAAAGAGATTTGATCTAGATGTGTTGTTGATCTTGTTTAAGAAGATATGTTATTCATGCTGGTTATATAATTCCAAAAGATTTGTAATTGAAATATTCATTTCCTTTAGGTTTAATTTCTTTCTTTATCAATAGAGTTCTTAATGTTTTATAATGTTTTTTTTTAATGGTTAAAATATCATTTTCATCAATGTACTTTGAT

Coding sequence (CDS)

ATGAGGAGTACTACTACACAGGGAGAAGGAGCATCATCCTCCATTATTGAGGCACCAAAACGAAGCTTCTGTAGACAACGTGAGACAACAAAACGCACAAGAATCATAAGAATCATAGGAAGAAGTTTGTTGTCTGTAATAATCTTCTTGAGTGTTGCAATTATCACATGTTGGCTTGTTGTTTTCCCCAGAACCCCACGTCTCATGGTGGAAACTAGCAAAGTGACAGCCCATGGTTCAACTAATAGACACCTCAATGCAACCATAGTTTTCTACATCAAAAGCTACAACCCTAACAAAAAAGCCTCCATTCACATGGATTCTGTGAAGATGATAGTCAGTGATTATATGGGGCTACCGTTTCACTCCACCATCCCCACCTTCACGTTGATGCCTCGAAACGAGATGGTCTTCAACTCAACCGTTCGTGTCAACTTCATGTACCCATTTGGGCGCCCGGTGCATTCGGACTGGGTACATCTAGAGCTTCGCTTCTCTGCTCAAGTTAGTTACATTGTGAACAGATGGAGGTCGAAACCACGATTGCTGGAGATCTATTGTGATCACCTTTGGCTTAGGATTAATGATTCTACCCCTAATTTTGATAAAACCAAATGCAGAGTGGATCTTTAA

Protein sequence

MRSTTTQGEGASSSIIEAPKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLVVFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLPFHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKPRLLEIYCDHLWLRINDSTPNFDKTKCRVDL

Homology

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BLAST of CsGy1G013990 vs. NCBI nr
Match: KGN64863.1 (hypothetical protein Csa_1G132730 [Cucumis sativus])

HSP 1 Score: 424.5 bits (1090), Expect = 2.1e-115
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MRSTTTQGEGASSSIIEAPKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLV 60
           MRSTTTQGEGASSSIIEAPKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLV
Sbjct: 1   MRSTTTQGEGASSSIIEAPKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLV 60

Query: 61  VFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLP 120
           VFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLP
Sbjct: 61  VFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLP 120

Query: 121 FHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKP 180
           FHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKP
Sbjct: 121 FHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKP 180

Query: 181 RLLEIYCDHLWLRINDSTPNFDKTKCRVDL 211
           RLLEIYCDHLWLRINDSTPNFDKTKCRVDL
Sbjct: 181 RLLEIYCDHLWLRINDSTPNFDKTKCRVDL 210

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BLAST of CsGy1G013990 vs. NCBI nr
Match: XP_008462391.1 (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 361.3 bits (926), Expect = 2.2e-96
Identity = 180/211 (85.31%), Postives = 190/211 (90.05%), Query Frame = 0


Query: 1   MRSTTTQGEGASSSIIEAPKRSFCRQR-ETTKRTRIIRIIGRSLLSVIIFLSVAIITCWL 60
           MRST             APKRSF RQR ETTKRTRIIRIIGRSLL VIIFLSVAIITCWL
Sbjct: 1   MRSTXXXXXXXXXXXXXAPKRSFYRQRHETTKRTRIIRIIGRSLLCVIIFLSVAIITCWL 60

Query: 61  VVFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGL 120
           VVFPRTPRLMVETSKVTAHGSTNR LNATIVFYIKSYNPNKKASI+MDS+KMIV DYMGL
Sbjct: 61  VVFPRTPRLMVETSKVTAHGSTNRKLNATIVFYIKSYNPNKKASIYMDSMKMIVKDYMGL 120

Query: 121 PFHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSK 180
           PFHS IPTFTLMPRNE VFNSTVRVN +YPFGRPVHSDW+HLELRFSA+VSYIVNRW+SK
Sbjct: 121 PFHSAIPTFTLMPRNETVFNSTVRVNLIYPFGRPVHSDWIHLELRFSAKVSYIVNRWKSK 180

Query: 181 PRLLEIYCDHLWLRINDSTPNFDKTKCRVDL 211
           PRLLEIYCDHLWL+INDSTPNFD+TKC+VD+
Sbjct: 181 PRLLEIYCDHLWLKINDSTPNFDRTKCKVDI 211

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BLAST of CsGy1G013990 vs. NCBI nr
Match: XP_011648453.1 (PREDICTED: uncharacterized protein LOC105434468 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 2.1e-78
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 69  MVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLPFHSTIPTF 128
           MVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLPFHSTIPTF
Sbjct: 1   MVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLPFHSTIPTF 60

Query: 129 TLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKPRLLEIYCD 188
           TLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKPRLLEIYCD
Sbjct: 61  TLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKPRLLEIYCD 120

Query: 189 HLWLRINDSTPNFDKTKCRVDL 211
           HLWLRINDSTPNFDKTKCRVDL
Sbjct: 121 HLWLRINDSTPNFDKTKCRVDL 142

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BLAST of CsGy1G013990 vs. NCBI nr
Match: XP_011654120.1 (PREDICTED: uncharacterized protein LOC105435303 [Cucumis sativus] >KGN64864.1 hypothetical protein Csa_1G132740 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 1.3e-67
Identity = 124/193 (64.25%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 18  APKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLVVFPRTPRLMVETSKVTA 77
           APKR   RQ    KRTR+IRIIGRSLL  I+ L +AI+TCW VV PRTP+LMVE+ +VT 
Sbjct: 23  APKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVTG 82

Query: 78  HGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLPFHSTIPTFTLMPRNEMV 137
           + ST R LNATIVF I+SYNPNK+ASI++DS+KM V +YM +PFHS IP FT+ PRN  V
Sbjct: 83  YHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMTV 142

Query: 138 FNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKPRLLEIYCDHLWLRINDS 197
              T+ VN +YPFGRP+H+ W+H+EL FSA+VSYI NRW SKPRL+EIYC+H W +I+DS
Sbjct: 143 LTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDDS 202

Query: 198 TPNFDKTKCRVDL 211
            PNFD  KC+VDL
Sbjct: 203 MPNFDNIKCQVDL 215

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BLAST of CsGy1G013990 vs. NCBI nr
Match: XP_023520091.1 (uncharacterized protein At1g08160-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.0 bits (580), Expect = 2.9e-56
Identity = 129/216 (59.72%), Postives = 158/216 (73.15%), Query Frame = 0


Query: 1   MRSTTTQGEGASS--SIIEAPK-RSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITC 60
           MRS  TQGE +SS  SIIEAPK  S+  Q  T KRT+++RIIGRSLL+V+  + +AI+ C
Sbjct: 1   MRS-NTQGEASSSTTSIIEAPKPSSYGHQHGTAKRTKLMRIIGRSLLAVMFLVGLAIVIC 60

Query: 61  WLVVFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYM 120
           WLVVFP+TP L++E   VT H  T+R LNA+I F IKSYNPNK+ASIHMDS+KM + D M
Sbjct: 61  WLVVFPKTPNLILENGHVTPHSLTDRKLNASISFTIKSYNPNKRASIHMDSMKMTLDD-M 120

Query: 121 GLPFHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRP---VHSDWVHLELRFSAQVSYIVN 180
           G  F +TIPTFT  P N+   N TV VNF+YPFG+    + SD ++ EL FSA VSYIV 
Sbjct: 121 GQTFTTTIPTFTQPPGNQTFLNPTVEVNFIYPFGQMKDLMLSDGLNPELHFSAHVSYIVE 180

Query: 181 RWRSKPRLLEIYCDHLWLRINDSTPNFDKTKCRVDL 211
           +W SK R LEIYCD + L+IN STP FD TKC+VDL
Sbjct: 181 KWASKRRSLEIYCDRVRLKINGSTP-FDNTKCKVDL 213

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BLAST of CsGy1G013990 vs. TAIR10
Match: AT5G22870.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-09
Identity = 53/194 (27.32%), Postives = 89/194 (45.88%), Query Frame = 0


Query: 31  KRTRIIRIIGRSLLSVIIFLSVAIITCWLVVFPRTPRLMVETSKVTAHGSTN-RHLNATI 90
           +R  +I  I   +L++I   +V  +  WL   P+  R  VE + V     TN  H++AT 
Sbjct: 21  RRPSLICYIFLVILTLIFMAAVGFLITWLETKPKKLRYTVENASVQNFNLTNDNHMSATF 80

Query: 91  VFYIKSYNPNKKASIHMDSVKMIVS--------DYMGLPFHSTIPTFTLMPRNEMVFNST 150
            F I+S+NPN + S++  SV++ V         D +  PFH   P   +   +E +    
Sbjct: 81  QFTIQSHNPNHRISVYYSSVEIFVKFKDQTLAFDTVE-PFHQ--PRMNVKQIDETLIAEN 140

Query: 151 VRVNFMYPFGRPVHSD----WVHLELRFSAQVSYIVNRWRSKPRLLEIYCDHLWLRINDS 210
           V V+     G+ + S      +  E+   A+V + V  W+S  R  +I C H+ + +  S
Sbjct: 141 VAVS--KSNGKDLRSQNSLGKIGFEVFVKARVRFKVGIWKSSHRTAKIKCSHVTVSL--S 200

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BLAST of CsGy1G013990 vs. TAIR10
Match: AT1G08160.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 55.8 bits (133), Expect = 3.6e-08
Identity = 43/163 (26.38%), Postives = 75/163 (46.01%), Query Frame = 0


Query: 58  WLVVFPRTPRLMVETSKVT--AHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSD 117
           +L + P+     VE + V   A G+ + H+NA   + IKSYNP K  S+   S+++  + 
Sbjct: 59  YLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRISTAH 118

Query: 118 YMGLPFHSTIPTFTLMPRNE------MVFNSTVRVNFMYPFGRPVHS-DWVHLELRFSAQ 177
           +     H  I  F   P+NE      +V ++     F     R   S   + +E+  +A+
Sbjct: 119 HNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAEKSKGTIEMEVYITAR 178

Query: 178 VSYIVNRWRSKPRLLEIYCDHLWLRINDST-PNFDKTKCRVDL 211
           VSY    +RS+ R L+  C  + + +  S+   F +  C+  L
Sbjct: 179 VSYKTWIFRSRRRTLKAVCTPVMINVTSSSLDGFQRVLCKTRL 221

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BLAST of CsGy1G013990 vs. Swiss-Prot
Match: sp|Q8VZ13|Y1816_ARATH (Uncharacterized protein At1g08160 OS=Arabidopsis thaliana OX=3702 GN=At1g08160 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.5e-07
Identity = 43/163 (26.38%), Postives = 75/163 (46.01%), Query Frame = 0


Query: 58  WLVVFPRTPRLMVETSKVT--AHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSD 117
           +L + P+     VE + V   A G+ + H+NA   + IKSYNP K  S+   S+++  + 
Sbjct: 59  YLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRISTAH 118

Query: 118 YMGLPFHSTIPTFTLMPRNE------MVFNSTVRVNFMYPFGRPVHS-DWVHLELRFSAQ 177
           +     H  I  F   P+NE      +V ++     F     R   S   + +E+  +A+
Sbjct: 119 HNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAEKSKGTIEMEVYITAR 178

Query: 178 VSYIVNRWRSKPRLLEIYCDHLWLRINDST-PNFDKTKCRVDL 211
           VSY    +RS+ R L+  C  + + +  S+   F +  C+  L
Sbjct: 179 VSYKTWIFRSRRRTLKAVCTPVMINVTSSSLDGFQRVLCKTRL 221

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BLAST of CsGy1G013990 vs. TrEMBL
Match: tr|A0A0A0LSU5|A0A0A0LSU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132730 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 1.4e-115
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MRSTTTQGEGASSSIIEAPKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLV 60
           MRSTTTQGEGASSSIIEAPKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLV
Sbjct: 1   MRSTTTQGEGASSSIIEAPKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLV 60

Query: 61  VFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLP 120
           VFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLP
Sbjct: 61  VFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLP 120

Query: 121 FHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKP 180
           FHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKP
Sbjct: 121 FHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKP 180

Query: 181 RLLEIYCDHLWLRINDSTPNFDKTKCRVDL 211
           RLLEIYCDHLWLRINDSTPNFDKTKCRVDL
Sbjct: 181 RLLEIYCDHLWLRINDSTPNFDKTKCRVDL 210

[Close]

BLAST of CsGy1G013990 vs. TrEMBL
Match: tr|A0A1S3CGU2|A0A1S3CGU2_CUCME (uncharacterized protein At1g08160-like OS=Cucumis melo OX=3656 GN=LOC103500758 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.5e-96
Identity = 180/211 (85.31%), Postives = 190/211 (90.05%), Query Frame = 0


Query: 1   MRSTTTQGEGASSSIIEAPKRSFCRQR-ETTKRTRIIRIIGRSLLSVIIFLSVAIITCWL 60
           MRST             APKRSF RQR ETTKRTRIIRIIGRSLL VIIFLSVAIITCWL
Sbjct: 1   MRSTXXXXXXXXXXXXXAPKRSFYRQRHETTKRTRIIRIIGRSLLCVIIFLSVAIITCWL 60

Query: 61  VVFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGL 120
           VVFPRTPRLMVETSKVTAHGSTNR LNATIVFYIKSYNPNKKASI+MDS+KMIV DYMGL
Sbjct: 61  VVFPRTPRLMVETSKVTAHGSTNRKLNATIVFYIKSYNPNKKASIYMDSMKMIVKDYMGL 120

Query: 121 PFHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSK 180
           PFHS IPTFTLMPRNE VFNSTVRVN +YPFGRPVHSDW+HLELRFSA+VSYIVNRW+SK
Sbjct: 121 PFHSAIPTFTLMPRNETVFNSTVRVNLIYPFGRPVHSDWIHLELRFSAKVSYIVNRWKSK 180

Query: 181 PRLLEIYCDHLWLRINDSTPNFDKTKCRVDL 211
           PRLLEIYCDHLWL+INDSTPNFD+TKC+VD+
Sbjct: 181 PRLLEIYCDHLWLKINDSTPNFDRTKCKVDI 211

[Close]

BLAST of CsGy1G013990 vs. TrEMBL
Match: tr|A0A0A0LV68|A0A0A0LV68_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132740 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 8.4e-68
Identity = 124/193 (64.25%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 18  APKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLVVFPRTPRLMVETSKVTA 77
           APKR   RQ    KRTR+IRIIGRSLL  I+ L +AI+TCW VV PRTP+LMVE+ +VT 
Sbjct: 23  APKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVTG 82

Query: 78  HGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLPFHSTIPTFTLMPRNEMV 137
           + ST R LNATIVF I+SYNPNK+ASI++DS+KM V +YM +PFHS IP FT+ PRN  V
Sbjct: 83  YHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMTV 142

Query: 138 FNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKPRLLEIYCDHLWLRINDS 197
              T+ VN +YPFGRP+H+ W+H+EL FSA+VSYI NRW SKPRL+EIYC+H W +I+DS
Sbjct: 143 LTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDDS 202

Query: 198 TPNFDKTKCRVDL 211
            PNFD  KC+VDL
Sbjct: 203 MPNFDNIKCQVDL 215

[Close]

BLAST of CsGy1G013990 vs. TrEMBL
Match: tr|A0A1S3CGV1|A0A1S3CGV1_CUCME (uncharacterized protein LOC103500736 OS=Cucumis melo OX=3656 GN=LOC103500736 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.8e-55
Identity = 101/163 (61.96%), Postives = 127/163 (77.91%), Query Frame = 0


Query: 48  IFLSVAIITCWLVVFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMD 107
           + L +AI+TCW VV PRTPRLMVE+ KVT + STNR LNATIV  I+SYNPNK+ASI+MD
Sbjct: 1   MLLGIAILTCWFVVIPRTPRLMVESGKVTGYHSTNRKLNATIVLNIRSYNPNKRASIYMD 60

Query: 108 SVKMIVSDYMGLPFHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSA 167
           S+KM V + M +PFHS IP FT+ P+N  V N T+ VNF+YPFG P+H+ W+H+EL FSA
Sbjct: 61  SMKMTVKNSMSVPFHSDIPNFTMTPQNVTVLNPTILVNFIYPFGLPLHAGWIHIELSFSA 120

Query: 168 QVSYIVNRWRSKPRLLEIYCDHLWLRINDSTPNFDKTKCRVDL 211
           +VSY++NRW SKPR +EIYC+H   +I DS PNF   +C VDL
Sbjct: 121 KVSYLLNRWASKPRWMEIYCNHFRFKIGDSMPNFQNIECLVDL 163

[Close]

BLAST of CsGy1G013990 vs. TrEMBL
Match: tr|A0A1S3CGS4|A0A1S3CGS4_CUCME (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103500718 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.1e-55
Identity = 114/181 (62.98%), Postives = 142/181 (78.45%), Query Frame = 0


Query: 30  TKRTRIIRIIGRSLLSVIIFLSVAIITCWLVVFPRTPRLMVETSKVTAHGSTNRHLNATI 89
           TKRTR+IR++GRSLL VI  +++ +I CWLVV P+TPRL+VET KV  H ST   LNATI
Sbjct: 13  TKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLNATI 72

Query: 90  VFYIKSYNPNKKASIHMDSVKMIVSDYMGLPFHSTIPTFTLMPRNEMVFNSTVRVNFMYP 149
            F +KSYNPNK+ASIHMD ++MIV D MG+ F S IP+FTL PRN+ V  S V+VNF YP
Sbjct: 73  AFTVKSYNPNKRASIHMDYMRMIV-DNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYP 132

Query: 150 FGRPVHSDWVHLELRFSAQVSYIVNRWRSKPRLLEIYCDHLWLRINDSTPNFDKTKCRVD 209
           FG   +++ ++ EL+FSA+VSY V +W SKPRLLEIYC+HL L+INDST  FD TKC+VD
Sbjct: 133 FG---YTEEINPELQFSAEVSYSVEKWMSKPRLLEIYCNHLLLKINDST-TFDNTKCKVD 188

Query: 210 L 211
           L
Sbjct: 193 L 188

The following BLAST results are available for this feature:

BLAST of CsGy1G013990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64863.1	2.1e-115	100.00	hypothetical protein Csa_1G132730 [Cucumis sativus]	[more]
XP_008462391.1	2.2e-96	85.31	PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]	[more]
XP_011648453.1	2.1e-78	100.00	PREDICTED: uncharacterized protein LOC105434468 [Cucumis sativus]	[more]
XP_011654120.1	1.3e-67	64.25	PREDICTED: uncharacterized protein LOC105435303 [Cucumis sativus] >KGN64864.1 hy...	[more]
XP_023520091.1	2.9e-56	59.72	uncharacterized protein At1g08160-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G013990 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22870.1	7.3e-09	27.32	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G08160.1	3.6e-08	26.38	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of CsGy1G013990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VZ13\|Y1816_ARATH	6.5e-07	26.38	Uncharacterized protein At1g08160 OS=Arabidopsis thaliana OX=3702 GN=At1g08160 P...	[more]

BLAST of CsGy1G013990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSU5\|A0A0A0LSU5_CUCSA	1.4e-115	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132730 PE=4 SV=1	[more]
tr\|A0A1S3CGU2\|A0A1S3CGU2_CUCME	1.5e-96	85.31	uncharacterized protein At1g08160-like OS=Cucumis melo OX=3656 GN=LOC103500758 P...	[more]
tr\|A0A0A0LV68\|A0A0A0LV68_CUCSA	8.4e-68	64.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132740 PE=4 SV=1	[more]
tr\|A0A1S3CGV1\|A0A1S3CGV1_CUCME	2.8e-55	61.96	uncharacterized protein LOC103500736 OS=Cucumis melo OX=3656 GN=LOC103500736 PE=...	[more]
tr\|A0A1S3CGS4\|A0A1S3CGS4_CUCME	8.1e-55	62.98	protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103500718 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G013990.1	CsGy1G013990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 93..176 e-value: 1.1E-6 score: 29.0
None	No IPR available	PANTHER	PTHR31852:SF5	GB\|AAF18257.1	coord: 29..210
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 29..210

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G013990	Cla001046	Watermelon (97103) v1	cgybwmB047
CsGy1G013990	Csa1G132730	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G013990	MELO3C004856	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G013990	ClCG01G013920	Watermelon (Charleston Gray)	cgybwcgB014
CsGy1G013990	CSPI01G14000	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G013990	CmaCh12G008110	Cucurbita maxima (Rimu)	cgybcmaB058
CsGy1G013990	CmaCh13G002650	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G013990	CmoCh13G002720	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G013990	CmoCh12G008200	Cucurbita moschata (Rifu)	cgybcmoB054
CsGy1G013990	Lsi03G000610	Bottle gourd (USVL1VR-Ls)	cgyblsiB041
CsGy1G013990	Cp4.1LG20g07350	Cucurbita pepo (Zucchini)	cgybcpeB082
CsGy1G013990	Cp4.1LG07g06710	Cucurbita pepo (Zucchini)	cgybcpeB142
CsGy1G013990	MELO3C035547.2	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G013990	CsaV3_1G014180	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G013990	Bhi08G000113	Wax gourd	cgybwgoB046
CsGy1G013990	Carg23700	Silver-seed gourd	carcgybB0180

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G013990	Cucurbita maxima (Rimu)	cgybcmaB123
CsGy1G013990	Cucurbita moschata (Rifu)	cgybcmoB113
CsGy1G013990	Watermelon (Charleston Gray)	cgybwcgB027
CsGy1G013990	Watermelon (97103) v1	cgybwmB067
CsGy1G013990	Watermelon (97103) v2	cgybwmbB003
CsGy1G013990	Watermelon (97103) v2	cgybwmbB026