MELO3C003728 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003728
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	LYR motif-containing 2
Location	chr4 : 3629819 .. 3630857 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCAATATCAAAATCGGTCTTCCGTCGTTGAATCCTCAAAGAAATCGGAACCGAACGACAGAAATGATTATACCTCCGATTGAATCAAGCAGGGAATTCGCTTCATTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTCATCATTAAGGTAATTTCCTACATTCTCGAAGAAATTTACATTGTGCCCTAGTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNTCTCGAAGAAATTTACATTGTTGCCCTAGTTTTTTTTTTTAATTTAGTTCATACAACTCTTCAAAGAATTATTTCGATAATAAATCCTAATCTGCCTATGATTTCTGCACTGAACTGTTTGAATTTGTGATTATGAATGATTGGTTTTGGCATAGGAAAGAGAAATCGCGATGGTCTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAATAGCTCGGAAAGCACCTGTTGATGGTCGAGGTAAAGCTTTGTTTAATGGGATTTTATAATGACTTTGTGTTGTGATTGTGGAAATTTCATGAATTGGATTTGATGATAAGAGTGTTTTTGGAACAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGAGATTGAAGCAATTAGATGAGATGTTGGATATGCAAGGCCATTAACTAGAGATCTTTCTTTTCTTTCTTTTTTTATTAATTTTGATTATTGGGAGTTAAGTTTTTCTCCAATCATTTTGGAGTGTCTCATAGAAAGGAATGTTGTTTTAGGGGAAGGATATGAGTTTGGTTTAGGGCTTATCTTCAAGTTATTGTAATCAAATTGTGATTAAGGTACAAAGGAGTTATTAATTCCACTTCCCACATTATTTGTATCAGTTTGATTTTTATGTTAGGTTTTGAAATAAGAAACTGAAATCATCTAAAATTGAGATGAATATGTGGGATTATTGACTGAGACCCAA

mRNA sequence

ACTCAATATCAAAATCGGTCTTCCGTCGTTGAATCCTCAAAGAAATCGGAACCGAACGACAGAAATGATTATACCTCCGATTGAATCAAGCAGGGAATTCGCTTCATTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTCATCATTAAGGAAAGAGAAATCGCGATGGTCTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAATAGCTCGGAAAGCACCTGTTGATGGTCGAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGAGATTGAAGCAATTAGATGAGATGTTGGATATGCAAGGCCATTAACTAGAGATCTTTCTTTTCTTTCTTTTTTTATTAATTTTGATTATTGGGAGTTAAGTTTTTCTCCAATCATTTTGGAGTGTCTCATAGAAAGGAATGTTGTTTTAGGGGAAGGATATGAGTTTGGTTTAGGGCTTATCTTCAAGTTATTGTAATCAAATTGTGATTAAGGTACAAAGGAGTTATTAATTCCACTTCCCACATTATTTGTATCAGTTTGATTTTTATGTTAGGTTTTGAAATAAGAAACTGAAATCATCTAAAATTGAGATGAATATGTGGGATTATTGACTGAGACCCAA

Coding sequence (CDS)

ATGGTCTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAATAGCTCGGAAAGCACCTGTTGATGGTCGAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGAGATTGAAGCAATTAGATGAGATGTTGGATATGCAAGGCCATTAA

Protein sequence

MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH*

Homology

[Close]

BLAST of MELO3C003728 vs. TrEMBL
Match: A0A0A0LGK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G874410 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.4e-27
Identity = 67/81 (82.72%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQ             DELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQ-------------DELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 68

[Close]

BLAST of MELO3C003728 vs. TrEMBL
Match: M5XJM7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024578mg PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.4e-25
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          M  + DL++F+LRARVLKLYRQ LRI R++PVD R ELR  +R+E+E NR CNDRQ+IRF
Sbjct: 1  MALALDLQDFLLRARVLKLYRQALRITRRSPVDARGELRSTIRQELENNRHCNDRQRIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
           LSEG+ERLK+LDEMLDMQGH
Sbjct: 61 FLSEGLERLKRLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728 vs. TrEMBL
Match: A0A103XDE9_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_025992 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-24
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MV S DL+ FILRARVLKLYRQ LRIA++APV  R EL   +R+EME NR CND+Q+IR+
Sbjct: 1  MVVSFDLQTFILRARVLKLYRQALRIAKRAPVPSRGELMQTIRQEMENNRACNDKQRIRY 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
          L+SEG+ERLK LDEMLDMQGH
Sbjct: 61 LISEGMERLKGLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728 vs. TrEMBL
Match: A0A151RQG9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_033710 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.6e-24
Identity = 54/76 (71.05%), Postives = 67/76 (88.16%), Query Frame = 1


Query: 6  DLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEG 65
          DL++F+LRARVL+LYRQ LR+A +AP   RDELR  +REEME NR CND+Q+IR+L+SEG
Sbjct: 2  DLQDFLLRARVLRLYRQALRVAGRAPSSARDELRQTIREEMENNRNCNDKQRIRYLISEG 61

Query: 66 IERLKQLDEMLDMQGH 82
          +ERLK+LDEMLDMQGH
Sbjct: 62 LERLKRLDEMLDMQGH 77

[Close]

BLAST of MELO3C003728 vs. TrEMBL
Match: W9RMC8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014312 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.6e-24
Identity = 57/81 (70.37%), Postives = 65/81 (80.25%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          M  S DL++FILRARVLKLYRQ LR  R+APV  R ELR  +R+EME NR CND+QKIRF
Sbjct: 1  MALSFDLQDFILRARVLKLYRQALRTTRRAPVHARAELRQTIRQEMENNRNCNDKQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
           +SEG+ERLK L EMLDMQGH
Sbjct: 61 FISEGLERLKDLGEMLDMQGH 81

[Close]

BLAST of MELO3C003728 vs. TAIR10
Match: AT1G76065.1 (AT1G76065.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-26
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 1


Query: 6  DLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEG 65
          DL+ FILRARVLKLYRQ L+IA +APV  R EL+  +R+EMEKNR CND+QKIR+L+SEG
Sbjct: 5  DLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYLISEG 64

Query: 66 IERLKQLDEMLDMQGH 82
          +ER+K LDEMLDMQGH
Sbjct: 65 LERIKGLDEMLDMQGH 80

[Close]

BLAST of MELO3C003728 vs. NCBI nr
Match: gi|659132917|ref|XP_008466455.1| (PREDICTED: uncharacterized protein LOC103503854 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 1.0e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
          LLSEGIERLKQLDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728 vs. NCBI nr
Match: gi|449437174|ref|XP_004136367.1| (PREDICTED: LYR motif-containing protein 2 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728 vs. NCBI nr
Match: gi|700204931|gb|KGN60064.1| (hypothetical protein Csa_3G874410 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-27
Identity = 67/81 (82.72%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQ             DELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQ-------------DELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 68

[Close]

BLAST of MELO3C003728 vs. NCBI nr
Match: gi|645228886|ref|XP_008221204.1| (PREDICTED: uncharacterized protein LOC103321195 [Prunus mume])

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-25
Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          M  + DL++F+LRARVLKLYRQ LRI R+APVD R ELR  +R+E+E NR CNDRQ+IRF
Sbjct: 1  MALALDLQDFLLRARVLKLYRQALRITRRAPVDARGELRSTIRQELENNRHCNDRQRIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
           LSEG+ERLK+LDEMLDMQGH
Sbjct: 61 FLSEGLERLKRLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728 vs. NCBI nr
Match: gi|596245317|ref|XP_007224542.1| (hypothetical protein PRUPE_ppa024578mg [Prunus persica])

HSP 1 Score: 121.3 bits (303), Expect = 7.8e-25
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          M  + DL++F+LRARVLKLYRQ LRI R++PVD R ELR  +R+E+E NR CNDRQ+IRF
Sbjct: 1  MALALDLQDFLLRARVLKLYRQALRITRRSPVDARGELRSTIRQELENNRHCNDRQRIRF 60

Query: 61 LLSEGIERLKQLDEMLDMQGH 82
           LSEG+ERLK+LDEMLDMQGH
Sbjct: 61 FLSEGLERLKRLDEMLDMQGH 81

The following BLAST results are available for this feature:

BLAST of MELO3C003728 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGK2_CUCSA	4.4e-27	82.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G874410 PE=3 SV=1	[more]
M5XJM7_PRUPE	5.4e-25	70.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024578mg PE=3 SV=1	[more]
A0A103XDE9_CYNCS	2.7e-24	71.60	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_025992 PE=3 ...	[more]
A0A151RQG9_CAJCA	4.6e-24	71.05	Uncharacterized protein OS=Cajanus cajan GN=KK1_033710 PE=3 SV=1	[more]
W9RMC8_9ROSA	4.6e-24	70.37	Uncharacterized protein OS=Morus notabilis GN=L484_014312 PE=3 SV=1	[more]

BLAST of MELO3C003728 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76065.1	1.2e-26	72.37	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of MELO3C003728 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132917\|ref\|XP_008466455.1\|	1.0e-37	100.00	PREDICTED: uncharacterized protein LOC103503854 [Cucumis melo]	[more]
gi\|449437174\|ref\|XP_004136367.1\|	1.2e-36	97.53	PREDICTED: LYR motif-containing protein 2 [Cucumis sativus]	[more]
gi\|700204931\|gb\|KGN60064.1\|	6.3e-27	82.72	hypothetical protein Csa_3G874410 [Cucumis sativus]	[more]
gi\|645228886\|ref\|XP_008221204.1\|	3.5e-25	71.60	PREDICTED: uncharacterized protein LOC103321195 [Prunus mume]	[more]
gi\|596245317\|ref\|XP_007224542.1\|	7.8e-25	70.37	hypothetical protein PRUPE_ppa024578mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR
IPR026868	Lyrm2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU45005	melon EST collection version 4.0	transcribed_cluster
MU53240	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003728T1	MELO3C003728T1	mRNA
MELO3C003728T2	MELO3C003728T2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU45005	MU45005	transcribed_cluster
MU53240	MU53240	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C003728	Csa3G874410	Cucumber (Chinese Long) v2	cumeB222
MELO3C003728	Cla007422	Watermelon (97103) v1	mewmB369
MELO3C003728	ClCG05G015420	Watermelon (Charleston Gray)	mewcgB332
MELO3C003728	Cla97C05G096470	Watermelon (97103) v2	mewmbB333
MELO3C003728	CSPI03G43670	Wild cucumber (PI 183967)	cpimeB215
MELO3C003728	Cucsa.343250	Cucumber (Gy14) v1	cgymeB559
MELO3C003728	CmaCh01G019910	Cucurbita maxima (Rimu)	cmameB424
MELO3C003728	CmaCh09G000860	Cucurbita maxima (Rimu)	cmameB032
MELO3C003728	CmoCh09G000840	Cucurbita moschata (Rifu)	cmomeB021
MELO3C003728	Lsi04G017780	Bottle gourd (USVL1VR-Ls)	lsimeB311
MELO3C003728	Cp4.1LG06g00370	Cucurbita pepo (Zucchini)	cpemeB726
MELO3C003728	CsGy3G041190	Cucumber (Gy14) v2	cgybmeB185
MELO3C003728	Carg17217	Silver-seed gourd	carmeB0928
MELO3C003728	CsaV3_3G046120	Cucumber (Chinese Long) v3	cucmeB219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003728	Cucurbita moschata (Rifu)	cmomeB414
MELO3C003728	Cucurbita pepo (Zucchini)	cpemeB516
MELO3C003728	Silver-seed gourd	carmeB0106