Cla97C05G096470 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G096470
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	LYR family of Fe/S cluster biogenesis protein
Location	Cla97Chr05 : 25297621 .. 25298011 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTCTCCCTTGATTTACAGGAATTTATTCTCCGAGCAAGAGTGTTGAAACTGTATAGGCAGGCTTTAAGAACTGCTCGCAAAGCTCCTGTTCACTCTCGAGGTTAAGCCTTAAGCATTTTTCTCGTCGTGATCTTCAAAATTTCGTCTGAATTTACACTGCCTTTAATTGGATTAGGTTTTGTTTTTGTCTATATTGCTTGTTCTGTGTGCTTAAAGCCTTGAGAATGTGTGTTTTGAAACAGAGGAACTGAGGAATACGATGAGACAAGAAATGGAGAACAACCGCAGCTGCAACGACAGACAGAAAATAAGATTTTTGGTGAGTGAAGGAATAGAGAGATTGAAGCGTTTAGATGAGATGTTGGATATGCAGGGTCATTCATAA

mRNA sequence

ATGGTTCTCTCCCTTGATTTACAGGAATTTATTCTCCGAGCAAGAGTGTTGAAACTGTATAGGCAGGCTTTAAGAACTGCTCGCAAAGCTCCTGTTCACTCTCGAGAGGAACTGAGGAATACGATGAGACAAGAAATGGAGAACAACCGCAGCTGCAACGACAGACAGAAAATAAGATTTTTGGTGAGTGAAGGAATAGAGAGATTGAAGCGTTTAGATGAGATGTTGGATATGCAGGGTCATTCATAA

Coding sequence (CDS)

ATGGTTCTCTCCCTTGATTTACAGGAATTTATTCTCCGAGCAAGAGTGTTGAAACTGTATAGGCAGGCTTTAAGAACTGCTCGCAAAGCTCCTGTTCACTCTCGAGAGGAACTGAGGAATACGATGAGACAAGAAATGGAGAACAACCGCAGCTGCAACGACAGACAGAAAATAAGATTTTTGGTGAGTGAAGGAATAGAGAGATTGAAGCGTTTAGATGAGATGTTGGATATGCAGGGTCATTCATAA

Protein sequence

MVLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRFLVSEGIERLKRLDEMLDMQGHS

Homology

[Close]

BLAST of Cla97C05G096470 vs. NCBI nr
Match: XP_023535371.1 (uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372.1 uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.3 bits (360), Expect = 3.7e-31
Identity = 74/82 (90.24%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MVLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRF 60
          MVL+LDLQEFILRARVLKLYRQALRT RKAPVH+REELR+T+RQEMENNRSC+DRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKVRF 60

Query: 61 LVSEGIERLKRLDEMLDMQGHS 83
          L+SEGIERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

[Close]

BLAST of Cla97C05G096470 vs. NCBI nr
Match: XP_022936861.1 (uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 uncharacterized protein LOC111443321 [Cucurbita moschata])

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 73/82 (89.02%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MVLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRF 60
          MVL+LDLQEFILRARVLKLYRQALRT RKAPVH+REELR+T+RQEMENNR C+DRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LVSEGIERLKRLDEMLDMQGHS 83
          L+SEGIERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

[Close]

BLAST of Cla97C05G096470 vs. NCBI nr
Match: XP_022975831.1 (uncharacterized protein LOC111476418 [Cucurbita maxima] >XP_022975832.1 uncharacterized protein LOC111476418 [Cucurbita maxima])

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-30
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MVLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRF 60
          MVL+LDLQEFILRARVLKLYRQALRT RKAPVH+REELR+T+RQEMENNRSC+DRQKIRF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKIRF 60

Query: 61 LVSEGIERLKRLDEMLDMQGHS 83
          L+SEG ERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGRERLKRLDEMLDMQGHS 82

[Close]

BLAST of Cla97C05G096470 vs. NCBI nr
Match: XP_022140612.1 (uncharacterized protein LOC111011218 [Momordica charantia] >XP_022140617.1 uncharacterized protein LOC111011218 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 5.4e-30
Identity = 71/82 (86.59%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MVLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRF 60
          MV+SLDL EFILRARVLKL+RQALRTARKAPVH+REELR+T+RQEMENNRSCND+QK+R+
Sbjct: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60

Query: 61 LVSEGIERLKRLDEMLDMQGHS 83
          L+SEGIE LKRLDEMLDMQGHS
Sbjct: 61 LISEGIESLKRLDEMLDMQGHS 82

[Close]

BLAST of Cla97C05G096470 vs. NCBI nr
Match: XP_022941069.1 (uncharacterized protein LOC111446466 [Cucurbita moschata])

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 70/81 (86.42%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MVLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRF 60
          MVLSLDLQEFILRARVLKLYR ALRTA+KAPVH+REELR+T+RQEMENNR CN+RQK+RF
Sbjct: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERQKVRF 60

Query: 61 LVSEGIERLKRLDEMLDMQGH 82
          L+SEGIERLKRL+EMLDMQG+
Sbjct: 61 LLSEGIERLKRLEEMLDMQGN 81

[Close]

BLAST of Cla97C05G096470 vs. TrEMBL
Match: tr|W9RMC8|W9RMC8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_014312 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.7e-27
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MVLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRF 60
          M LS DLQ+FILRARVLKLYRQALRT R+APVH+R ELR T+RQEMENNR+CND+QKIRF
Sbjct: 1  MALSFDLQDFILRARVLKLYRQALRTTRRAPVHARAELRQTIRQEMENNRNCNDKQKIRF 60

Query: 61 LVSEGIERLKRLDEMLDMQGHS 83
           +SEG+ERLK L EMLDMQGHS
Sbjct: 61 FISEGLERLKDLGEMLDMQGHS 82

[Close]

BLAST of Cla97C05G096470 vs. TrEMBL
Match: tr|A0A2I4HB15|A0A2I4HB15_9ROSI (LYR motif-containing protein 2-like OS=Juglans regia OX=51240 GN=LOC109015331 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-26
Identity = 64/81 (79.01%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MVLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRF 60
          MVLS DLQ+FI+RARVLKLYR ALRTAR+AP H+R ELR T+RQEME NR+CND+Q+IRF
Sbjct: 1  MVLSFDLQDFIIRARVLKLYRNALRTARRAPTHARAELRQTIRQEMEINRNCNDKQRIRF 60

Query: 61 LVSEGIERLKRLDEMLDMQGH 82
          L+SEG+ERLK LDEMLDMQGH
Sbjct: 61 LISEGLERLKSLDEMLDMQGH 81

[Close]

BLAST of Cla97C05G096470 vs. TrEMBL
Match: tr|A0A2G9G8A5|A0A2G9G8A5_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25963 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.9e-26
Identity = 64/81 (79.01%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MVLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRF 60
          MVLSLDLQ+F+LRARVLKLYRQALR +R+AP  SR+ELR  +RQEMENNR+CNDRQ+IRF
Sbjct: 1  MVLSLDLQDFLLRARVLKLYRQALRISRRAPGDSRDELRRIVRQEMENNRTCNDRQRIRF 60

Query: 61 LVSEGIERLKRLDEMLDMQGH 82
          L+S+G+ERLKRLDE LDMQGH
Sbjct: 61 LISDGLERLKRLDETLDMQGH 81

[Close]

BLAST of Cla97C05G096470 vs. TrEMBL
Match: tr|A9P9V6|A9P9V6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G181400v3 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 9.0e-26
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MVLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRF 60
          MVLS  LQ+FILRARVLKLYRQALRT R+AP  +R +L+ T+RQEMENNR CND+Q+IRF
Sbjct: 1  MVLSFGLQDFILRARVLKLYRQALRTTRRAPGDARADLKQTIRQEMENNRHCNDKQRIRF 60

Query: 61 LVSEGIERLKRLDEMLDMQGHS 83
          L+SEG+ERLKRLDEMLDMQGHS
Sbjct: 61 LISEGLERLKRLDEMLDMQGHS 82

[Close]

BLAST of Cla97C05G096470 vs. TrEMBL
Match: tr|A0A2I4DLU4|A0A2I4DLU4_9ROSI (LYR motif-containing protein 2 OS=Juglans regia OX=51240 GN=LOC108981422 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 9.0e-26
Identity = 63/81 (77.78%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MVLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRF 60
          MVLS DLQ+FI+RARVLKLYR ALRTA++AP H+R ELR T+RQEME NR+CND+Q+IRF
Sbjct: 1  MVLSFDLQDFIIRARVLKLYRNALRTAQRAPTHARAELRQTIRQEMEINRNCNDKQRIRF 60

Query: 61 LVSEGIERLKRLDEMLDMQGH 82
          L+SEG+ERLK LDEMLDMQGH
Sbjct: 61 LISEGLERLKSLDEMLDMQGH 81

[Close]

BLAST of Cla97C05G096470 vs. Swiss-Prot
Match: sp|Q5RES3|LYRM2_PONAB (LYR motif-containing protein 2 OS=Pongo abelii OX=9601 GN=LYRM2 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 27/74 (36.49%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 4  SLDLQEFILRARVLKLYRQALRTARKAPVHS-REELRNTMRQEMENNRSCNDRQKIRFLV 63
          +L L++F+ R +VL LYR+ L+T R+ P  S R+ L++  R+E + N+S  +   IR ++
Sbjct: 10 TLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFKRNKSATEEDTIRMMI 69

Query: 64 SEGIERLKRLDEML 77
          ++G  +LK L++ L
Sbjct: 70 TQGNMQLKELEKTL 83

[Close]

BLAST of Cla97C05G096470 vs. Swiss-Prot
Match: sp|Q9NU23|LYRM2_HUMAN (LYR motif-containing protein 2 OS=Homo sapiens OX=9606 GN=LYRM2 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.6e-04
Identity = 27/74 (36.49%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 4  SLDLQEFILRARVLKLYRQALRTARKAPVHS-REELRNTMRQEMENNRSCNDRQKIRFLV 63
          +L L++F+ R +VL LYR+ L+T R+ P  S R+ L++  R+E   N+S  +   IR ++
Sbjct: 10 TLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEEDTIRMMI 69

Query: 64 SEGIERLKRLDEML 77
          ++G  +LK L++ L
Sbjct: 70 TQGNMQLKELEKTL 83

[Close]

BLAST of Cla97C05G096470 vs. Swiss-Prot
Match: sp|Q8R033|LYRM2_MOUSE (LYR motif-containing protein 2 OS=Mus musculus OX=10090 GN=Lyrm2 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.9e-04
Identity = 27/74 (36.49%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 4  SLDLQEFILRARVLKLYRQALRTARKAPVHS-REELRNTMRQEMENNRSCNDRQKIRFLV 63
          +L L++F+ R +VL LYR+ LR  R+ P  S R+ L++  R+E + N+S  +   IR ++
Sbjct: 10 ALTLKQFMRRQQVLLLYRKILRAIRQVPSDSDRKYLQDWAREEFKRNKSATEEDTIRMMI 69

Query: 64 SEGIERLKRLDEML 77
          ++G  +LK L+  L
Sbjct: 70 TQGNMQLKELERTL 83

[Close]

BLAST of Cla97C05G096470 vs. Swiss-Prot
Match: sp|Q5RIM0|LYRM2_DANRE (LYR motif-containing protein 2 OS=Danio rerio OX=7955 GN=lyrm2 PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.7e-04
Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 4  SLDLQEFILRARVLKLYRQALRTARKAPVHS-REELRNTMRQEMENNRSCNDRQKIRFLV 63
          +L L++F+ R +VL LYR   RT R+ P  S R+ LR+  R E   N+S  D+  IR ++
Sbjct: 10 ALSLKQFLQRQKVLCLYRDLQRTIRRVPHESDRKYLRDWARDEFRRNKSNTDQDAIRMMI 69

Query: 64 SEGIERLKRLDEMLDMQG 81
          S+    L+ L   L + G
Sbjct: 70 SQAHNHLEELRRSLALAG 87

[Close]

BLAST of Cla97C05G096470 vs. TAIR10
Match: AT1G76065.1 (LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 117.5 bits (293), Expect = 4.0e-27
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 2  VLSLDLQEFILRARVLKLYRQALRTARKAPVHSREELRNTMRQEMENNRSCNDRQKIRFL 61
          ++ LDLQ FILRARVLKLYRQAL+ A +APVH R EL+ T+RQEME NR CND+QKIR+L
Sbjct: 1  MVQLDLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYL 60

Query: 62 VSEGIERLKRLDEMLDMQGH 82
          +SEG+ER+K LDEMLDMQGH
Sbjct: 61 ISEGLERIKGLDEMLDMQGH 80

The following BLAST results are available for this feature:

BLAST of Cla97C05G096470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535371.1	3.7e-31	90.24	uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372....	[more]
XP_022936861.1	1.1e-30	89.02	uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 unchar...	[more]
XP_022975831.1	1.8e-30	90.24	uncharacterized protein LOC111476418 [Cucurbita maxima] >XP_022975832.1 uncharac...	[more]
XP_022140612.1	5.4e-30	86.59	uncharacterized protein LOC111011218 [Momordica charantia] >XP_022140617.1 uncha...	[more]
XP_022941069.1	1.0e-28	86.42	uncharacterized protein LOC111446466 [Cucurbita moschata]	[more]

BLAST of Cla97C05G096470 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9RMC8\|W9RMC8_9ROSA	3.7e-27	80.49	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_014312 PE=3 SV=1	[more]
tr\|A0A2I4HB15\|A0A2I4HB15_9ROSI	3.1e-26	79.01	LYR motif-containing protein 2-like OS=Juglans regia OX=51240 GN=LOC109015331 PE...	[more]
tr\|A0A2G9G8A5\|A0A2G9G8A5_9LAMI	6.9e-26	79.01	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25963 P...	[more]
tr\|A9P9V6\|A9P9V6_POPTR	9.0e-26	78.05	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G181400v3 PE=...	[more]
tr\|A0A2I4DLU4\|A0A2I4DLU4_9ROSI	9.0e-26	77.78	LYR motif-containing protein 2 OS=Juglans regia OX=51240 GN=LOC108981422 PE=3 SV...	[more]

BLAST of Cla97C05G096470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5RES3\|LYRM2_PONAB	2.0e-04	36.49	LYR motif-containing protein 2 OS=Pongo abelii OX=9601 GN=LYRM2 PE=3 SV=1	[more]
sp\|Q9NU23\|LYRM2_HUMAN	2.6e-04	36.49	LYR motif-containing protein 2 OS=Homo sapiens OX=9606 GN=LYRM2 PE=1 SV=1	[more]
sp\|Q8R033\|LYRM2_MOUSE	5.9e-04	36.49	LYR motif-containing protein 2 OS=Mus musculus OX=10090 GN=Lyrm2 PE=3 SV=1	[more]
sp\|Q5RIM0\|LYRM2_DANRE	7.7e-04	37.18	LYR motif-containing protein 2 OS=Danio rerio OX=7955 GN=lyrm2 PE=3 SV=1	[more]

BLAST of Cla97C05G096470 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76065.1	4.0e-27	73.75	LYR family of Fe/S cluster biogenesis protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026868	Lyrm2
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G096470.1	Cla97C05G096470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..55
None	No IPR available	PANTHER	PTHR13675:SF0	LYR MOTIF-CONTAINING PROTEIN 2	coord: 2..81
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..70 e-value: 2.1E-16 score: 59.6
IPR026868	LYR motif-containing protein 2	PANTHER	PTHR13675	LYR MOTIF-CONTAINING PROTEIN 2	coord: 2..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G096470	Cla007422	Watermelon (97103) v1	wmwmbB207
Cla97C05G096470	Csa3G874410	Cucumber (Chinese Long) v2	cuwmbB221
Cla97C05G096470	MELO3C003728	Melon (DHL92) v3.5.1	mewmbB333
Cla97C05G096470	ClCG05G015420	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G096470	CSPI03G43670	Wild cucumber (PI 183967)	cpiwmbB227
Cla97C05G096470	Cucsa.343250	Cucumber (Gy14) v1	cgywmbB586
Cla97C05G096470	CmaCh01G019910	Cucurbita maxima (Rimu)	cmawmbB483
Cla97C05G096470	CmaCh09G000860	Cucurbita maxima (Rimu)	cmawmbB029
Cla97C05G096470	CmoCh09G000840	Cucurbita moschata (Rifu)	cmowmbB017
Cla97C05G096470	Lsi04G017780	Bottle gourd (USVL1VR-Ls)	lsiwmbB291
Cla97C05G096470	CsGy3G041190	Cucumber (Gy14) v2	cgybwmbB211
Cla97C05G096470	MELO3C003728.2	Melon (DHL92) v3.6.1	medwmbB320
Cla97C05G096470	Carg17217	Silver-seed gourd	carwmbB0995
Cla97C05G096470	CsaV3_3G046120	Cucumber (Chinese Long) v3	cucwmbB222

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G096470	Silver-seed gourd	carwmbB0108
Cla97C05G096470	Cucurbita moschata (Rifu)	cmowmbB464