CmoCh09G000840 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G000840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	LYR motif-containing 2
Location	Cmo_Chr09 : 383817 .. 384840 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAATCAGACATGGTTCGCTTCAGTTTAATCCGCAGTGGAGTCTTCCTTTGGCTTCTTAGGGTAAGTTCGAACATTCAAGAAGAATTTTACGTTTTCCTCTAGCTTCTATTTTCATATAGTTCTGCTCAGAAATGAATTCCATAATCCCGATCTGTCTGTGATTTCTGCGCTCTGCTGTTTGAATTTGCTATTCAACAAAATTTGGCTTTATTCTCCATCAATTTCTTTAAAATCTTTTGAGATAATAGTTTTTGACTGCGTTGCAAGAACTCAGGACGATCTAAACCTTTGTATCTTCAGCGCCGAGAATTCTCAATTTATTTGTTCTAGAAATTCCTCCACATTGGATTCTGATCGCTGGAAGATGTTTAATACATTCGAATTCTTTCGTTACCACTAACAATGTAAAAGGTTGCACAGGGGGAGAACTCGCCATGGTTCTCGCCCTTGATTTACAGGAATTTATTCTCCGAGCAAGAGTGTTGAAACTGTATAGGCAGGCTTTAAGAACTACTCGCAAAGCTCCTGTTCACGCTCGAGGTTAAGCTTTTGATTATGATCTTACATTGTTCTTTATGCATTTGAATTTTTCCCGCCTTCTCCGCATGAACCAAGCTTAAATTGGATTAGGCGTCGTGTTTAGTCGATTGTCTGTTCTGCGTGCTTAAAGTTCTGAGAATGTGTGCTTTGAAACAGAAGAACTGAGGCATACGATCAGACAAGAAATGGAAAACAACCGCGGCTGCAGTGATAGACAGAAGGTTAGATTTCTGCTCAGTGAAGGAATAGAGAGATTAAAGCGTTTAGATGAGATGTTGGATATGCAGGGCCATTCATAAAGAGAGTTTTTAAGTTAAAAGTTTTTCATCATCTTCCTCCTCAATCACTAACTGCTCGCTATTGGGATGAAGTGTCGTTTTAAATTTATGCTACTTTTGTATGATGATGAGAGTGAAAATATTTGGTTAATATTATGATCTTGTCATAATTTTCCATCAAATTAGTACGCCATGAAAGGTTG

mRNA sequence

ATTGAATCAGACATGGTTCGCTTCAGTTTAATCCGCAGTGGAGTCTTCCTTTGGCTTCTTAGGGTTGCACAGGGGGAGAACTCGCCATGGTTCTCGCCCTTGATTTACAGGAATTTATTCTCCGAGCAAGAGTGTTGAAACTGTATAGGCAGGCTTTAAGAACTACTCGCAAAGCTCCTGTTCACGCTCGAGAAGAACTGAGGCATACGATCAGACAAGAAATGGAAAACAACCGCGGCTGCAGTGATAGACAGAAGGTTAGATTTCTGCTCAGTGAAGGAATAGAGAGATTAAAGCGTTTAGATGAGATGTTGGATATGCAGGGCCATTCATAAAGAGAGTTTTTAAGTTAAAAGTTTTTCATCATCTTCCTCCTCAATCACTAACTGCTCGCTATTGGGATGAAGTGTCGTTTTAAATTTATGCTACTTTTGTATGATGATGAGAGTGAAAATATTTGGTTAATATTATGATCTTGTCATAATTTTCCATCAAATTAGTACGCCATGAAAGGTTG

Coding sequence (CDS)

ATGGTTCTCGCCCTTGATTTACAGGAATTTATTCTCCGAGCAAGAGTGTTGAAACTGTATAGGCAGGCTTTAAGAACTACTCGCAAAGCTCCTGTTCACGCTCGAGAAGAACTGAGGCATACGATCAGACAAGAAATGGAAAACAACCGCGGCTGCAGTGATAGACAGAAGGTTAGATTTCTGCTCAGTGAAGGAATAGAGAGATTAAAGCGTTTAGATGAGATGTTGGATATGCAGGGCCATTCATAA

Homology

[Close]

BLAST of CmoCh09G000840 vs. TrEMBL
Match: W9RMC8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014312 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-27
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60
          M L+ DLQ+FILRARVLKLYRQALRTTR+APVHAR ELR TIRQEMENNR C+D+QK+RF
Sbjct: 1  MALSFDLQDFILRARVLKLYRQALRTTRRAPVHARAELRQTIRQEMENNRNCNDKQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGHS 83
           +SEG+ERLK L EMLDMQGHS
Sbjct: 61 FISEGLERLKDLGEMLDMQGHS 82

[Close]

BLAST of CmoCh09G000840 vs. TrEMBL
Match: M5XJM7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024578mg PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 9.9e-27
Identity = 65/81 (80.25%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60
          M LALDLQ+F+LRARVLKLYRQALR TR++PV AR ELR TIRQE+ENNR C+DRQ++RF
Sbjct: 1  MALALDLQDFLLRARVLKLYRQALRITRRSPVDARGELRSTIRQELENNRHCNDRQRIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
           LSEG+ERLKRLDEMLDMQGH
Sbjct: 61 FLSEGLERLKRLDEMLDMQGH 81

[Close]

BLAST of CmoCh09G000840 vs. TrEMBL
Match: A9P9V6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17970g PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-26
Identity = 64/82 (78.05%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60
          MVL+  LQ+FILRARVLKLYRQALRTTR+AP  AR +L+ TIRQEMENNR C+D+Q++RF
Sbjct: 1  MVLSFGLQDFILRARVLKLYRQALRTTRRAPGDARADLKQTIRQEMENNRHCNDKQRIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGHS 83
          L+SEG+ERLKRLDEMLDMQGHS
Sbjct: 61 LISEGLERLKRLDEMLDMQGHS 82

[Close]

BLAST of CmoCh09G000840 vs. TrEMBL
Match: E0CQW2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00870 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.1e-25
Identity = 61/81 (75.31%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 1   MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60
           MVL LDLQ+F+LRARVLKLYRQALR   +AP HAR ELR T+RQEMENNR C+D+Q++RF
Sbjct: 60  MVLLLDLQDFLLRARVLKLYRQALRVAGRAPEHARAELRQTVRQEMENNRNCNDKQRIRF 119

Query: 61  LLSEGIERLKRLDEMLDMQGH 82
           L+SEG+ RLK LDEMLDMQGH
Sbjct: 120 LISEGLARLKGLDEMLDMQGH 140

[Close]

BLAST of CmoCh09G000840 vs. TrEMBL
Match: A0A067KAL8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13091 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.4e-25
Identity = 62/82 (75.61%), Postives = 73/82 (89.02%), Query Frame = 1


Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60
          MVL+ DLQ+FILRARVLKLYRQALRT R+AP HAR +L+  IRQEMENNR C D+Q+VRF
Sbjct: 1  MVLSFDLQDFILRARVLKLYRQALRTARRAPDHARVDLKQIIRQEMENNRNCKDKQRVRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGHS 83
          L+SEG+ERLK LDEMLDMQG++
Sbjct: 61 LISEGLERLKGLDEMLDMQGNA 82

[Close]

BLAST of CmoCh09G000840 vs. TAIR10
Match: AT1G76065.1 (AT1G76065.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 115.2 bits (287), Expect = 2.0e-26
Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 1


Query: 2  VLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRFL 61
          ++ LDLQ FILRARVLKLYRQAL+   +APVH R EL+ T+RQEME NR C+D+QK+R+L
Sbjct: 1  MVQLDLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYL 60

Query: 62 LSEGIERLKRLDEMLDMQGH 82
          +SEG+ER+K LDEMLDMQGH
Sbjct: 61 ISEGLERIKGLDEMLDMQGH 80

[Close]

BLAST of CmoCh09G000840 vs. NCBI nr
Match: gi|703112453|ref|XP_010100121.1| (hypothetical protein L484_014312 [Morus notabilis])

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-27
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60
          M L+ DLQ+FILRARVLKLYRQALRTTR+APVHAR ELR TIRQEMENNR C+D+QK+RF
Sbjct: 1  MALSFDLQDFILRARVLKLYRQALRTTRRAPVHARAELRQTIRQEMENNRNCNDKQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGHS 83
           +SEG+ERLK L EMLDMQGHS
Sbjct: 61 FISEGLERLKDLGEMLDMQGHS 82

[Close]

BLAST of CmoCh09G000840 vs. NCBI nr
Match: gi|645228886|ref|XP_008221204.1| (PREDICTED: uncharacterized protein LOC103321195 [Prunus mume])

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-27
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60
          M LALDLQ+F+LRARVLKLYRQALR TR+APV AR ELR TIRQE+ENNR C+DRQ++RF
Sbjct: 1  MALALDLQDFLLRARVLKLYRQALRITRRAPVDARGELRSTIRQELENNRHCNDRQRIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
           LSEG+ERLKRLDEMLDMQGH
Sbjct: 61 FLSEGLERLKRLDEMLDMQGH 81

[Close]

BLAST of CmoCh09G000840 vs. NCBI nr
Match: gi|596245317|ref|XP_007224542.1| (hypothetical protein PRUPE_ppa024578mg [Prunus persica])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 65/81 (80.25%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60
          M LALDLQ+F+LRARVLKLYRQALR TR++PV AR ELR TIRQE+ENNR C+DRQ++RF
Sbjct: 1  MALALDLQDFLLRARVLKLYRQALRITRRSPVDARGELRSTIRQELENNRHCNDRQRIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
           LSEG+ERLKRLDEMLDMQGH
Sbjct: 61 FLSEGLERLKRLDEMLDMQGH 81

[Close]

BLAST of CmoCh09G000840 vs. NCBI nr
Match: gi|449437174|ref|XP_004136367.1| (PREDICTED: LYR motif-containing protein 2 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 1


Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60
          MV + DL+EFILRARVLKLYRQ LRT RKAPV  R+ELRH +R+EME NR C+DRQK+RF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLKRLDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of CmoCh09G000840 vs. NCBI nr
Match: gi|224129442|ref|XP_002320587.1| (hypothetical protein POPTR_0014s17970g [Populus trichocarpa])

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-26
Identity = 64/82 (78.05%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60
          MVL+  LQ+FILRARVLKLYRQALRTTR+AP  AR +L+ TIRQEMENNR C+D+Q++RF
Sbjct: 1  MVLSFGLQDFILRARVLKLYRQALRTTRRAPGDARADLKQTIRQEMENNRHCNDKQRIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGHS 83
          L+SEG+ERLKRLDEMLDMQGHS
Sbjct: 61 LISEGLERLKRLDEMLDMQGHS 82

The following BLAST results are available for this feature:

BLAST of CmoCh09G000840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G000840 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RMC8_9ROSA	1.2e-27	80.49	Uncharacterized protein OS=Morus notabilis GN=L484_014312 PE=3 SV=1	[more]
M5XJM7_PRUPE	9.9e-27	80.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024578mg PE=3 SV=1	[more]
A9P9V6_POPTR	2.9e-26	78.05	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17970g PE=2 SV=1	[more]
E0CQW2_VITVI	4.1e-25	75.31	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00870 PE=3 SV=...	[more]
A0A067KAL8_JATCU	5.4e-25	75.61	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13091 PE=3 SV=1	[more]

BLAST of CmoCh09G000840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76065.1	2.0e-26	70.00	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of CmoCh09G000840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703112453\|ref\|XP_010100121.1\|	1.7e-27	80.49	hypothetical protein L484_014312 [Morus notabilis]	[more]
gi\|645228886\|ref\|XP_008221204.1\|	6.3e-27	81.48	PREDICTED: uncharacterized protein LOC103321195 [Prunus mume]	[more]
gi\|596245317\|ref\|XP_007224542.1\|	1.4e-26	80.25	hypothetical protein PRUPE_ppa024578mg [Prunus persica]	[more]
gi\|449437174\|ref\|XP_004136367.1\|	3.2e-26	80.25	PREDICTED: LYR motif-containing protein 2 [Cucumis sativus]	[more]
gi\|224129442\|ref\|XP_002320587.1\|	4.1e-26	78.05	hypothetical protein POPTR_0014s17970g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR
IPR026868	Lyrm2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G000840.1	CmoCh09G000840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..70 score: 2.7
IPR026868	LYR motif-containing protein 2	PANTHER	PTHR13675	FAMILY NOT NAMED	coord: 1..82 score: 8.9
None	No IPR available	PANTHER	PTHR13675:SF0	LYR MOTIF-CONTAINING PROTEIN 2	coord: 1..82 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G000840	Cucsa.343250	Cucumber (Gy14) v1	cgycmoB0920
CmoCh09G000840	CmaCh09G000860	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G000840	CmaCh01G019910	Cucurbita maxima (Rimu)	cmacmoB435
CmoCh09G000840	Cla007422	Watermelon (97103) v1	cmowmB021
CmoCh09G000840	Csa3G874410	Cucumber (Chinese Long) v2	cmocuB008
CmoCh09G000840	MELO3C003728	Melon (DHL92) v3.5.1	cmomeB021
CmoCh09G000840	ClCG05G015420	Watermelon (Charleston Gray)	cmowcgB018
CmoCh09G000840	CSPI03G43670	Wild cucumber (PI 183967)	cmocpiB008
CmoCh09G000840	Lsi04G017780	Bottle gourd (USVL1VR-Ls)	cmolsiB012
CmoCh09G000840	Cp4.1LG06g00370	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G000840	MELO3C003728.2	Melon (DHL92) v3.6.1	cmomedB020
CmoCh09G000840	CsaV3_3G046120	Cucumber (Chinese Long) v3	cmocucB0012
CmoCh09G000840	Cla97C05G096470	Watermelon (97103) v2	cmowmbB017
CmoCh09G000840	CsGy3G041190	Cucumber (Gy14) v2	cgybcmoB260
CmoCh09G000840	Carg17217	Silver-seed gourd	carcmoB1261

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G000840	CmoCh01G020490	Cucurbita moschata (Rifu)	cmocmoB017

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G000840	Cucurbita pepo (Zucchini)	cmocpeB011
CmoCh09G000840	Cucurbita pepo (Zucchini)	cmocpeB020
CmoCh09G000840	Silver-seed gourd	carcmoB0144
CmoCh09G000840	Silver-seed gourd	carcmoB0190
CmoCh09G000840	Cucurbita moschata (Rifu)	cmocmoB033
CmoCh09G000840	Cucurbita maxima (Rimu)	cmacmoB755