CSPI03G43670 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G43670
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	LYR family of Fe/S cluster biogenesis protein
Location	Chr3 : 37492601 .. 37493471 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCTGCGCTGAACTGTTTGGATTTGTGGTTAAAAATGACTGGTTTTGGCATAGGAAAGAGAGATCGCGATGGTTTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCGCCTGTTGATGGTCGAGGTAAAGCTGTGTTTATTAATGGGATTTTGTAATGACTTTGTGTTGTGATTATTGAAATTTCATCTAATTGGATTAGATGGTAACAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGCGATTGAAGCGTCTAGATGAGATGTTGGATATGCAAGGCCATTAGATTAGATAGAGAGCAGAGAGCTTTCTTTCTTTCTTTTACTCTGTATCATTTTGGAGTATTTAGAAAATTCCTTTTTGGATTCAGCCTTTTGAGTTATTATAATTTCGTACATTTTTTCTGATTCTCTTTCTCAGTAATTATTTCTGATTACGTACCTTTTTGTATGACATTTAAGAGAGGGAA

mRNA sequence

ATGGTTTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCGCCTGTTGATGGTCGAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGCGATTGAAGCGTCTAGATGAGATGTTGGATATGCAAGGCCATTAG

Coding sequence (CDS)

ATGGTTTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCGCCTGTTGATGGTCGAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGCGATTGAAGCGTCTAGATGAGATGTTGGATATGCAAGGCCATTAG

Homology

[Close]

BLAST of CSPI03G43670 vs. TrEMBL
Match: A0A0A0LGK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G874410 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-26
Identity = 68/81 (83.95%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQ             DELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQ-------------DELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLKRLDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 68

[Close]

BLAST of CSPI03G43670 vs. TrEMBL
Match: A9P9V6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17970g PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-23
Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MV S  L++FILRARVLKLYRQ LRT R+AP D R +L+  +R+EME NR CND+Q+IRF
Sbjct: 1  MVLSFGLQDFILRARVLKLYRQALRTTRRAPGDARADLKQTIRQEMENNRHCNDKQRIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          L+SEG+ERLKRLDEMLDMQGH
Sbjct: 61 LISEGLERLKRLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670 vs. TrEMBL
Match: M5XJM7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024578mg PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-23
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          M  + DL++F+LRARVLKLYRQ LR  R++PVD R ELR  +R+E+E NR CNDRQ+IRF
Sbjct: 1  MALALDLQDFLLRARVLKLYRQALRITRRSPVDARGELRSTIRQELENNRHCNDRQRIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
           LSEG+ERLKRLDEMLDMQGH
Sbjct: 61 FLSEGLERLKRLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670 vs. TrEMBL
Match: W9RMC8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014312 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          M  S DL++FILRARVLKLYRQ LRT R+APV  R ELR  +R+EME NR CND+QKIRF
Sbjct: 1  MALSFDLQDFILRARVLKLYRQALRTTRRAPVHARAELRQTIRQEMENNRNCNDKQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
           +SEG+ERLK L EMLDMQGH
Sbjct: 61 FISEGLERLKDLGEMLDMQGH 81

[Close]

BLAST of CSPI03G43670 vs. TrEMBL
Match: A0A151RQG9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_033710 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.6e-23
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 1


Query: 6  DLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEG 65
          DL++F+LRARVL+LYRQ LR A +AP   RDELR  +REEME NR CND+Q+IR+L+SEG
Sbjct: 2  DLQDFLLRARVLRLYRQALRVAGRAPSSARDELRQTIREEMENNRNCNDKQRIRYLISEG 61

Query: 66 IERLKRLDEMLDMQGH 82
          +ERLKRLDEMLDMQGH
Sbjct: 62 LERLKRLDEMLDMQGH 77

[Close]

BLAST of CSPI03G43670 vs. TAIR10
Match: AT1G76065.1 (AT1G76065.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-24
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 1


Query: 6  DLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEG 65
          DL+ FILRARVLKLYRQ L+ A +APV  R EL+  +R+EMEKNR CND+QKIR+L+SEG
Sbjct: 5  DLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYLISEG 64

Query: 66 IERLKRLDEMLDMQGH 82
          +ER+K LDEMLDMQGH
Sbjct: 65 LERIKGLDEMLDMQGH 80

[Close]

BLAST of CSPI03G43670 vs. NCBI nr
Match: gi|449437174|ref|XP_004136367.1| (PREDICTED: LYR motif-containing protein 2 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLKRLDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670 vs. NCBI nr
Match: gi|659132917|ref|XP_008466455.1| (PREDICTED: uncharacterized protein LOC103503854 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-35
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670 vs. NCBI nr
Match: gi|700204931|gb|KGN60064.1| (hypothetical protein Csa_3G874410 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-26
Identity = 68/81 (83.95%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQ             DELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQ-------------DELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLKRLDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 68

[Close]

BLAST of CSPI03G43670 vs. NCBI nr
Match: gi|645228886|ref|XP_008221204.1| (PREDICTED: uncharacterized protein LOC103321195 [Prunus mume])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          M  + DL++F+LRARVLKLYRQ LR  R+APVD R ELR  +R+E+E NR CNDRQ+IRF
Sbjct: 1  MALALDLQDFLLRARVLKLYRQALRITRRAPVDARGELRSTIRQELENNRHCNDRQRIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
           LSEG+ERLKRLDEMLDMQGH
Sbjct: 61 FLSEGLERLKRLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670 vs. NCBI nr
Match: gi|224129442|ref|XP_002320587.1| (hypothetical protein POPTR_0014s17970g [Populus trichocarpa])

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-23
Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MV S  L++FILRARVLKLYRQ LRT R+AP D R +L+  +R+EME NR CND+Q+IRF
Sbjct: 1  MVLSFGLQDFILRARVLKLYRQALRTTRRAPGDARADLKQTIRQEMENNRHCNDKQRIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          L+SEG+ERLKRLDEMLDMQGH
Sbjct: 61 LISEGLERLKRLDEMLDMQGH 81

The following BLAST results are available for this feature:

BLAST of CSPI03G43670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G43670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGK2_CUCSA	2.9e-26	83.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G874410 PE=3 SV=1	[more]
A9P9V6_POPTR	1.0e-23	71.60	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17970g PE=2 SV=1	[more]
M5XJM7_PRUPE	1.7e-23	70.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024578mg PE=3 SV=1	[more]
W9RMC8_9ROSA	3.9e-23	71.60	Uncharacterized protein OS=Morus notabilis GN=L484_014312 PE=3 SV=1	[more]
A0A151RQG9_CAJCA	8.6e-23	72.37	Uncharacterized protein OS=Cajanus cajan GN=KK1_033710 PE=3 SV=1	[more]

BLAST of CSPI03G43670 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76065.1	1.1e-24	71.05	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of CSPI03G43670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437174\|ref\|XP_004136367.1\|	2.0e-36	100.00	PREDICTED: LYR motif-containing protein 2 [Cucumis sativus]	[more]
gi\|659132917\|ref\|XP_008466455.1\|	2.8e-35	97.53	PREDICTED: uncharacterized protein LOC103503854 [Cucumis melo]	[more]
gi\|700204931\|gb\|KGN60064.1\|	4.1e-26	83.95	hypothetical protein Csa_3G874410 [Cucumis sativus]	[more]
gi\|645228886\|ref\|XP_008221204.1\|	1.1e-23	71.60	PREDICTED: uncharacterized protein LOC103321195 [Prunus mume]	[more]
gi\|224129442\|ref\|XP_002320587.1\|	1.5e-23	71.60	hypothetical protein POPTR_0014s17970g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR
IPR026868	Lyrm2
IPR008011	Complex1_LYR
IPR026868	Lyrm2
IPR008011	Complex1_LYR
IPR026868	Lyrm2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G43670.3	CSPI03G43670.3	mRNA
CSPI03G43670.2	CSPI03G43670.2	mRNA
CSPI03G43670.1	CSPI03G43670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..70 score: 3.8
IPR026868	LYR motif-containing protein 2	PANTHER	PTHR13675	FAMILY NOT NAMED	coord: 1..81 score: 5.5
None	No IPR available	PANTHER	PTHR13675:SF0	LYR MOTIF-CONTAINING PROTEIN 2	coord: 1..81 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G43670	Cla007422	Watermelon (97103) v1	cpiwmB249
CSPI03G43670	Csa3G874410	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G43670	MELO3C003728	Melon (DHL92) v3.5.1	cpimeB215
CSPI03G43670	ClCG05G015420	Watermelon (Charleston Gray)	cpiwcgB244
CSPI03G43670	Lsi04G017780	Bottle gourd (USVL1VR-Ls)	cpilsiB190
CSPI03G43670	MELO3C003728.2	Melon (DHL92) v3.6.1	cpimedB209
CSPI03G43670	CsaV3_3G046120	Cucumber (Chinese Long) v3	cpicucB145
CSPI03G43670	Cla97C05G096470	Watermelon (97103) v2	cpiwmbB227
CSPI03G43670	Cucsa.343250	Cucumber (Gy14) v1	cgycpiB504
CSPI03G43670	CmaCh09G000860	Cucurbita maxima (Rimu)	cmacpiB017
CSPI03G43670	CmaCh01G019910	Cucurbita maxima (Rimu)	cmacpiB447
CSPI03G43670	CmoCh09G000840	Cucurbita moschata (Rifu)	cmocpiB008
CSPI03G43670	Cp4.1LG06g00370	Cucurbita pepo (Zucchini)	cpecpiB781
CSPI03G43670	CsGy3G041190	Cucumber (Gy14) v2	cgybcpiB111
CSPI03G43670	Carg17217	Silver-seed gourd	carcpiB0984

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G43670	Cucurbita pepo (Zucchini)	cpecpiB558
CSPI03G43670	Silver-seed gourd	carcpiB0116
CSPI03G43670	Cucurbita moschata (Rifu)	cmocpiB435