MU45005 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU45005
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	LYR family of Fe/S cluster biogenesis protein
Location	chr4 : 3629819 .. 3630725 (+)
Sequence length	582

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACTCAATATCAAAATCGGTCTTCCGTCGTTGAATCCTCAAAGAAATCGGAACCGAACGACAGAAATGATTATACCTCCGATTGAATCAAGCAGGGAATTCGCTTCACTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTCATCATTAAGGAAAGAGAAATCGCGATGGTCTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCACCTGTTGATGGTCGAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGAGATTGAAGCAATTAGATGAGATGTTGGATATGCAAGGCCATTAACTAGAGATCTTTCTTTTCTTTCTTTTTTTTTATTAATTTTGATTATTGGGAGTTAAGTTTTTCTCCAATCATTTTGGAGTGTCTCATAGAAAGGAATGTTGTTTTAGGGGAAGGATATGAGTTTGGTTAAGGGCTTATCTTCAAGTTATTGTAATCAAATTGTGATTA

Library


Library category	ESTs
melon 46d library	2
melon AI library	1
melon CI library	1

Homology

[Close]

BLAST of MU45005 vs. Swiss-Prot
Match: LYRM2_PONAB (LYR motif-containing protein 2 OS=Pongo abelii GN=LYRM2 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.6e-06
Identity = 26/71 (36.62%), Postives = 44/71 (61.97%), Query Frame = 1


Query: 187 LREFILRARVLKLYRQGLRTARKAPVDG-RDELRHMMREEMEKNRKCNDRQKIRFLLSEG 246
           L++F+ R +VL LYR+ L+T R+ P D  R  L+   REE ++N+   +   IR ++++G
Sbjct: 13  LKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFKRNKSATEEDTIRMMITQG 72

Query: 247 IERLKQLDEML 306
             +LK+L++ L
Sbjct: 73  NMQLKELEKTL 83

Query: 307  366
           
Sbjct: 133  83

Query: 367  397
           
Sbjct: 193  83

[Close]

BLAST of MU45005 vs. TrEMBL
Match: A0A0A0LGK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G874410 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 67/81 (82.72%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 228
           MVFSHDLREFILRARVLKLYRQ             DELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1   MVFSHDLREFILRARVLKLYRQ-------------DELRHMMREEMEKNRKCNDRQKIRF 60

Query: 229 LLSEGIERLKQLDEMLDMQGH 288
           LLSEGIERLK+LDEMLDMQGH
Sbjct: 61  LLSEGIERLKRLDEMLDMQGH 68

Query: 289  348
           
Sbjct: 121  68

Query: 349  408
           
Sbjct: 181  68

Query: 409  412
           
Sbjct: 241  68

[Close]

BLAST of MU45005 vs. TrEMBL
Match: W9RMC8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014312 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-24
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 228
           M  S DL++FILRARVLKLYRQ LRT R+APV  R ELR  +R+EME NR CND+QKIRF
Sbjct: 1   MALSFDLQDFILRARVLKLYRQALRTTRRAPVHARAELRQTIRQEMENNRNCNDKQKIRF 60

Query: 229 LLSEGIERLKQLDEMLDMQGH 288
            +SEG+ERLK L EMLDMQGH
Sbjct: 61  FISEGLERLKDLGEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  412
           
Sbjct: 241  81

[Close]

BLAST of MU45005 vs. TrEMBL
Match: A9P9V6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17970g PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.9e-24
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 228
           MV S  L++FILRARVLKLYRQ LRT R+AP D R +L+  +R+EME NR CND+Q+IRF
Sbjct: 1   MVLSFGLQDFILRARVLKLYRQALRTTRRAPGDARADLKQTIRQEMENNRHCNDKQRIRF 60

Query: 229 LLSEGIERLKQLDEMLDMQGH 288
           L+SEG+ERLK+LDEMLDMQGH
Sbjct: 61  LISEGLERLKRLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  412
           
Sbjct: 241  81

[Close]

BLAST of MU45005 vs. TrEMBL
Match: M5XJM7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024578mg PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.9e-24
Identity = 56/81 (69.14%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 228
           M  + DL++F+LRARVLKLYRQ LR  R++PVD R ELR  +R+E+E NR CNDRQ+IRF
Sbjct: 1   MALALDLQDFLLRARVLKLYRQALRITRRSPVDARGELRSTIRQELENNRHCNDRQRIRF 60

Query: 229 LLSEGIERLKQLDEMLDMQGH 288
            LSEG+ERLK+LDEMLDMQGH
Sbjct: 61  FLSEGLERLKRLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  412
           
Sbjct: 241  81

[Close]

BLAST of MU45005 vs. TrEMBL
Match: M0SXN4_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-23
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 228
           MV   DL+ FI+RARVLKLYRQ LRTAR+AP   RDELR  MR+E+EKNR C+D+QKIRF
Sbjct: 1   MVRYLDLQGFIVRARVLKLYRQALRTARRAPTHARDELRQTMRQEIEKNRYCDDKQKIRF 60

Query: 229 LLSEGIERLKQLDEMLDMQGH 288
           L+SEG++RLK LDEMLDM GH
Sbjct: 61  LISEGLQRLKGLDEMLDMTGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  412
           
Sbjct: 241  81

[Close]

BLAST of MU45005 vs. TAIR10
Match: AT1G76065.1 (AT1G76065.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-25
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 1


Query: 184 DLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEG 243
           DL+ FILRARVLKLYRQ L+ A +APV  R EL+  +R+EMEKNR CND+QKIR+L+SEG
Sbjct: 5   DLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYLISEG 64

Query: 244 IERLKQLDEMLDMQGH 303
           +ER+K LDEMLDMQGH
Sbjct: 65  LERIKGLDEMLDMQGH 80

Query: 304  363
           
Sbjct: 125  80

Query: 364  412
           
Sbjct: 185  80

[Close]

BLAST of MU45005 vs. NCBI nr
Match: gi|449437174|ref|XP_004136367.1| (PREDICTED: LYR motif-containing protein 2 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 3.0e-35
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 228
           MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1   MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 229 LLSEGIERLKQLDEMLDMQGH 288
           LLSEGIERLK+LDEMLDMQGH
Sbjct: 61  LLSEGIERLKRLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  412
           
Sbjct: 241  81

[Close]

BLAST of MU45005 vs. NCBI nr
Match: gi|659132917|ref|XP_008466455.1| (PREDICTED: uncharacterized protein LOC103503854 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 5.2e-35
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 228
           MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1   MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 229 LLSEGIERLKQLDEMLDMQGH 288
           LLSEGIERLKQLDEMLDMQGH
Sbjct: 61  LLSEGIERLKQLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  412
           
Sbjct: 241  81

[Close]

BLAST of MU45005 vs. NCBI nr
Match: gi|700204931|gb|KGN60064.1| (hypothetical protein Csa_3G874410 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 6.3e-25
Identity = 67/81 (82.72%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 228
           MVFSHDLREFILRARVLKLYRQ             DELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1   MVFSHDLREFILRARVLKLYRQ-------------DELRHMMREEMEKNRKCNDRQKIRF 60

Query: 229 LLSEGIERLKQLDEMLDMQGH 288
           LLSEGIERLK+LDEMLDMQGH
Sbjct: 61  LLSEGIERLKRLDEMLDMQGH 68

Query: 289  348
           
Sbjct: 121  68

Query: 349  408
           
Sbjct: 181  68

Query: 409  412
           
Sbjct: 241  68

[Close]

BLAST of MU45005 vs. NCBI nr
Match: gi|645228886|ref|XP_008221204.1| (PREDICTED: uncharacterized protein LOC103321195 [Prunus mume])

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-22
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 228
           M  + DL++F+LRARVLKLYRQ LR  R+APVD R ELR  +R+E+E NR CNDRQ+IRF
Sbjct: 1   MALALDLQDFLLRARVLKLYRQALRITRRAPVDARGELRSTIRQELENNRHCNDRQRIRF 60

Query: 229 LLSEGIERLKQLDEMLDMQGH 288
            LSEG+ERLK+LDEMLDMQGH
Sbjct: 61  FLSEGLERLKRLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  412
           
Sbjct: 241  81

[Close]

BLAST of MU45005 vs. NCBI nr
Match: gi|703112453|ref|XP_010100121.1| (hypothetical protein L484_014312 [Morus notabilis])

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-22
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 228
           M  S DL++FILRARVLKLYRQ LRT R+APV  R ELR  +R+EME NR CND+QKIRF
Sbjct: 1   MALSFDLQDFILRARVLKLYRQALRTTRRAPVHARAELRQTIRQEMENNRNCNDKQKIRF 60

Query: 229 LLSEGIERLKQLDEMLDMQGH 288
            +SEG+ERLK L EMLDMQGH
Sbjct: 61  FISEGLERLKDLGEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  412
           
Sbjct: 241  81

The following BLAST results are available for this feature:

BLAST of MU45005 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LYRM2_PONAB	8.6e-06	36.62	LYR motif-containing protein 2 OS=Pongo abelii GN=LYRM2 PE=3 SV=1	[more]

BLAST of MU45005 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGK2_CUCSA	1.0e-26	82.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G874410 PE=3 SV=1	[more]
W9RMC8_9ROSA	2.2e-24	71.60	Uncharacterized protein OS=Morus notabilis GN=L484_014312 PE=3 SV=1	[more]
A9P9V6_POPTR	2.9e-24	70.37	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17970g PE=2 SV=1	[more]
M5XJM7_PRUPE	4.9e-24	69.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024578mg PE=3 SV=1	[more]
M0SXN4_MUSAM	1.8e-23	71.60	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]

BLAST of MU45005 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76065.1	1.0e-25	71.05	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of MU45005 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437174\|ref\|XP_004136367.1\|	3.0e-35	98.77	PREDICTED: LYR motif-containing protein 2 [Cucumis sativus]	[more]
gi\|659132917\|ref\|XP_008466455.1\|	5.2e-35	98.77	PREDICTED: uncharacterized protein LOC103503854 [Cucumis melo]	[more]
gi\|700204931\|gb\|KGN60064.1\|	6.3e-25	82.72	hypothetical protein Csa_3G874410 [Cucumis sativus]	[more]
gi\|645228886\|ref\|XP_008221204.1\|	1.7e-22	70.37	PREDICTED: uncharacterized protein LOC103321195 [Prunus mume]	[more]
gi\|703112453\|ref\|XP_010100121.1\|	1.7e-22	71.60	hypothetical protein L484_014312 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR
IPR026868	Lyrm2

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C003728	MELO3C003728	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
46D07E12	46D07E12	EST
46D20D10	46D20D10	EST
AI09A01	AI09A01	EST
CI08A10	CI08A10	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..71 score: 1.6
IPR026868	LYR motif-containing protein 2	PANTHER	PTHR13675	FAMILY NOT NAMED	coord: 1..81 score: 1.4
None	No IPR available	PANTHER	PTHR13675:SF0	LYR MOTIF-CONTAINING PROTEIN 2	coord: 1..81 score: 1.4