MU53240 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU53240
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	LYR family of Fe/S cluster biogenesis protein
Location	chr4 : 3629819 .. 3630817 (+)
Sequence length	759

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACTCAATATCAAAATCGGTCTTCCGTCGTTGAATCCTCAAAGAAATCGGAACCGAACGACAGAAATGATTATACCTCCGATTGAATCAAGCAGGGAATTCGCTTCACTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTGATCATTAAGGAAAGAGAAATCGCGATGGTCTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCACCTGTTGATGGTCGAGGTAAAGCTTTGTTTAATGGGATTTTATGATGACTTTGTGTTGTGGTTGTGGAAATTTCATGAATTGGATTTGATGATACTGGAACAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGAGATTGAAGCAATTAGATGAGATGTTGGATATGCAAGGCCATTAACTAGAGATCTTTCTTTTCTTTCTTTTTTTATTAATTTTGATTATTGGGAGTTAAGTTTTTCTCCAATCATTTTGGAGTGTCTCATAGAAAGGAATGTTGTTTTAGGGGAAGGATATGAGTTTGGTTAAGGGCTTATCTTCAAGTTATTGTAATCAAATTGTGATTAAGGTACAAAGGAGTTATTAATTCCATTTCCCACATTATTTGTATCAGTTTGATTTTTATGTTAGGTTTTGAAATAAGAAACTGAAATCATCT

Library


Library category	ESTs
melon CI library	2

Homology

[Close]

BLAST of MU53240 vs. TrEMBL
Match: M5XJM7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024578mg PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-20
Identity = 57/110 (51.82%), Postives = 69/110 (62.73%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRGKALFNGIXXXXXXXXXEIS*IGFD 228
           M  + DL++F+LRARVLKLYRQ LR  R++PVD RG                        
Sbjct: 1   MALALDLQDFLLRARVLKLYRQALRITRRSPVDARG------------------------ 60

Query: 229 DTGTDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 288
                ELR  +R+E+E NR CNDRQ+IRF LSEG+ERLK+LDEMLDMQGH
Sbjct: 61  -----ELRSTIRQELENNRHCNDRQRIRFFLSEGLERLKRLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  468
           
Sbjct: 241  81

Query: 469  499
           
Sbjct: 301  81

[Close]

BLAST of MU53240 vs. TrEMBL
Match: W9RMC8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014312 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.3e-20
Identity = 58/110 (52.73%), Postives = 66/110 (60.00%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRGKALFNGIXXXXXXXXXEIS*IGFD 228
           M  S DL++FILRARVLKLYRQ LRT R+APV  R                         
Sbjct: 1   MALSFDLQDFILRARVLKLYRQALRTTRRAPVHARA------------------------ 60

Query: 229 DTGTDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 288
                ELR  +R+EME NR CND+QKIRF +SEG+ERLK L EMLDMQGH
Sbjct: 61  -----ELRQTIRQEMENNRNCNDKQKIRFFISEGLERLKDLGEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  468
           
Sbjct: 241  81

Query: 469  499
           
Sbjct: 301  81

[Close]

BLAST of MU53240 vs. TrEMBL
Match: A9P9V6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17970g PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.5e-20
Identity = 57/110 (51.82%), Postives = 69/110 (62.73%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRGKALFNGIXXXXXXXXXEIS*IGFD 228
           MV S  L++FILRARVLKLYRQ LRT R+AP D R                         
Sbjct: 1   MVLSFGLQDFILRARVLKLYRQALRTTRRAPGDARA------------------------ 60

Query: 229 DTGTDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 288
                +L+  +R+EME NR CND+Q+IRFL+SEG+ERLK+LDEMLDMQGH
Sbjct: 61  -----DLKQTIRQEMENNRHCNDKQRIRFLISEGLERLKRLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  468
           
Sbjct: 241  81

Query: 469  499
           
Sbjct: 301  81

[Close]

BLAST of MU53240 vs. TrEMBL
Match: A0A103XDE9_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_025992 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-19
Identity = 58/110 (52.73%), Postives = 68/110 (61.82%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRGKALFNGIXXXXXXXXXEIS*IGFD 228
           MV S DL+ FILRARVLKLYRQ LR A++APV  RG                        
Sbjct: 1   MVVSFDLQTFILRARVLKLYRQALRIAKRAPVPSRG------------------------ 60

Query: 229 DTGTDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 288
                EL   +R+EME NR CND+Q+IR+L+SEG+ERLK LDEMLDMQGH
Sbjct: 61  -----ELMQTIRQEMENNRACNDKQRIRYLISEGMERLKGLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  468
           
Sbjct: 241  81

Query: 469  499
           
Sbjct: 301  81

[Close]

BLAST of MU53240 vs. TrEMBL
Match: R0ICR5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10021228mg PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.0e-19
Identity = 56/105 (53.33%), Postives = 67/105 (63.81%), Query Frame = 1


Query: 184 DLREFILRARVLKLYRQGLRTARKAPVDGRGKALFNGIXXXXXXXXXEIS*IGFDDTGTD 243
           DL+ FILRARVLKLYRQ L+ A++APV  RG                             
Sbjct: 6   DLQSFILRARVLKLYRQALKIAQRAPVHVRG----------------------------- 65

Query: 244 ELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 303
           EL+  +REEMEKNR CND+QKIR+L+SEG+ER+K LDEMLDMQGH
Sbjct: 66  ELKQTVREEMEKNRDCNDKQKIRYLISEGLERVKGLDEMLDMQGH 81

Query: 304  363
           
Sbjct: 126  81

Query: 364  423
           
Sbjct: 186  81

Query: 424  483
           
Sbjct: 246  81

Query: 484  499
           
Sbjct: 306  81

[Close]

BLAST of MU53240 vs. TAIR10
Match: AT1G76065.1 (AT1G76065.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 101.3 bits (251), Expect = 9.0e-22
Identity = 55/105 (52.38%), Postives = 64/105 (60.95%), Query Frame = 1


Query: 184 DLREFILRARVLKLYRQGLRTARKAPVDGRGKALFNGIXXXXXXXXXEIS*IGFDDTGTD 243
           DL+ FILRARVLKLYRQ L+ A +APV  RG                             
Sbjct: 5   DLQSFILRARVLKLYRQALKIAHRAPVHVRG----------------------------- 64

Query: 244 ELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 303
           EL+  +R+EMEKNR CND+QKIR+L+SEG+ER+K LDEMLDMQGH
Sbjct: 65  ELKQTVRQEMEKNRDCNDKQKIRYLISEGLERIKGLDEMLDMQGH 80

Query: 304  363
           
Sbjct: 125  80

Query: 364  423
           
Sbjct: 185  80

Query: 424  483
           
Sbjct: 245  80

Query: 484  499
           
Sbjct: 305  80

[Close]

BLAST of MU53240 vs. NCBI nr
Match: gi|449437174|ref|XP_004136367.1| (PREDICTED: LYR motif-containing protein 2 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 5.9e-31
Identity = 80/110 (72.73%), Postives = 81/110 (73.64%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRGKALFNGIXXXXXXXXXEIS*IGFD 228
           MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGR                         
Sbjct: 1   MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGR------------------------- 60

Query: 229 DTGTDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 288
               DELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLK+LDEMLDMQGH
Sbjct: 61  ----DELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKRLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  468
           
Sbjct: 241  81

Query: 469  499
           
Sbjct: 301  81

[Close]

BLAST of MU53240 vs. NCBI nr
Match: gi|659132917|ref|XP_008466455.1| (PREDICTED: uncharacterized protein LOC103503854 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 1.0e-30
Identity = 80/110 (72.73%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRGKALFNGIXXXXXXXXXEIS*IGFD 228
           MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGR                         
Sbjct: 1   MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGR------------------------- 60

Query: 229 DTGTDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 288
               DELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH
Sbjct: 61  ----DELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  468
           
Sbjct: 241  81

Query: 469  499
           
Sbjct: 301  81

[Close]

BLAST of MU53240 vs. NCBI nr
Match: gi|645228886|ref|XP_008221204.1| (PREDICTED: uncharacterized protein LOC103321195 [Prunus mume])

HSP 1 Score: 104.0 bits (258), Expect = 4.0e-19
Identity = 58/110 (52.73%), Postives = 69/110 (62.73%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRGKALFNGIXXXXXXXXXEIS*IGFD 228
           M  + DL++F+LRARVLKLYRQ LR  R+APVD RG                        
Sbjct: 1   MALALDLQDFLLRARVLKLYRQALRITRRAPVDARG------------------------ 60

Query: 229 DTGTDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 288
                ELR  +R+E+E NR CNDRQ+IRF LSEG+ERLK+LDEMLDMQGH
Sbjct: 61  -----ELRSTIRQELENNRHCNDRQRIRFFLSEGLERLKRLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  468
           
Sbjct: 241  81

Query: 469  499
           
Sbjct: 301  81

[Close]

BLAST of MU53240 vs. NCBI nr
Match: gi|596245317|ref|XP_007224542.1| (hypothetical protein PRUPE_ppa024578mg [Prunus persica])

HSP 1 Score: 102.8 bits (255), Expect = 8.8e-19
Identity = 57/110 (51.82%), Postives = 69/110 (62.73%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRGKALFNGIXXXXXXXXXEIS*IGFD 228
           M  + DL++F+LRARVLKLYRQ LR  R++PVD RG                        
Sbjct: 1   MALALDLQDFLLRARVLKLYRQALRITRRSPVDARG------------------------ 60

Query: 229 DTGTDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 288
                ELR  +R+E+E NR CNDRQ+IRF LSEG+ERLK+LDEMLDMQGH
Sbjct: 61  -----ELRSTIRQELENNRHCNDRQRIRFFLSEGLERLKRLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  468
           
Sbjct: 241  81

Query: 469  499
           
Sbjct: 301  81

[Close]

BLAST of MU53240 vs. NCBI nr
Match: gi|470110104|ref|XP_004291327.1| (PREDICTED: uncharacterized protein LOC101297027 [Fragaria vesca subsp. vesca])

HSP 1 Score: 102.8 bits (255), Expect = 8.8e-19
Identity = 58/110 (52.73%), Postives = 69/110 (62.73%), Query Frame = 1


Query: 169 MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRGKALFNGIXXXXXXXXXEIS*IGFD 228
           M  + DL++F++RARVLKLYRQ LR  R+APVD RG                        
Sbjct: 1   MALAFDLQDFLIRARVLKLYRQALRVTRRAPVDARG------------------------ 60

Query: 229 DTGTDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH 288
                ELR  +R+EME +R CNDRQKIR+LLSEG ERLK+LDEMLDMQGH
Sbjct: 61  -----ELRTTIRQEMENSRDCNDRQKIRYLLSEGQERLKRLDEMLDMQGH 81

Query: 289  348
           
Sbjct: 121  81

Query: 349  408
           
Sbjct: 181  81

Query: 409  468
           
Sbjct: 241  81

Query: 469  499
           
Sbjct: 301  81

The following BLAST results are available for this feature:

BLAST of MU53240 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XJM7_PRUPE	4.3e-20	51.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024578mg PE=3 SV=1	[more]
W9RMC8_9ROSA	7.3e-20	52.73	Uncharacterized protein OS=Morus notabilis GN=L484_014312 PE=3 SV=1	[more]
A9P9V6_POPTR	9.5e-20	51.82	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17970g PE=2 SV=1	[more]
A0A103XDE9_CYNCS	2.1e-19	52.73	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_025992 PE=3 ...	[more]
R0ICR5_9BRAS	8.0e-19	53.33	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10021228mg PE=3 SV=1	[more]

BLAST of MU53240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76065.1	9.0e-22	52.38	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of MU53240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437174\|ref\|XP_004136367.1\|	5.9e-31	72.73	PREDICTED: LYR motif-containing protein 2 [Cucumis sativus]	[more]
gi\|659132917\|ref\|XP_008466455.1\|	1.0e-30	72.73	PREDICTED: uncharacterized protein LOC103503854 [Cucumis melo]	[more]
gi\|645228886\|ref\|XP_008221204.1\|	4.0e-19	52.73	PREDICTED: uncharacterized protein LOC103321195 [Prunus mume]	[more]
gi\|596245317\|ref\|XP_007224542.1\|	8.8e-19	51.82	hypothetical protein PRUPE_ppa024578mg [Prunus persica]	[more]
gi\|470110104\|ref\|XP_004291327.1\|	8.8e-19	52.73	PREDICTED: uncharacterized protein LOC101297027 [Fragaria vesca subsp. vesca]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C003728	MELO3C003728	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
CI09D04	CI09D04	EST
CI37A06	CI37A06	EST