MELO3C002108.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C002108.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr12 : 26252180 .. 26252589 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACTCGATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCAAGAAAAAAGAAAGAAAGGGAGATTGTAAAAATGGCAAGAATAATGAGAGAAATTAGCGGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTCTTTTTACACTCTGCATAATTTCCACTGTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTGGACGTTGAGCTTTACGGCGGCGGTTGCGCTGCCGGGTGCGGCGCTGGATGTGGTGCTTGAAAAATAGAGAACCCCCTTCTGCTTCTTCTTCTTCTTTTTCATCTATAGGAAACAAATTATGTTTTGGATTTTTAAAGCCATGAGAGAATTAAACAGAGAGAGCTTGTTTT

mRNA sequence

GAACTCGATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCAAGAAAAAAGAAAGAAAGGGAGATTGTAAAAATGGCAAGAATAATGAGAGAAATTAGCGGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTCTTTTTACACTCTGCATAATTTCCACTGTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTGGACGTTGAGCTTTACGGCGGCGGTTGCGCTGCCGGGTGCGGCGCTGGATGTGGTGCTTGAAAAATAGAGAACCCCCTTCTGCTTCTTCTTCTTCTTTTTCATCTATAGGAAACAAATTATGTTTTGGATTTTTAAAGCCATGAGAGAATTAAACAGAGAGAGCTTGTTTT

Coding sequence (CDS)

ATGGCAAGAATAATGAGAGAAATTAGCGGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTCTTTTTACACTCTGCATAATTTCCACTGTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTGGACGTTGAGCTTTACGGCGGCGGTTGCGCTGCCGGGTGCGGCGCTGGATGTGGTGCTTGA

Protein sequence

MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA
Homology
[Close]
BLAST of MELO3C002108.2 vs. NCBI nr
Match: KGN64148.1 (hypothetical protein Csa_1G042580 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.0e-28
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 60
          MAR+MREIS QNGSFGLAGGETYWLFWVALFTLCIIST+IFSCSDGMSKDRNSTVDVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCA 66
          GGGCA
Sbjct: 61 GGGCA 65

[Close]
BLAST of MELO3C002108.2 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALF-TLCIISTVIFSCSDGMSKDRNSTVDVEL 60
          M R+ RE +G +G  G +   T+ +F++ L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCA 66
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]
BLAST of MELO3C002108.2 vs. NCBI nr
Match: POO01897.1 (hypothetical protein TorRG33x02_021890 [Trema orientalis])

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALF-TLCIISTVIFSCSDGMSKDRNSTVDVEL 60
          M R+ RE +G +G  G +   T+ +F + L  TLCI+STVIFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCA 66
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]
BLAST of MELO3C002108.2 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 72.4 bits (176), Expect = 7.3e-10
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 0 

Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 60
          M R+ R+++  +GS    G   + + W+AL  +CIIS +IFSC+DG+SK++ ST D ELY
Sbjct: 1  MVRLWRDLASVHGS----GSAGFVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 61 GGGCA 66
          GGGCA
Sbjct: 61 GGGCA 61

[Close]
BLAST of MELO3C002108.2 vs. NCBI nr
Match: PNT09599.1 (hypothetical protein POPTR_012G054000v3 [Populus trichocarpa])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 60
          M R ++E+    GS G   G    L W  L TLC++S ++FSC++G+SKD+ S  D  LY
Sbjct: 1  MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 61 GGGCA 66
          GGGCA
Sbjct: 61 GGGCA 65

[Close]
BLAST of MELO3C002108.2 vs. TrEMBL
Match: tr|A0A0A0LQU7|A0A0A0LQU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 60
          MAR+MREIS QNGSFGLAGGETYWLFWVALFTLCIIST+IFSCSDGMSKDRNSTVDVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCA 66
          GGGCA
Sbjct: 61 GGGCA 65

[Close]
BLAST of MELO3C002108.2 vs. TrEMBL
Match: tr|A0A2P5AQX4|A0A2P5AQX4_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.7e-11
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALF-TLCIISTVIFSCSDGMSKDRNSTVDVEL 60
          M R+ RE +G +G  G +   T+ +F++ L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCA 66
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]
BLAST of MELO3C002108.2 vs. TrEMBL
Match: tr|A0A2P5FVW4|A0A2P5FVW4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021890 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALF-TLCIISTVIFSCSDGMSKDRNSTVDVEL 60
          M R+ RE +G +G  G +   T+ +F + L  TLCI+STVIFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCA 66
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]
BLAST of MELO3C002108.2 vs. TrEMBL
Match: tr|B9I2J4|B9I2J4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G054000v3 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.9e-09
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 60
          M R ++E+    GS G   G    L W  L TLC++S ++FSC++G+SKD+ S  D  LY
Sbjct: 1  MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 61 GGGCA 66
          GGGCA
Sbjct: 61 GGGCA 65

[Close]
BLAST of MELO3C002108.2 vs. TrEMBL
Match: tr|M5WF59|M5WF59_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G224700 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-08
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 1  MARIMREISGQNGSFGLAGGETYWL-FWVALFTLCIISTVIFSCSDGM-SKDRNSTVDVE 60
          M R+ REI   +G    A     WL FW AL +LC++S ++FSC+DG+ SK++N+  D +
Sbjct: 1  MVRVWREIGSVDGGVATAN----WLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTK 60

Query: 61 LYGGGCA 66
          LYGGGCA
Sbjct: 61 LYGGGCA 63

The following BLAST results are available for this feature:
BLAST of MELO3C002108.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64148.12.0e-2895.38hypothetical protein Csa_1G042580 [Cucumis sativus][more]
PON38946.11.5e-1051.52hypothetical protein PanWU01x14_308610 [Parasponia andersonii][more]
POO01897.12.5e-1053.03hypothetical protein TorRG33x02_021890 [Trema orientalis][more]
XP_015882794.17.3e-1049.23uncharacterized protein LOC107418606 [Ziziphus jujuba][more]
PNT09599.11.0e-0846.15hypothetical protein POPTR_012G054000v3 [Populus trichocarpa][more]
BLAST of MELO3C002108.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C002108.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C002108.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQU7|A0A0A0LQU7_CUCSA1.3e-2895.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1[more]
tr|A0A2P5AQX4|A0A2P5AQX4_PARAD9.7e-1151.52Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE... [more]
tr|A0A2P5FVW4|A0A2P5FVW4_9ROSA1.6e-1053.03Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021890 PE=4 S... [more]
tr|B9I2J4|B9I2J4_POPTR6.9e-0946.15Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G054000v3 PE=... [more]
tr|M5WF59|M5WF59_PRUPE2.6e-0847.76Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G224700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002108.2.1MELO3C002108.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199FAMILY NOT NAMEDcoord: 1..74

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C002108.2Csa1G042580Cucumber (Chinese Long) v2cumedB022
MELO3C002108.2CSPI01G06980Wild cucumber (PI 183967)cpimedB023
MELO3C002108.2CmaCh13G010090Cucurbita maxima (Rimu)cmamedB214
MELO3C002108.2CmoCh13G010470Cucurbita moschata (Rifu)cmomedB202
MELO3C002108.2Lsi02G002100Bottle gourd (USVL1VR-Ls)lsimedB189
MELO3C002108.2Cp4.1LG09g11320Cucurbita pepo (Zucchini)cpemedB031
MELO3C002108.2Cp4.1LG20g01230Cucurbita pepo (Zucchini)cpemedB560
MELO3C002108.2CsGy1G006810Cucumber (Gy14) v2cgybmedB020
MELO3C002108.2Cla018478Watermelon (97103) v1medwmB170
MELO3C002108.2ClCG04G010920Watermelon (Charleston Gray)medwcgB146
MELO3C002108.2Bhi08G001050Wax gourdmedwgoB175
MELO3C002108.2CsaV3_1G006920Cucumber (Chinese Long) v3cucmedB022
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C002108.2Cucumber (Gy14) v2cgybmedB025
MELO3C002108.2Cucumber (Gy14) v1cgymedB157
MELO3C002108.2Cucumber (Gy14) v1cgymedB182
MELO3C002108.2Cucurbita maxima (Rimu)cmamedB056
MELO3C002108.2Cucurbita maxima (Rimu)cmamedB098
MELO3C002108.2Cucurbita maxima (Rimu)cmamedB424
MELO3C002108.2Cucurbita moschata (Rifu)cmomedB048
MELO3C002108.2Cucurbita moschata (Rifu)cmomedB090
MELO3C002108.2Cucurbita moschata (Rifu)cmomedB408
MELO3C002108.2Cucurbita pepo (Zucchini)cpemedB380
MELO3C002108.2Cucurbita pepo (Zucchini)cpemedB711
MELO3C002108.2Wild cucumber (PI 183967)cpimedB029
MELO3C002108.2Cucumber (Chinese Long) v2cumedB028
MELO3C002108.2Melon (DHL92) v3.6.1medmedB064
MELO3C002108.2Bottle gourd (USVL1VR-Ls)lsimedB413
MELO3C002108.2Watermelon (Charleston Gray)medwcgB150
MELO3C002108.2Watermelon (97103) v1medwmB177
MELO3C002108.2Silver-seed gourdcarmedB0522
MELO3C002108.2Silver-seed gourdcarmedB0397
MELO3C002108.2Silver-seed gourdcarmedB0605
MELO3C002108.2Silver-seed gourdcarmedB0795
MELO3C002108.2Cucumber (Chinese Long) v3cucmedB024
MELO3C002108.2Watermelon (97103) v2medwmbB147
MELO3C002108.2Watermelon (97103) v2medwmbB150