Lsi02G002100 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G002100
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr02 : 1741532 .. 1741756 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGACTAATGAGAGAAATTGGCAGTGAAAATGGAAGTTTTGGCTTCGCCGGCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCGTAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCTGATGTTGAGCTTTACGGCGGTGGTTGTGCCGCCGGGTGCGGCGCTGGATGTGGTGCTTGA

mRNA sequence

ATGGCGAGACTAATGAGAGAAATTGGCAGTGAAAATGGAAGTTTTGGCTTCGCCGGCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCGTAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCTGATGTTGAGCTTTACGGCGGTGGTTGTGCCGCCGGGTGCGGCGCTGGATGTGGTGCTTGA

Coding sequence (CDS)

ATGGCGAGACTAATGAGAGAAATTGGCAGTGAAAATGGAAGTTTTGGCTTCGCCGGCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCGTAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCTGATGTTGAGCTTTACGGCGGTGGTTGTGCCGCCGGGTGCGGCGCTGGATGTGGTGCTTGA

Protein sequence

MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

Homology

[Close]

BLAST of Lsi02G002100 vs. TrEMBL
Match: A0A0A0LQU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.3e-29
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          MARLMREI S+NGSFG AGG+ Y LFW ALFTLCIIST+IFSCSDGMSK+RNST DVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGAGCGA 75
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of Lsi02G002100 vs. TrEMBL
Match: M5WF59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027081mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.9e-14
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGM-SKERNSTADVEL 60
          M R+ REIGS +G    A    +L+FWAAL +LC++S ++FSC+DG+ SKE+N+  D +L
Sbjct: 1  MVRVWREIGSVDGGVATAN---WLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKL 60

Query: 61 YGGGCAAGCGAGCGA 75
          YGGGCAA CGA CGA
Sbjct: 61 YGGGCAAECGAACGA 72

[Close]

BLAST of Lsi02G002100 vs. TrEMBL
Match: B9I2J4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05020g PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-13
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          M R ++E+ +  GS G   G   +L WA L TLC++S ++FSC++G+SK++ S AD  LY
Sbjct: 1  MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 61 GGGCAAGCGAGCG 74
          GGGCAAGCGA CG
Sbjct: 61 GGGCAAGCGAACG 73

[Close]

BLAST of Lsi02G002100 vs. TrEMBL
Match: W9SC63_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013262 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-12
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 1  MARLMREIGSENGSFGFAGGDIY--LLFWAALF-TLCIISTVIFSCSDGMSKERNSTADV 60
          M RL RE    +G  G  GG  +  L+F   L  TLCI+STVIFSC+DG+SKE++S+AD 
Sbjct: 1  MVRLSREAADLDGIIGGGGGGGFGFLVFVLGLLVTLCIVSTVIFSCADGVSKEKSSSADT 60

Query: 61 ELY-GGGCAAGCGAGCG 74
          ELY GGGCAAGCGA CG
Sbjct: 61 ELYGGGGCAAGCGAACG 77

[Close]

BLAST of Lsi02G002100 vs. TrEMBL
Match: A0A0S3TC65_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G231500 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          M R +RE+   + + GF G   Y ++   L T CII  +IFSC+DG+SKE++S AD E Y
Sbjct: 1  MVRELREVKIVDANIGFYGNG-YAIWLMILVTFCIIPAIIFSCADGVSKEKSSAADEEPY 60

Query: 61 GGGCAAGCGAGCGA 75
          G  C AGCGAGCGA
Sbjct: 61 GAACGAGCGAGCGA 73

[Close]

BLAST of Lsi02G002100 vs. TAIR10
Match: AT1G68238.1 (AT1G68238.1 unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 9.1e-07
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 1


Query: 20 GDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCG 74
          G++ L  WAA+    +I+ VIFSCSD  SK   +    ++ G  CAAGCG GCG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND---DVNGSSCAAGCGGGCG 64

[Close]

BLAST of Lsi02G002100 vs. NCBI nr
Match: gi|700209052|gb|KGN64148.1| (hypothetical protein Csa_1G042580 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-28
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          MARLMREI S+NGSFG AGG+ Y LFW ALFTLCIIST+IFSCSDGMSK+RNST DVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGAGCGA 75
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of Lsi02G002100 vs. NCBI nr
Match: gi|659066784|ref|XP_008461221.1| (PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-28
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 1   MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
           MAR+MREI  +NGSFG AGG+ Y LFW ALFTLCIISTVIFSCSDGMSK+RNST DVELY
Sbjct: 36  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 95

Query: 61  GGGCAAGCGAGCGA 75
           GGGCAAGCGAGCGA
Sbjct: 96  GGGCAAGCGAGCGA 109

[Close]

BLAST of Lsi02G002100 vs. NCBI nr
Match: gi|1009131358|ref|XP_015882794.1| (PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-16
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 1


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          M RL R++ S +GS G AG   +++ W AL  +CIIS +IFSC+DG+SKE+ STAD ELY
Sbjct: 1  MVRLWRDLASVHGS-GSAG---FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 61 GGGCAAGCGAGCGA 75
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 70

[Close]

BLAST of Lsi02G002100 vs. NCBI nr
Match: gi|595860517|ref|XP_007211155.1| (hypothetical protein PRUPE_ppa027081mg [Prunus persica])

HSP 1 Score: 85.1 bits (209), Expect = 5.6e-14
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGM-SKERNSTADVEL 60
          M R+ REIGS +G    A    +L+FWAAL +LC++S ++FSC+DG+ SKE+N+  D +L
Sbjct: 1  MVRVWREIGSVDGGVATAN---WLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKL 60

Query: 61 YGGGCAAGCGAGCGA 75
          YGGGCAA CGA CGA
Sbjct: 61 YGGGCAAECGAACGA 72

[Close]

BLAST of Lsi02G002100 vs. NCBI nr
Match: gi|224121254|ref|XP_002318537.1| (hypothetical protein POPTR_0012s05020g [Populus trichocarpa])

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 1  MARLMREIGSENGSFGFAGGDIYLLFWAALFTLCIISTVIFSCSDGMSKERNSTADVELY 60
          M R ++E+ +  GS G   G   +L WA L TLC++S ++FSC++G+SK++ S AD  LY
Sbjct: 1  MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 61 GGGCAAGCGAGCG 74
          GGGCAAGCGA CG
Sbjct: 61 GGGCAAGCGAACG 73

The following BLAST results are available for this feature:

BLAST of Lsi02G002100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G002100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU7_CUCSA	7.3e-29	86.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042580 PE=4 SV=1	[more]
M5WF59_PRUPE	3.9e-14	56.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027081mg PE=4 SV=1	[more]
B9I2J4_POPTR	1.5e-13	52.05	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05020g PE=4 SV=1	[more]
W9SC63_9ROSA	1.2e-12	59.74	Uncharacterized protein OS=Morus notabilis GN=L484_013262 PE=4 SV=1	[more]
A0A0S3TC65_PHAAN	3.1e-11	51.35	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G231500 PE=...	[more]

BLAST of Lsi02G002100 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68238.1	9.1e-07	46.30	unknown protein	[more]

BLAST of Lsi02G002100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209052\|gb\|KGN64148.1\|	1.0e-28	86.49	hypothetical protein Csa_1G042580 [Cucumis sativus]	[more]
gi\|659066784\|ref\|XP_008461221.1\|	2.3e-28	85.14	PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo]	[more]
gi\|1009131358\|ref\|XP_015882794.1\|	2.7e-16	63.51	PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba]	[more]
gi\|595860517\|ref\|XP_007211155.1\|	5.6e-14	56.00	hypothetical protein PRUPE_ppa027081mg [Prunus persica]	[more]
gi\|224121254\|ref\|XP_002318537.1\|	2.1e-13	52.05	hypothetical protein POPTR_0012s05020g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G002100.1	Lsi02G002100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	FAMILY NOT NAMED	coord: 2..74 score: 1.8
None	No IPR available	PANTHER	PTHR37199:SF1	MEMBRANE LIPOPROTEIN-RELATED	coord: 2..74 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G002100	Csa1G042580	Cucumber (Chinese Long) v2	culsiB022
Lsi02G002100	CSPI01G06980	Wild cucumber (PI 183967)	cpilsiB021
Lsi02G002100	CmaCh13G010090	Cucurbita maxima (Rimu)	cmalsiB208
Lsi02G002100	CmoCh13G010470	Cucurbita moschata (Rifu)	cmolsiB198
Lsi02G002100	Cla018478	Watermelon (97103) v1	lsiwmB212
Lsi02G002100	MELO3C002108	Melon (DHL92) v3.5.1	lsimeB179
Lsi02G002100	ClCG04G010920	Watermelon (Charleston Gray)	lsiwcgB192
Lsi02G002100	MELO3C002108.2	Melon (DHL92) v3.6.1	lsimedB189
Lsi02G002100	Bhi08G001050	Wax gourd	lsiwgoB238
Lsi02G002100	Cp4.1LG20g01230	Cucurbita pepo (Zucchini)	cpelsiB418
Lsi02G002100	Cp4.1LG09g11320	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G002100	CsGy1G006810	Cucumber (Gy14) v2	cgyblsiB018
Lsi02G002100	CsaV3_1G006920	Cucumber (Chinese Long) v3	cuclsiB022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G002100	Silver-seed gourd	carlsiB353
Lsi02G002100	Silver-seed gourd	carlsiB467
Lsi02G002100	Silver-seed gourd	carlsiB538
Lsi02G002100	Silver-seed gourd	carlsiB724
Lsi02G002100	Cucumber (Chinese Long) v3	cuclsiB024
Lsi02G002100	Watermelon (97103) v2	lsiwmbB184
Lsi02G002100	Watermelon (97103) v2	lsiwmbB195
Lsi02G002100	Bottle gourd (USVL1VR-Ls)	lsilsiB113
Lsi02G002100	Cucumber (Gy14) v1	cgylsiB149
Lsi02G002100	Cucumber (Gy14) v1	cgylsiB181
Lsi02G002100	Cucurbita maxima (Rimu)	cmalsiB106
Lsi02G002100	Cucurbita maxima (Rimu)	cmalsiB370
Lsi02G002100	Cucurbita moschata (Rifu)	cmolsiB040
Lsi02G002100	Cucurbita moschata (Rifu)	cmolsiB094
Lsi02G002100	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G002100	Cucurbita pepo (Zucchini)	cpelsiB294
Lsi02G002100	Cucurbita pepo (Zucchini)	cpelsiB542
Lsi02G002100	Wild cucumber (PI 183967)	cpilsiB025
Lsi02G002100	Cucumber (Chinese Long) v2	culsiB025
Lsi02G002100	Melon (DHL92) v3.5.1	lsimeB209
Lsi02G002100	Watermelon (Charleston Gray)	lsiwcgB201
Lsi02G002100	Watermelon (97103) v1	lsiwmB223
Lsi02G002100	Cucumber (Gy14) v2	cgyblsiB021
Lsi02G002100	Melon (DHL92) v3.6.1	lsimedB216