CSPI01G06980 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G06980
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 4401927 .. 4402439 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAATTGAACTTTTGAGCACTATAAAAGCAGCTCATGGACAATGAAAACTTCCCAAAAAAACAAGAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTGTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGAAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGAAAAATAGACAACCTCTGGCCTTCTTCTTTTCTTCTTCTTCTTTTTCTTCTATAGGAAACAAATTATGTTTTGGGTTTTTAAAGCCATGAGAGAAACAGAGAGAGAGTTTGTTTTGAAGATACTGATTGACATCAATTTTGTTACATTTTCATCGTGATTTAGCAAC

mRNA sequence

ATGGACAATGAAAACTTCCCAAAAAAACAAGAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTGTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGAAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGA

Coding sequence (CDS)

ATGGACAATGAAAACTTCCCAAAAAAACAAGAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTGTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGAAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGA
Homology
[Close]
BLAST of CSPI01G06980 vs. TrEMBL
Match: A0A0A0LQU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 88
           MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIIST+IFSCSDGMSKDRNSTVDVELY
Sbjct: 1   MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 89  GGGCAAGCGAGCGA 103
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 74

[Close]
BLAST of CSPI01G06980 vs. TrEMBL
Match: B9I2J4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05020g PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.6e-13
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 

Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 88
           M R ++E+ +  GS G   G    L W  L TLC++S ++FSC++G+SKD+ S  D  LY
Sbjct: 1   MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 89  GGGCAAGCGAGCG 102
           GGGCAAGCGA CG
Sbjct: 61  GGGCAAGCGAACG 73

[Close]
BLAST of CSPI01G06980 vs. TrEMBL
Match: W9SC63_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013262 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-12
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1 

Query: 29  MARLMREISSQNGSFGLAGGETY-WLFWVA--LFTLCIISTVIFSCSDGMSKDRNSTVDV 88
           M RL RE +  +G  G  GG  + +L +V   L TLCI+STVIFSC+DG+SK+++S+ D 
Sbjct: 1   MVRLSREAADLDGIIGGGGGGGFGFLVFVLGLLVTLCIVSTVIFSCADGVSKEKSSSADT 60

Query: 89  ELY-GGGCAAGCGAGCG 102
           ELY GGGCAAGCGA CG
Sbjct: 61  ELYGGGGCAAGCGAACG 77

[Close]
BLAST of CSPI01G06980 vs. TrEMBL
Match: M5WF59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027081mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 29  MARLMREISSQNGSFGLAGGETYWL-FWVALFTLCIISTVIFSCSDGM-SKDRNSTVDVE 88
           M R+ REI S +G    A     WL FW AL +LC++S ++FSC+DG+ SK++N+  D +
Sbjct: 1   MVRVWREIGSVDGGVATAN----WLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTK 60

Query: 89  LYGGGCAAGCGAGCGA 103
           LYGGGCAA CGA CGA
Sbjct: 61  LYGGGCAAECGAACGA 72

[Close]
BLAST of CSPI01G06980 vs. TrEMBL
Match: A0A061G243_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_012438 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.6e-11
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1 

Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 88
           M R ++ I+      G  GG    +FW AL TL +IS +IFSC+DG+SKD+ S+ D   Y
Sbjct: 1   MVRELKIITENGDGIGGIGGACL-VFWAALLTLSLISAIIFSCADGVSKDKTSSGDTNFY 60

Query: 89  GGGCAAGC-GAGCGA 103
           GGGCAA C GAGCGA
Sbjct: 61  GGGCAADCGGAGCGA 74

[Close]
BLAST of CSPI01G06980 vs. TAIR10
Match: AT1G68238.1 (AT1G68238.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.3e-06
Identity = 24/54 (44.44%), Postives = 30/54 (55.56%), Query Frame = 1 

Query: 48  GETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCG 102
           GE     W A+    +I+ VIFSCSD  SK   +    ++ G  CAAGCG GCG
Sbjct: 14  GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND---DVNGSSCAAGCGGGCG 64

[Close]
BLAST of CSPI01G06980 vs. NCBI nr
Match: gi|659066784|ref|XP_008461221.1| (PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo])

HSP 1 Score: 199.1 bits (505), Expect = 3.7e-48
Identity = 99/109 (90.83%), Postives = 101/109 (92.66%), Query Frame = 1 

Query: 1   MDNENFPKKQELNWVSSLYSLKPIS-------IVKMARLMREISSQNGSFGLAGGETYWL 60
           MDNENFPKKQEL+WVSSLYSLKPIS       IVKMAR+MREIS QNGSFGLAGGETYWL
Sbjct: 1   MDNENFPKKQELDWVSSLYSLKPISRKKKEREIVKMARIMREISGQNGSFGLAGGETYWL 60

Query: 61  FWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA 103
           FWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA
Sbjct: 61  FWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA 109

[Close]
BLAST of CSPI01G06980 vs. NCBI nr
Match: gi|700209052|gb|KGN64148.1| (hypothetical protein Csa_1G042580 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-34
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 88
           MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIIST+IFSCSDGMSKDRNSTVDVELY
Sbjct: 1   MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 89  GGGCAAGCGAGCGA 103
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 74

[Close]
BLAST of CSPI01G06980 vs. NCBI nr
Match: gi|1009131358|ref|XP_015882794.1| (PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 88
           M RL R+++S +GS G AG   + + W+AL  +CIIS +IFSC+DG+SK++ ST D ELY
Sbjct: 1   MVRLWRDLASVHGS-GSAG---FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 89  GGGCAAGCGAGCGA 103
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 70

[Close]
BLAST of CSPI01G06980 vs. NCBI nr
Match: gi|224121254|ref|XP_002318537.1| (hypothetical protein POPTR_0012s05020g [Populus trichocarpa])

HSP 1 Score: 82.0 bits (201), Expect = 6.6e-13
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 

Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 88
           M R ++E+ +  GS G   G    L W  L TLC++S ++FSC++G+SKD+ S  D  LY
Sbjct: 1   MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 89  GGGCAAGCGAGCG 102
           GGGCAAGCGA CG
Sbjct: 61  GGGCAAGCGAACG 73

[Close]
BLAST of CSPI01G06980 vs. NCBI nr
Match: gi|743920082|ref|XP_011004079.1| (PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica])

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1 

Query: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 88
           M R ++E+ + +G  G   G      W  L TLC++S ++FSC++G+SKD+ S  D  LY
Sbjct: 1   MVRPLKEVLAVDGGGGGLDGSCLVFLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 89  GGGCAAGCGAGCG 102
           GGGCAAGCGA CG
Sbjct: 61  GGGCAAGCGAACG 73

The following BLAST results are available for this feature:
BLAST of CSPI01G06980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G06980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQU7_CUCSA1.6e-3498.65Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042580 PE=4 SV=1[more]
B9I2J4_POPTR4.6e-1350.68Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05020g PE=4 SV=1[more]
W9SC63_9ROSA2.3e-1257.14Uncharacterized protein OS=Morus notabilis GN=L484_013262 PE=4 SV=1[more]
M5WF59_PRUPE3.9e-1252.63Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027081mg PE=4 SV=1[more]
A0A061G243_THECC5.6e-1152.00Uncharacterized protein OS=Theobroma cacao GN=TCM_012438 PE=4 SV=1[more]
BLAST of CSPI01G06980 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68238.16.3e-0644.44 unknown protein[more]
BLAST of CSPI01G06980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659066784|ref|XP_008461221.1|3.7e-4890.83PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo][more]
gi|700209052|gb|KGN64148.1|2.3e-3498.65hypothetical protein Csa_1G042580 [Cucumis sativus][more]
gi|1009131358|ref|XP_015882794.1|1.4e-1560.81PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba][more]
gi|224121254|ref|XP_002318537.1|6.6e-1350.68hypothetical protein POPTR_0012s05020g [Populus trichocarpa][more]
gi|743920082|ref|XP_011004079.1|1.9e-1247.95PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G06980.1CSPI01G06980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199FAMILY NOT NAMEDcoord: 30..102
score: 4.2
NoneNo IPR availablePANTHERPTHR37199:SF1MEMBRANE LIPOPROTEIN-RELATEDcoord: 30..102
score: 4.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G06980Cla018478Watermelon (97103) v1cpiwmB066
CSPI01G06980Csa1G042580Cucumber (Chinese Long) v2cpicuB000
CSPI01G06980MELO3C002108Melon (DHL92) v3.5.1cpimeB024
CSPI01G06980ClCG04G010920Watermelon (Charleston Gray)cpiwcgB059
CSPI01G06980Lsi02G002100Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G06980MELO3C002108.2Melon (DHL92) v3.6.1cpimedB023
CSPI01G06980CsaV3_1G006920Cucumber (Chinese Long) v3cpicucB001
CSPI01G06980Bhi08G001050Wax gourdcpiwgoB028
CSPI01G06980CmaCh13G010090Cucurbita maxima (Rimu)cmacpiB218
CSPI01G06980CmoCh13G010470Cucurbita moschata (Rifu)cmocpiB204
CSPI01G06980Cp4.1LG20g01230Cucurbita pepo (Zucchini)cpecpiB505
CSPI01G06980Cp4.1LG09g11320Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G06980CsGy1G006810Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G06980Cucurbita maxima (Rimu)cmacpiB394
CSPI01G06980Wild cucumber (PI 183967)cpicpiB001
CSPI01G06980Cucumber (Gy14) v1cgycpiB139
CSPI01G06980Cucumber (Gy14) v1cgycpiB160
CSPI01G06980Cucurbita maxima (Rimu)cmacpiB057
CSPI01G06980Cucurbita maxima (Rimu)cmacpiB087
CSPI01G06980Cucurbita moschata (Rifu)cmocpiB049
CSPI01G06980Cucurbita moschata (Rifu)cmocpiB080
CSPI01G06980Cucurbita moschata (Rifu)cmocpiB383
CSPI01G06980Cucumber (Chinese Long) v2cpicuB003
CSPI01G06980Melon (DHL92) v3.5.1cpimeB058
CSPI01G06980Watermelon (Charleston Gray)cpiwcgB085
CSPI01G06980Watermelon (97103) v1cpiwmB101
CSPI01G06980Cucurbita pepo (Zucchini)cpecpiB369
CSPI01G06980Cucurbita pepo (Zucchini)cpecpiB658
CSPI01G06980Bottle gourd (USVL1VR-Ls)cpilsiB072
CSPI01G06980Melon (DHL92) v3.6.1cpimedB052
CSPI01G06980Cucumber (Gy14) v2cgybcpiB003
CSPI01G06980Silver-seed gourdcarcpiB0418
CSPI01G06980Silver-seed gourdcarcpiB0549
CSPI01G06980Silver-seed gourdcarcpiB0629
CSPI01G06980Cucumber (Chinese Long) v3cpicucB002
CSPI01G06980Watermelon (97103) v2cpiwmbB055
CSPI01G06980Watermelon (97103) v2cpiwmbB081