Cp4.1LG09g11320 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g11320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG09 : 9697653 .. 9697862 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGACTGATCGGAGAGATTGGCAGCGTTAATGGAAGTTTTCGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCAGACGTTGAGCTGTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

mRNA sequence

ATGGCCAGACTGATCGGAGAGATTGGCAGCGTTAATGGAAGTTTTCGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCAGACGTTGAGCTGTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

Coding sequence (CDS)

ATGGCCAGACTGATCGGAGAGATTGGCAGCGTTAATGGAAGTTTTCGCCTCTCCGGTGACATTTCTTGCCTCTTCTTGGCGGCTCTGTTTACACTCTGTATTATCTCCCTTATAACTTTCTCTTGCTCCGATGGCATCTCAAAGGAGAGGAATTCCACGGCAGACGTTGAGCTGTACGGCGGCGGTTGCGCCGCCGGGTGTGGTGCTTGA

Protein sequence

MARLIGEIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYGGGCAAGCGA
Homology
[Close]
BLAST of Cp4.1LG09g11320 vs. TrEMBL
Match: A0A0A0LQU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.2e-18
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 1  MARLIGEIGSVNGSFRLSG-DISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          MARL+ EI S NGSF L+G +   LF  ALFTLCIIS + FSCSDG+SK+RNST DVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGA 70
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 70

[Close]
BLAST of Cp4.1LG09g11320 vs. TrEMBL
Match: A0A151TET4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_011800 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-09
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 1  MARLIGEIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60
          M R +GE+  V+ +    G+   + L  L T CII  I FSC+DG+SKE+ S AD E YG
Sbjct: 1  MVRELGEVKIVDANLGFFGNAYAILLVVLVTFCIIPAIIFSCADGVSKEKTSAADQEPYG 60

Query: 61 GGCAAGCGA 70
           GC AGCGA
Sbjct: 61 AGCGAGCGA 69

[Close]
BLAST of Cp4.1LG09g11320 vs. TrEMBL
Match: M5WF59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027081mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-09
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 1  MARLIGEIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGI-SKERNSTADVELY 60
          M R+  EIGSV+G    +  +  +F AAL +LC++S I FSC+DG+ SKE+N+  D +LY
Sbjct: 1  MVRVWREIGSVDGGVATANWL--VFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKLY 60

Query: 61 GGGCAAGCGA 70
          GGGCAA CGA
Sbjct: 61 GGGCAAECGA 68

[Close]
BLAST of Cp4.1LG09g11320 vs. TrEMBL
Match: B9I2J4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05020g PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.8e-09
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1 

Query: 4  LIGEIGSVNGSFRLSGDISCLFL--AALFTLCIISLITFSCSDGISKERNSTADVELYGG 63
          ++G  G V+GS        CL L  A L TLC++S I FSC++G+SK++ S AD  LYGG
Sbjct: 11 VVGSGGGVHGS--------CLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLYGG 70

Query: 64 GCAAGCGA 70
          GCAAGCGA
Sbjct: 71 GCAAGCGA 70

[Close]
BLAST of Cp4.1LG09g11320 vs. TrEMBL
Match: W9SC63_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013262 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-08
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 26 LAALFTLCIISLITFSCSDGISKERNSTADVELY-GGGCAAGCGA 70
          L  L TLCI+S + FSC+DG+SKE++S+AD ELY GGGCAAGCGA
Sbjct: 30 LGLLVTLCIVSTVIFSCADGVSKEKSSSADTELYGGGGCAAGCGA 74

[Close]
BLAST of Cp4.1LG09g11320 vs. NCBI nr
Match: gi|700209052|gb|KGN64148.1| (hypothetical protein Csa_1G042580 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 1  MARLIGEIGSVNGSFRLSG-DISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
          MARL+ EI S NGSF L+G +   LF  ALFTLCIIS + FSCSDG+SK+RNST DVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGA 70
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 70

[Close]
BLAST of Cp4.1LG09g11320 vs. NCBI nr
Match: gi|659066784|ref|XP_008461221.1| (PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 5.0e-17
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 1 

Query: 1   MARLIGEIGSVNGSFRLSG-DISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60
           MAR++ EI   NGSF L+G +   LF  ALFTLCIIS + FSCSDG+SK+RNST DVELY
Sbjct: 36  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 95

Query: 61  GGGCAAGCGA 70
           GGGCAAGCGA
Sbjct: 96  GGGCAAGCGA 105

[Close]
BLAST of Cp4.1LG09g11320 vs. NCBI nr
Match: gi|1009131358|ref|XP_015882794.1| (PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-10
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 1 

Query: 1  MARLIGEIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60
          M RL  ++ SV+GS   S     L+LA L  +CIIS I FSC+DG+SKE+ STAD ELYG
Sbjct: 1  MVRLWRDLASVHGSG--SAGFVVLWLA-LLGVCIISAIIFSCADGVSKEKTSTADTELYG 60

Query: 61 GGCAAGCGA 70
          GGCAAGCGA
Sbjct: 61 GGCAAGCGA 66

[Close]
BLAST of Cp4.1LG09g11320 vs. NCBI nr
Match: gi|1012354367|gb|KYP65554.1| (hypothetical protein KK1_011800 [Cajanus cajan])

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-09
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 1  MARLIGEIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60
          M R +GE+  V+ +    G+   + L  L T CII  I FSC+DG+SKE+ S AD E YG
Sbjct: 1  MVRELGEVKIVDANLGFFGNAYAILLVVLVTFCIIPAIIFSCADGVSKEKTSAADQEPYG 60

Query: 61 GGCAAGCGA 70
           GC AGCGA
Sbjct: 61 AGCGAGCGA 69

[Close]
BLAST of Cp4.1LG09g11320 vs. NCBI nr
Match: gi|595860517|ref|XP_007211155.1| (hypothetical protein PRUPE_ppa027081mg [Prunus persica])

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-09
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 1  MARLIGEIGSVNGSFRLSGDISCLFLAALFTLCIISLITFSCSDGI-SKERNSTADVELY 60
          M R+  EIGSV+G    +  +  +F AAL +LC++S I FSC+DG+ SKE+N+  D +LY
Sbjct: 1  MVRVWREIGSVDGGVATANWL--VFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKLY 60

Query: 61 GGGCAAGCGA 70
          GGGCAA CGA
Sbjct: 61 GGGCAAECGA 68

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g11320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g11320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQU7_CUCSA9.2e-1872.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042580 PE=4 SV=1[more]
A0A151TET4_CAJCA1.2e-0949.28Uncharacterized protein OS=Cajanus cajan GN=KK1_011800 PE=4 SV=1[more]
M5WF59_PRUPE1.6e-0952.86Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027081mg PE=4 SV=1[more]
B9I2J4_POPTR7.8e-0952.94Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05020g PE=4 SV=1[more]
W9SC63_9ROSA3.0e-0868.89Uncharacterized protein OS=Morus notabilis GN=L484_013262 PE=4 SV=1[more]
BLAST of Cp4.1LG09g11320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g11320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209052|gb|KGN64148.1|1.3e-1772.86hypothetical protein Csa_1G042580 [Cucumis sativus][more]
gi|659066784|ref|XP_008461221.1|5.0e-1770.00PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo][more]
gi|1009131358|ref|XP_015882794.1|1.2e-1060.87PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba][more]
gi|1012354367|gb|KYP65554.1|1.7e-0949.28hypothetical protein KK1_011800 [Cajanus cajan][more]
gi|595860517|ref|XP_007211155.1|2.3e-0952.86hypothetical protein PRUPE_ppa027081mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g11320.1Cp4.1LG09g11320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199FAMILY NOT NAMEDcoord: 2..69
score: 1.6
NoneNo IPR availablePANTHERPTHR37199:SF1MEMBRANE LIPOPROTEIN-RELATEDcoord: 2..69
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g11320CmaCh13G010090Cucurbita maxima (Rimu)cmacpeB213
Cp4.1LG09g11320CmoCh13G010470Cucurbita moschata (Rifu)cmocpeB183
Cp4.1LG09g11320Cla018478Watermelon (97103) v1cpewmB049
Cp4.1LG09g11320Csa1G042580Cucumber (Chinese Long) v2cpecuB029
Cp4.1LG09g11320MELO3C002108Melon (DHL92) v3.5.1cpemeB026
Cp4.1LG09g11320ClCG04G010920Watermelon (Charleston Gray)cpewcgB038
Cp4.1LG09g11320CSPI01G06980Wild cucumber (PI 183967)cpecpiB025
Cp4.1LG09g11320Lsi02G002100Bottle gourd (USVL1VR-Ls)cpelsiB026
Cp4.1LG09g11320MELO3C002108.2Melon (DHL92) v3.6.1cpemedB031
Cp4.1LG09g11320CsaV3_1G006920Cucumber (Chinese Long) v3cpecucB0031
Cp4.1LG09g11320Bhi08G001050Wax gourdcpewgoB0045
Cp4.1LG09g11320CsGy1G006810Cucumber (Gy14) v2cgybcpeB018
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g11320Cp4.1LG20g01230Cucurbita pepo (Zucchini)cpecpeB049
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g11320Cucumber (Chinese Long) v3cpecucB0033
Cp4.1LG09g11320Cucurbita pepo (Zucchini)cpecpeB027
Cp4.1LG09g11320Cucurbita pepo (Zucchini)cpecpeB053
Cp4.1LG09g11320Cucumber (Gy14) v1cgycpeB0250
Cp4.1LG09g11320Cucumber (Gy14) v1cgycpeB0306
Cp4.1LG09g11320Cucurbita maxima (Rimu)cmacpeB073
Cp4.1LG09g11320Cucurbita maxima (Rimu)cmacpeB106
Cp4.1LG09g11320Cucurbita maxima (Rimu)cmacpeB416
Cp4.1LG09g11320Cucurbita moschata (Rifu)cmocpeB047
Cp4.1LG09g11320Cucurbita moschata (Rifu)cmocpeB083
Cp4.1LG09g11320Cucurbita moschata (Rifu)cmocpeB377
Cp4.1LG09g11320Wild cucumber (PI 183967)cpecpiB027
Cp4.1LG09g11320Cucumber (Chinese Long) v2cpecuB031
Cp4.1LG09g11320Bottle gourd (USVL1VR-Ls)cpelsiB040
Cp4.1LG09g11320Watermelon (Charleston Gray)cpewcgB048
Cp4.1LG09g11320Watermelon (97103) v1cpewmB058
Cp4.1LG09g11320Melon (DHL92) v3.5.1cpemeB033
Cp4.1LG09g11320Cucumber (Gy14) v2cgybcpeB020
Cp4.1LG09g11320Melon (DHL92) v3.6.1cpemedB038
Cp4.1LG09g11320Silver-seed gourdcarcpeB0539
Cp4.1LG09g11320Silver-seed gourdcarcpeB0722
Cp4.1LG09g11320Silver-seed gourdcarcpeB0840