CsaV3_1G006920 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006920
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionMembrane protein insertion efficiency factor like
Locationchr1 : 4392495 .. 4393177 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAATTGAACTTTTGAGCACTATAAAAGCAGCTCATGGACAATGAAAACTTCCCAAAAAAACAACAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGAAAAATAGACAACCTCTGGCCTTCTTCTTTTCTTCTTCTTCTTTTTCTTCTATAGGAAACAAATTATGTTTTGGGTTTTTAAAGCCATGAGAGAAACAGAGAGAGAGCTTGTTTTGAAGATACTGATTGACATCAATTTTGTTACATTTTCATCGTGATTTAGCAACCTCCAGTTTAGTACTTCTCTTTTATTATTGTTATTATCATTATAGTGTTGATACAAATAGTTAGACGTTCTAACATGATTTGCTTTCTTTACCATGCAAGGCTTAGGTTTTATATAGATGCCTTACATATCTTTATATCTTCCAAATATCACAGTCTTTAACAAGTATCCGT

mRNA sequence

ATGGACAATGAAAACTTCCCAAAAAAACAACAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGA

Coding sequence (CDS)

ATGGACAATGAAAACTTCCCAAAAAAACAACAACTCAATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCTATTGTAAAAATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGA

Protein sequence

MDNENFPKKQQLNWVSSLYSLKPISIVKMARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA
Homology
[Close]
BLAST of CsaV3_1G006920 vs. NCBI nr
Match: KGN64148.1 (hypothetical protein Csa_1G042580 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 2.6e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 29 MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88
          MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 89 GGGCA 94
          GGGCA
Sbjct: 61 GGGCA 65

[Close]
BLAST of CsaV3_1G006920 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 0 

Query: 29 MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88
          M RL R+++S +GS    G   + + W+AL  +CIIS +IFSC+DG+SK++ ST D ELY
Sbjct: 1  MVRLWRDLASVHGS----GSAGFVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 89 GGGCA 94
          GGGCA
Sbjct: 61 GGGCA 61

[Close]
BLAST of CsaV3_1G006920 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 72.8 bits (177), Expect = 7.7e-10
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 29 MARLMREISSQNGSFGLAGGETYWLFWVALF-TLCIISTLIFSCSDGMSKDRNSTVDVEL 88
          M RL RE +  +G  G +   T+ +F++ L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 89 YGGGCA 94
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]
BLAST of CsaV3_1G006920 vs. NCBI nr
Match: POO01897.1 (hypothetical protein TorRG33x02_021890 [Trema orientalis])

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 29 MARLMREISSQNGSFGLAGGETYWLFWVALF-TLCIISTLIFSCSDGMSKDRNSTVDVEL 88
          M RL RE +  +G  G +   T+ +F + L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 89 YGGGCA 94
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]
BLAST of CsaV3_1G006920 vs. NCBI nr
Match: PNT09599.1 (hypothetical protein POPTR_012G054000v3 [Populus trichocarpa])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 0 

Query: 29 MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88
          M R ++E+ +  GS G   G    L W  L TLC++S ++FSC++G+SKD+ S  D  LY
Sbjct: 1  MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 89 GGGCA 94
          GGGCA
Sbjct: 61 GGGCA 65

[Close]
BLAST of CsaV3_1G006920 vs. TrEMBL
Match: tr|A0A0A0LQU7|A0A0A0LQU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 29 MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88
          MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 89 GGGCA 94
          GGGCA
Sbjct: 61 GGGCA 65

[Close]
BLAST of CsaV3_1G006920 vs. TrEMBL
Match: tr|A0A2P5AQX4|A0A2P5AQX4_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-10
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 29 MARLMREISSQNGSFGLAGGETYWLFWVALF-TLCIISTLIFSCSDGMSKDRNSTVDVEL 88
          M RL RE +  +G  G +   T+ +F++ L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 89 YGGGCA 94
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]
BLAST of CsaV3_1G006920 vs. TrEMBL
Match: tr|A0A2P5FVW4|A0A2P5FVW4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021890 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 29 MARLMREISSQNGSFGLAGGETYWLFWVALF-TLCIISTLIFSCSDGMSKDRNSTVDVEL 88
          M RL RE +  +G  G +   T+ +F + L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 89 YGGGCA 94
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]
BLAST of CsaV3_1G006920 vs. TrEMBL
Match: tr|B9I2J4|B9I2J4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G054000v3 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.6e-09
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 0 

Query: 29 MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88
          M R ++E+ +  GS G   G    L W  L TLC++S ++FSC++G+SKD+ S  D  LY
Sbjct: 1  MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 89 GGGCA 94
          GGGCA
Sbjct: 61 GGGCA 65

[Close]
BLAST of CsaV3_1G006920 vs. TrEMBL
Match: tr|M5WF59|M5WF59_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G224700 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 29 MARLMREISSQNGSFGLAGGETYWL-FWVALFTLCIISTLIFSCSDGM-SKDRNSTVDVE 88
          M R+ REI S +G    A     WL FW AL +LC++S ++FSC+DG+ SK++N+  D +
Sbjct: 1  MVRVWREIGSVDGGVATAN----WLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTK 60

Query: 89 LYGGGCA 94
          LYGGGCA
Sbjct: 61 LYGGGCA 63

The following BLAST results are available for this feature:
BLAST of CsaV3_1G006920 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64148.12.6e-29100.00hypothetical protein Csa_1G042580 [Cucumis sativus][more]
XP_015882794.13.5e-1052.31uncharacterized protein LOC107418606 [Ziziphus jujuba][more]
PON38946.17.7e-1051.52hypothetical protein PanWU01x14_308610 [Parasponia andersonii][more]
POO01897.12.2e-0951.52hypothetical protein TorRG33x02_021890 [Trema orientalis][more]
PNT09599.11.5e-0846.15hypothetical protein POPTR_012G054000v3 [Populus trichocarpa][more]
BLAST of CsaV3_1G006920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006920 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQU7|A0A0A0LQU7_CUCSA1.7e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1[more]
tr|A0A2P5AQX4|A0A2P5AQX4_PARAD5.1e-1051.52Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE... [more]
tr|A0A2P5FVW4|A0A2P5FVW4_9ROSA1.5e-0951.52Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021890 PE=4 S... [more]
tr|B9I2J4|B9I2J4_POPTR9.6e-0946.15Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G054000v3 PE=... [more]
tr|M5WF59|M5WF59_PRUPE2.8e-0849.25Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G224700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006920.1CsaV3_1G006920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199FAMILY NOT NAMEDcoord: 29..102
NoneNo IPR availablePANTHERPTHR37199:SF1MEMBRANE LIPOPROTEIN-RELATEDcoord: 29..102

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G006920CSPI01G06980Wild cucumber (PI 183967)cpicucB001
CsaV3_1G006920CmaCh13G010090Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G006920CmoCh13G010470Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G006920Cp4.1LG09g11320Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G006920Cp4.1LG20g01230Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G006920CsGy1G006810Cucumber (Gy14) v2cgybcucB002
CsaV3_1G006920Cla018478Watermelon (97103) v1cucwmB070
CsaV3_1G006920MELO3C002108Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G006920ClCG04G010920Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G006920Lsi02G002100Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G006920MELO3C002108.2Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G006920Bhi08G001050Wax gourdcucwgoB031
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G006920Cucumber (Gy14) v2cgybcucB004
CsaV3_1G006920Cucumber (Gy14) v1cgycucB145
CsaV3_1G006920Cucumber (Gy14) v1cgycucB163
CsaV3_1G006920Cucurbita maxima (Rimu)cmacucB0065
CsaV3_1G006920Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G006920Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G006920Cucurbita moschata (Rifu)cmocucB0052
CsaV3_1G006920Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G006920Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G006920Cucurbita pepo (Zucchini)cpecucB0449
CsaV3_1G006920Cucurbita pepo (Zucchini)cpecucB0816
CsaV3_1G006920Wild cucumber (PI 183967)cpicucB004
CsaV3_1G006920Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G006920Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G006920Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G006920Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G006920Watermelon (97103) v1cucwmB107
CsaV3_1G006920Watermelon (97103) v2cucwmbB054
CsaV3_1G006920Watermelon (97103) v2cucwmbB078
CsaV3_1G006920Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G006920Silver-seed gourdcarcucB0418
CsaV3_1G006920Silver-seed gourdcarcucB0548
CsaV3_1G006920Silver-seed gourdcarcucB0630
CsaV3_1G006920Silver-seed gourdcarcucB0825