CsGy1G006810 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G006810
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 4365024 .. 4365248 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGA

mRNA sequence

ATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGA

Coding sequence (CDS)

ATGGCAAGACTAATGAGAGAAATTAGCAGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTTTGTTTACACTCTGCATAATTTCCACTCTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTTGACGTTGAGCTTTACGGCGGCGGTTGTGCCGCCGGGTGTGGCGCTGGATGTGGTGCTTGA

Protein sequence

MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA

Homology

[Close]

BLAST of CsGy1G006810 vs. NCBI nr
Match: KGN64148.1 (hypothetical protein Csa_1G042580 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60
          MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCA 66
          GGGCA
Sbjct: 61 GGGCA 65

[Close]

BLAST of CsGy1G006810 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60
          M RL R+++S +GS    G   + + W+AL  +CIIS +IFSC+DG+SK++ ST D ELY
Sbjct: 1  MVRLWRDLASVHGS----GSAGFVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 61 GGGCA 66
          GGGCA
Sbjct: 61 GGGCA 61

[Close]

BLAST of CsGy1G006810 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 72.4 bits (176), Expect = 7.3e-10
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MARLMREISSQNGSFGLAGGETYWLFWVALF-TLCIISTLIFSCSDGMSKDRNSTVDVEL 60
          M RL RE +  +G  G +   T+ +F++ L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCA 66
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]

BLAST of CsGy1G006810 vs. NCBI nr
Match: POO01897.1 (hypothetical protein TorRG33x02_021890 [Trema orientalis])

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-09
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1  MARLMREISSQNGSFGLAGGETYWLFWVALF-TLCIISTLIFSCSDGMSKDRNSTVDVEL 60
          M RL RE +  +G  G +   T+ +F + L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCA 66
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]

BLAST of CsGy1G006810 vs. NCBI nr
Match: PNT09599.1 (hypothetical protein POPTR_012G054000v3 [Populus trichocarpa])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60
          M R ++E+ +  GS G   G    L W  L TLC++S ++FSC++G+SKD+ S  D  LY
Sbjct: 1  MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 61 GGGCA 66
          GGGCA
Sbjct: 61 GGGCA 65

[Close]

BLAST of CsGy1G006810 vs. TrEMBL
Match: tr|A0A0A0LQU7|A0A0A0LQU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60
          MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCA 66
          GGGCA
Sbjct: 61 GGGCA 65

[Close]

BLAST of CsGy1G006810 vs. TrEMBL
Match: tr|A0A2P5AQX4|A0A2P5AQX4_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-10
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MARLMREISSQNGSFGLAGGETYWLFWVALF-TLCIISTLIFSCSDGMSKDRNSTVDVEL 60
          M RL RE +  +G  G +   T+ +F++ L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCA 66
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]

BLAST of CsGy1G006810 vs. TrEMBL
Match: tr|A0A2P5FVW4|A0A2P5FVW4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021890 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1  MARLMREISSQNGSFGLAGGETYWLFWVALF-TLCIISTLIFSCSDGMSKDRNSTVDVEL 60
          M RL RE +  +G  G +   T+ +F + L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCA 66
          YGGGCA
Sbjct: 61 YGGGCA 66

[Close]

BLAST of CsGy1G006810 vs. TrEMBL
Match: tr|B9I2J4|B9I2J4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G054000v3 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-09
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60
          M R ++E+ +  GS G   G    L W  L TLC++S ++FSC++G+SKD+ S  D  LY
Sbjct: 1  MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 61 GGGCA 66
          GGGCA
Sbjct: 61 GGGCA 65

[Close]

BLAST of CsGy1G006810 vs. TrEMBL
Match: tr|M5WF59|M5WF59_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G224700 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1  MARLMREISSQNGSFGLAGGETYWL-FWVALFTLCIISTLIFSCSDGM-SKDRNSTVDVE 60
          M R+ REI S +G    A     WL FW AL +LC++S ++FSC+DG+ SK++N+  D +
Sbjct: 1  MVRVWREIGSVDGGVATAN----WLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTK 60

Query: 61 LYGGGCA 66
          LYGGGCA
Sbjct: 61 LYGGGCA 63

The following BLAST results are available for this feature:

BLAST of CsGy1G006810 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64148.1	2.4e-29	100.00	hypothetical protein Csa_1G042580 [Cucumis sativus]	[more]
XP_015882794.1	2.5e-10	52.31	uncharacterized protein LOC107418606 [Ziziphus jujuba]	[more]
PON38946.1	7.3e-10	51.52	hypothetical protein PanWU01x14_308610 [Parasponia andersonii]	[more]
POO01897.1	2.1e-09	51.52	hypothetical protein TorRG33x02_021890 [Trema orientalis]	[more]
PNT09599.1	1.4e-08	46.15	hypothetical protein POPTR_012G054000v3 [Populus trichocarpa]	[more]

BLAST of CsGy1G006810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G006810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G006810 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQU7\|A0A0A0LQU7_CUCSA	1.6e-29	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1	[more]
tr\|A0A2P5AQX4\|A0A2P5AQX4_PARAD	4.8e-10	51.52	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE...	[more]
tr\|A0A2P5FVW4\|A0A2P5FVW4_9ROSA	1.4e-09	51.52	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021890 PE=4 S...	[more]
tr\|B9I2J4\|B9I2J4_POPTR	9.1e-09	46.15	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G054000v3 PE=...	[more]
tr\|M5WF59\|M5WF59_PRUPE	2.0e-08	49.25	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G224700 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G006810.1	CsGy1G006810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	FAMILY NOT NAMED	coord: 1..74
None	No IPR available	PANTHER	PTHR37199:SF1	MEMBRANE LIPOPROTEIN-RELATED	coord: 1..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G006810	Cla018478	Watermelon (97103) v1	cgybwmB064
CsGy1G006810	Csa1G042580	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G006810	MELO3C002108	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G006810	ClCG04G010920	Watermelon (Charleston Gray)	cgybwcgB053
CsGy1G006810	CSPI01G06980	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G006810	CmaCh13G010090	Cucurbita maxima (Rimu)	cgybcmaB073
CsGy1G006810	CmoCh13G010470	Cucurbita moschata (Rifu)	cgybcmoB067
CsGy1G006810	Lsi02G002100	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G006810	Cp4.1LG09g11320	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G006810	Cp4.1LG20g01230	Cucurbita pepo (Zucchini)	cgybcpeB069
CsGy1G006810	MELO3C002108.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G006810	CsaV3_1G006920	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G006810	Bhi08G001050	Wax gourd	cgybwgoB025

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G006810	Cucumber (Gy14) v2	cgybcgybB002
CsGy1G006810	Cucurbita maxima (Rimu)	cgybcmaB030
CsGy1G006810	Cucurbita maxima (Rimu)	cgybcmaB085
CsGy1G006810	Cucurbita moschata (Rifu)	cgybcmoB029
CsGy1G006810	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G006810	Cucurbita pepo (Zucchini)	cgybcpeB128
CsGy1G006810	Cucumber (Chinese Long) v2	cgybcuB005
CsGy1G006810	Bottle gourd (USVL1VR-Ls)	cgyblsiB069
CsGy1G006810	Melon (DHL92) v3.5.1	cgybmeB052
CsGy1G006810	Melon (DHL92) v3.6.1	cgybmedB046
CsGy1G006810	Watermelon (Charleston Gray)	cgybwcgB080
CsGy1G006810	Watermelon (97103) v1	cgybwmB096
CsGy1G006810	Wild cucumber (PI 183967)	cgybcpiB005
CsGy1G006810	Silver-seed gourd	carcgybB0393
CsGy1G006810	Silver-seed gourd	carcgybB0518
CsGy1G006810	Silver-seed gourd	carcgybB0595
CsGy1G006810	Cucumber (Chinese Long) v3	cgybcucB003
CsGy1G006810	Watermelon (97103) v2	cgybwmbB053
CsGy1G006810	Watermelon (97103) v2	cgybwmbB078