CmoCh13G010470 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G010470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr13 : 8767160 .. 8767384 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGGCTAATGAGAGAATTTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGTATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTACGGTGCCGGTTGCGCAGCCGGCTGCGGCGCTGGATGTGGTGCTTGA

mRNA sequence

ATGGCGAGGCTAATGAGAGAATTTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGTATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTACGGTGCCGGTTGCGCAGCCGGCTGCGGCGCTGGATGTGGTGCTTGA

Coding sequence (CDS)

ATGGCGAGGCTAATGAGAGAATTTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGTATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTACGGTGCCGGTTGCGCAGCCGGCTGCGGCGCTGGATGTGGTGCTTGA
Homology
[Close]
BLAST of CmoCh13G010470 vs. TrEMBL
Match: A0A0A0LQU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-25
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 1 

Query: 1  MARLMREFGSQNGSFGLAG-DIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          MARLMRE  SQNGSFGLAG + Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMS-KDRNSTVDVEL 60

Query: 61 YGAGCAAGCGAGCGA 75
          YG GCAAGCGAGCGA
Sbjct: 61 YGGGCAAGCGAGCGA 74

[Close]
BLAST of CmoCh13G010470 vs. TrEMBL
Match: M5WF59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027081mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-14
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ RE GS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K++N+  D +LY
Sbjct: 1  MVRVWREIGSVDG--GVATANWLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKLY 60

Query: 61 GAGCAAGCGAGCGA 75
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

[Close]
BLAST of CmoCh13G010470 vs. TrEMBL
Match: B9I2J4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05020g PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1 

Query: 1  MARLMREFGSQNGSFG-LAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          M R ++E  +  GS G + G   +L WA L TLC++S I+FSC++G+S KD+ S AD  L
Sbjct: 1  MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVS-KDKTSEADSTL 60

Query: 61 YGAGCAAGCGAGCG 74
          YG GCAAGCGA CG
Sbjct: 61 YGGGCAAGCGAACG 73

[Close]
BLAST of CmoCh13G010470 vs. TrEMBL
Match: A0A151TET4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_011800 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.8e-10
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R + E    + + G  G+ Y +    L T CII  IIFSC+DG+S K++ S AD E Y
Sbjct: 1  MVRELGEVKIVDANLGFFGNAYAILLVVLVTFCIIPAIIFSCADGVS-KEKTSAADQEPY 60

Query: 61 GAGCAAGCGAGCGA 75
          GAGC AGCGAGCGA
Sbjct: 61 GAGCGAGCGAGCGA 73

[Close]
BLAST of CmoCh13G010470 vs. TrEMBL
Match: A0A0L9VHE3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g031000 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.9e-10
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R +RE    + + G  G+ Y ++   L T CII  IIFSC+DG+S K+++S AD E Y
Sbjct: 1  MVRELREVKIVDANIGFYGNGYAIWLMILVTFCIIPAIIFSCADGVS-KEKSSAADEEPY 60

Query: 61 GAGCAAGCGAGCGA 75
          GA C AGCGAGCGA
Sbjct: 61 GAACGAGCGAGCGA 73

[Close]
BLAST of CmoCh13G010470 vs. TAIR10
Match: AT1G68238.1 (AT1G68238.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.5e-06
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1 

Query: 19 GDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELYGAGCAAGCGAGCG 74
          G++ L  WAA+    +I+ +IFSCSD  S    N     ++ G+ CAAGCG GCG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND----DVNGSSCAAGCGGGCG 64

[Close]
BLAST of CmoCh13G010470 vs. NCBI nr
Match: gi|700209052|gb|KGN64148.1| (hypothetical protein Csa_1G042580 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-25
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 1 

Query: 1  MARLMREFGSQNGSFGLAG-DIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          MARLMRE  SQNGSFGLAG + Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMS-KDRNSTVDVEL 60

Query: 61 YGAGCAAGCGAGCGA 75
          YG GCAAGCGAGCGA
Sbjct: 61 YGGGCAAGCGAGCGA 74

[Close]
BLAST of CmoCh13G010470 vs. NCBI nr
Match: gi|659066784|ref|XP_008461221.1| (PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-24
Identity = 62/75 (82.67%), Postives = 65/75 (86.67%), Query Frame = 1 

Query: 1   MARLMREFGSQNGSFGLAG-DIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
           MAR+MRE   QNGSFGLAG + Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 36  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMS-KDRNSTVDVEL 95

Query: 61  YGAGCAAGCGAGCGA 75
           YG GCAAGCGAGCGA
Sbjct: 96  YGGGCAAGCGAGCGA 109

[Close]
BLAST of CmoCh13G010470 vs. NCBI nr
Match: gi|595860517|ref|XP_007211155.1| (hypothetical protein PRUPE_ppa027081mg [Prunus persica])

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-14
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ RE GS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K++N+  D +LY
Sbjct: 1  MVRVWREIGSVDG--GVATANWLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKLY 60

Query: 61 GAGCAAGCGAGCGA 75
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

[Close]
BLAST of CmoCh13G010470 vs. NCBI nr
Match: gi|1009131358|ref|XP_015882794.1| (PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-13
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1 

Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M RL R+  S +GS G AG  +++ W AL  +CIIS IIFSC+DG+S K++ STAD ELY
Sbjct: 1  MVRLWRDLASVHGS-GSAG--FVVLWLALLGVCIISAIIFSCADGVS-KEKTSTADTELY 60

Query: 61 GAGCAAGCGAGCGA 75
          G GCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 70

[Close]
BLAST of CmoCh13G010470 vs. NCBI nr
Match: gi|743920082|ref|XP_011004079.1| (PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-10
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 1  MARLMRE-FGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          M R ++E      G  GL G   +  WA L TLC++S I+FSC++G+S KD+ S AD  L
Sbjct: 1  MVRPLKEVLAVDGGGGGLDGSCLVFLWAVLLTLCLLSAIVFSCAEGVS-KDKTSEADSTL 60

Query: 61 YGAGCAAGCGAGCG 74
          YG GCAAGCGA CG
Sbjct: 61 YGGGCAAGCGAACG 73

The following BLAST results are available for this feature:
BLAST of CmoCh13G010470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh13G010470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQU7_CUCSA2.2e-2585.33Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042580 PE=4 SV=1[more]
M5WF59_PRUPE1.7e-1455.41Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027081mg PE=4 SV=1[more]
B9I2J4_POPTR2.0e-1052.70Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05020g PE=4 SV=1[more]
A0A151TET4_CAJCA5.8e-1051.35Uncharacterized protein OS=Cajanus cajan GN=KK1_011800 PE=4 SV=1[more]
A0A0L9VHE3_PHAAN9.9e-1051.35Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g031000 PE=4 SV=1[more]
BLAST of CmoCh13G010470 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68238.13.5e-0643.64 unknown protein[more]
BLAST of CmoCh13G010470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209052|gb|KGN64148.1|3.1e-2585.33hypothetical protein Csa_1G042580 [Cucumis sativus][more]
gi|659066784|ref|XP_008461221.1|1.2e-2482.67PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo][more]
gi|595860517|ref|XP_007211155.1|2.5e-1455.41hypothetical protein PRUPE_ppa027081mg [Prunus persica][more]
gi|1009131358|ref|XP_015882794.1|1.6e-1362.16PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba][more]
gi|743920082|ref|XP_011004079.1|1.7e-1051.35PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G010470.1CmoCh13G010470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199FAMILY NOT NAMEDcoord: 1..74
score: 5.3
NoneNo IPR availablePANTHERPTHR37199:SF2SUBFAMILY NOT NAMEDcoord: 1..74
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh13G010470CmaCh13G010090Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G010470Cla018478Watermelon (97103) v1cmowmB194
CmoCh13G010470Csa1G042580Cucumber (Chinese Long) v2cmocuB202
CmoCh13G010470MELO3C002108Melon (DHL92) v3.5.1cmomeB180
CmoCh13G010470ClCG04G010920Watermelon (Charleston Gray)cmowcgB191
CmoCh13G010470CSPI01G06980Wild cucumber (PI 183967)cmocpiB204
CmoCh13G010470Lsi02G002100Bottle gourd (USVL1VR-Ls)cmolsiB198
CmoCh13G010470Cp4.1LG09g11320Cucurbita pepo (Zucchini)cmocpeB183
CmoCh13G010470Cp4.1LG20g01230Cucurbita pepo (Zucchini)cmocpeB201
CmoCh13G010470MELO3C002108.2Melon (DHL92) v3.6.1cmomedB202
CmoCh13G010470CsaV3_1G006920Cucumber (Chinese Long) v3cmocucB0234
CmoCh13G010470Bhi08G001050Wax gourdcmowgoB0258
CmoCh13G010470CsGy1G006810Cucumber (Gy14) v2cgybcmoB067
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G010470Silver-seed gourdcarcmoB0526
CmoCh13G010470Silver-seed gourdcarcmoB0698
CmoCh13G010470Silver-seed gourdcarcmoB0810
CmoCh13G010470Silver-seed gourdcarcmoB1065
CmoCh13G010470Cucumber (Chinese Long) v3cmocucB0238
CmoCh13G010470Watermelon (97103) v2cmowmbB216
CmoCh13G010470Watermelon (97103) v2cmowmbB222
CmoCh13G010470Cucurbita moschata (Rifu)cmocmoB055
CmoCh13G010470Cucurbita moschata (Rifu)cmocmoB089
CmoCh13G010470Cucurbita moschata (Rifu)cmocmoB171
CmoCh13G010470Cucumber (Gy14) v1cgycmoB0263
CmoCh13G010470Cucumber (Gy14) v1cgycmoB0314
CmoCh13G010470Cucurbita maxima (Rimu)cmacmoB399
CmoCh13G010470Cucurbita maxima (Rimu)cmacmoB125
CmoCh13G010470Wild cucumber (PI 183967)cmocpiB209
CmoCh13G010470Cucumber (Chinese Long) v2cmocuB207
CmoCh13G010470Melon (DHL92) v3.5.1cmomeB191
CmoCh13G010470Watermelon (Charleston Gray)cmowcgB195
CmoCh13G010470Watermelon (97103) v1cmowmB202
CmoCh13G010470Cucurbita pepo (Zucchini)cmocpeB195
CmoCh13G010470Cucurbita pepo (Zucchini)cmocpeB212
CmoCh13G010470Bottle gourd (USVL1VR-Ls)cmolsiB206
CmoCh13G010470Cucumber (Gy14) v2cgybcmoB071
CmoCh13G010470Melon (DHL92) v3.6.1cmomedB213