Cp4.1LG20g01230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g01230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG20 : 755760 .. 755984 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGGCTAATGAGAGAAATTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTATGGCGCCGGTTGCGCCGCCGGTTGCGGCGCTGGATGTGGTGCTTGA

mRNA sequence

ATGGCGAGGCTAATGAGAGAAATTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTATGGCGCCGGTTGCGCCGCCGGTTGCGGCGCTGGATGTGGTGCTTGA

Coding sequence (CDS)

ATGGCGAGGCTAATGAGAGAAATTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTATGGCGCCGGTTGCGCCGCCGGTTGCGGCGCTGGATGTGGTGCTTGA

Protein sequence

MARLMREIGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELYGAGCAAGCGAGCGA
Homology
[Close]
BLAST of Cp4.1LG20g01230 vs. TrEMBL
Match: A0A0A0LQU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.5e-26
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 1 

Query: 1  MARLMREIGSQNGSFGLAG-DIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          MARLMREI SQNGSFGLAG + Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMS-KDRNSTVDVEL 60

Query: 61 YGAGCAAGCGAGCGA 75
          YG GCAAGCGAGCGA
Sbjct: 61 YGGGCAAGCGAGCGA 74

[Close]
BLAST of Cp4.1LG20g01230 vs. TrEMBL
Match: M5WF59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027081mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.0e-15
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 1  MARLMREIGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ REIGS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K++N+  D +LY
Sbjct: 1  MVRVWREIGSVDG--GVATANWLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKLY 60

Query: 61 GAGCAAGCGAGCGA 75
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

[Close]
BLAST of Cp4.1LG20g01230 vs. TrEMBL
Match: B9I2J4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05020g PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.8e-11
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1 

Query: 1  MARLMREIGSQNGSFG-LAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          M R ++E+ +  GS G + G   +L WA L TLC++S I+FSC++G+S KD+ S AD  L
Sbjct: 1  MVRPLKEVLAVVGSGGGVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVS-KDKTSEADSTL 60

Query: 61 YGAGCAAGCGAGCG 74
          YG GCAAGCGA CG
Sbjct: 61 YGGGCAAGCGAACG 73

[Close]
BLAST of Cp4.1LG20g01230 vs. TrEMBL
Match: A0A151TET4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_011800 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 1  MARLMREIGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R + E+   + + G  G+ Y +    L T CII  IIFSC+DG+S K++ S AD E Y
Sbjct: 1  MVRELGEVKIVDANLGFFGNAYAILLVVLVTFCIIPAIIFSCADGVS-KEKTSAADQEPY 60

Query: 61 GAGCAAGCGAGCGA 75
          GAGC AGCGAGCGA
Sbjct: 61 GAGCGAGCGAGCGA 73

[Close]
BLAST of Cp4.1LG20g01230 vs. TrEMBL
Match: A0A0L9VHE3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g031000 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-10
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1 

Query: 1  MARLMREIGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R +RE+   + + G  G+ Y ++   L T CII  IIFSC+DG+S K+++S AD E Y
Sbjct: 1  MVRELREVKIVDANIGFYGNGYAIWLMILVTFCIIPAIIFSCADGVS-KEKSSAADEEPY 60

Query: 61 GAGCAAGCGAGCGA 75
          GA C AGCGAGCGA
Sbjct: 61 GAACGAGCGAGCGA 73

[Close]
BLAST of Cp4.1LG20g01230 vs. TAIR10
Match: AT1G68238.1 (AT1G68238.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.5e-06
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1 

Query: 19 GDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELYGAGCAAGCGAGCG 74
          G++ L  WAA+    +I+ +IFSCSD  S    N     ++ G+ CAAGCG GCG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND----DVNGSSCAAGCGGGCG 64

[Close]
BLAST of Cp4.1LG20g01230 vs. NCBI nr
Match: gi|700209052|gb|KGN64148.1| (hypothetical protein Csa_1G042580 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 1 

Query: 1  MARLMREIGSQNGSFGLAG-DIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          MARLMREI SQNGSFGLAG + Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMS-KDRNSTVDVEL 60

Query: 61 YGAGCAAGCGAGCGA 75
          YG GCAAGCGAGCGA
Sbjct: 61 YGGGCAAGCGAGCGA 74

[Close]
BLAST of Cp4.1LG20g01230 vs. NCBI nr
Match: gi|659066784|ref|XP_008461221.1| (PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-25
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 1 

Query: 1   MARLMREIGSQNGSFGLAG-DIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
           MAR+MREI  QNGSFGLAG + Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 36  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMS-KDRNSTVDVEL 95

Query: 61  YGAGCAAGCGAGCGA 75
           YG GCAAGCGAGCGA
Sbjct: 96  YGGGCAAGCGAGCGA 109

[Close]
BLAST of Cp4.1LG20g01230 vs. NCBI nr
Match: gi|595860517|ref|XP_007211155.1| (hypothetical protein PRUPE_ppa027081mg [Prunus persica])

HSP 1 Score: 87.8 bits (216), Expect = 8.6e-15
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 1  MARLMREIGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ REIGS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K++N+  D +LY
Sbjct: 1  MVRVWREIGSVDG--GVATANWLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKLY 60

Query: 61 GAGCAAGCGAGCGA 75
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

[Close]
BLAST of Cp4.1LG20g01230 vs. NCBI nr
Match: gi|1009131358|ref|XP_015882794.1| (PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 84.7 bits (208), Expect = 7.3e-14
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 1  MARLMREIGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M RL R++ S +GS G AG  +++ W AL  +CIIS IIFSC+DG+S K++ STAD ELY
Sbjct: 1  MVRLWRDLASVHGS-GSAG--FVVLWLALLGVCIISAIIFSCADGVS-KEKTSTADTELY 60

Query: 61 GAGCAAGCGAGCGA 75
          G GCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 70

[Close]
BLAST of Cp4.1LG20g01230 vs. NCBI nr
Match: gi|743920082|ref|XP_011004079.1| (PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica])

HSP 1 Score: 74.7 bits (182), Expect = 7.5e-11
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 1  MARLMREI-GSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          M R ++E+     G  GL G   +  WA L TLC++S I+FSC++G+S KD+ S AD  L
Sbjct: 1  MVRPLKEVLAVDGGGGGLDGSCLVFLWAVLLTLCLLSAIVFSCAEGVS-KDKTSEADSTL 60

Query: 61 YGAGCAAGCGAGCG 74
          YG GCAAGCGA CG
Sbjct: 61 YGGGCAAGCGAACG 73

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g01230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g01230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQU7_CUCSA7.5e-2686.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042580 PE=4 SV=1[more]
M5WF59_PRUPE6.0e-1556.76Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027081mg PE=4 SV=1[more]
B9I2J4_POPTR6.8e-1152.70Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05020g PE=4 SV=1[more]
A0A151TET4_CAJCA2.0e-1051.35Uncharacterized protein OS=Cajanus cajan GN=KK1_011800 PE=4 SV=1[more]
A0A0L9VHE3_PHAAN3.4e-1051.35Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g031000 PE=4 SV=1[more]
BLAST of Cp4.1LG20g01230 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68238.13.5e-0643.64 unknown protein[more]
BLAST of Cp4.1LG20g01230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209052|gb|KGN64148.1|1.1e-2586.67hypothetical protein Csa_1G042580 [Cucumis sativus][more]
gi|659066784|ref|XP_008461221.1|4.1e-2584.00PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo][more]
gi|595860517|ref|XP_007211155.1|8.6e-1556.76hypothetical protein PRUPE_ppa027081mg [Prunus persica][more]
gi|1009131358|ref|XP_015882794.1|7.3e-1462.16PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba][more]
gi|743920082|ref|XP_011004079.1|7.5e-1151.35PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g01230.1Cp4.1LG20g01230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199FAMILY NOT NAMEDcoord: 1..74
score: 5.3
NoneNo IPR availablePANTHERPTHR37199:SF2SUBFAMILY NOT NAMEDcoord: 1..74
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g01230CmaCh13G010090Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g01230CmoCh13G010470Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g01230Cla018478Watermelon (97103) v1cpewmB523
Cp4.1LG20g01230Csa1G042580Cucumber (Chinese Long) v2cpecuB505
Cp4.1LG20g01230MELO3C002108Melon (DHL92) v3.5.1cpemeB478
Cp4.1LG20g01230ClCG04G010920Watermelon (Charleston Gray)cpewcgB471
Cp4.1LG20g01230CSPI01G06980Wild cucumber (PI 183967)cpecpiB505
Cp4.1LG20g01230Lsi02G002100Bottle gourd (USVL1VR-Ls)cpelsiB418
Cp4.1LG20g01230MELO3C002108.2Melon (DHL92) v3.6.1cpemedB560
Cp4.1LG20g01230CsaV3_1G006920Cucumber (Chinese Long) v3cpecucB0623
Cp4.1LG20g01230Bhi08G001050Wax gourdcpewgoB0635
Cp4.1LG20g01230CsGy1G006810Cucumber (Gy14) v2cgybcpeB069
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g01230Cp4.1LG09g11320Cucurbita pepo (Zucchini)cpecpeB049
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g01230Cucurbita pepo (Zucchini)cpecpeB352
Cp4.1LG20g01230Cucurbita pepo (Zucchini)cpecpeB442
Cp4.1LG20g01230Cucumber (Gy14) v1cgycpeB0258
Cp4.1LG20g01230Cucumber (Gy14) v1cgycpeB0308
Cp4.1LG20g01230Cucurbita maxima (Rimu)cmacpeB139
Cp4.1LG20g01230Cucurbita maxima (Rimu)cmacpeB439
Cp4.1LG20g01230Cucurbita moschata (Rifu)cmocpeB116
Cp4.1LG20g01230Cucurbita moschata (Rifu)cmocpeB404
Cp4.1LG20g01230Wild cucumber (PI 183967)cpecpiB509
Cp4.1LG20g01230Cucumber (Chinese Long) v2cpecuB509
Cp4.1LG20g01230Bottle gourd (USVL1VR-Ls)cpelsiB432
Cp4.1LG20g01230Watermelon (Charleston Gray)cpewcgB475
Cp4.1LG20g01230Watermelon (97103) v1cpewmB529
Cp4.1LG20g01230Melon (DHL92) v3.5.1cpemeB483
Cp4.1LG20g01230Cucumber (Gy14) v2cgybcpeB073
Cp4.1LG20g01230Melon (DHL92) v3.6.1cpemedB568
Cp4.1LG20g01230Silver-seed gourdcarcpeB0544
Cp4.1LG20g01230Silver-seed gourdcarcpeB0725
Cp4.1LG20g01230Silver-seed gourdcarcpeB0846
Cp4.1LG20g01230Silver-seed gourdcarcpeB1104
Cp4.1LG20g01230Cucumber (Chinese Long) v3cpecucB0627