Lsi09G018280 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G018280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	15 kDa selenoprotein
Location	chr09 : 27113586 .. 27117962 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAACATATTTCTAAAAACGGAATATAATTATTATTTAAAATAAAACTAGAAAATTGACGCAATAGGTCAAAATAACGAAAAATGTTATTTCTCCAAATTTGAAGTTAAAAATTGGTCTTTTCCAGTGAGAGTTTTCTGATCGTCTGTAGACTTTGCGTCTTCACCCTCAGTCGCCGGCGAACACAGAGATGCAGCTTCTCCCCGGGGTAAGGAATCCCGCTACGGCGGTGACGATAACGTTAGCGGCGACGGCGATCATTTTCATCGCGTCAATGCCATTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGGTGATGCGTTTAATTCAATGGTTCTTTTTACACTAATTCTTGATCCGGTTTTGAATTTATATCTTTATTATTGCATTTCTTCCGTTTTCGTGGCTATTTCTCGTGAATTAACAGCATCGTAATGGATTTTGTTCGCTTGTTTTATTGATTCTCTCCGTTCTTTTGAACGATTGTTTGTCTGTCTTGTGGTTGGTTTTGTTTATGTATGTTTTTTGCTTGATTTGGATTTTGGATTTCCGGATTACTTTGTTGTAGTCTGATGTGTAAAGTGTTGGTTTTAATTTCGATATCTTCAATCAATTTCTTAGTATTGTGGATAGAGTTTGCTTATGTTAGTTCTCATTTTCTTCAGAGATACGGTAAGTGATGAGTTCAGAGACAGACTTAAGGTCCTACTTCTTTGATTGTGTGGGAATTTGTTTGGGAAGATGGTTCCCGAAATTCTGATGTAATAACTCTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAACTATTTTGAGAACCAATTTTTTGTATTTTTGAAATAATGCTTTGTGAAAACATCTTCAACTGTTTTTATAAAGTTGTACACTTGTTTTTTTTTTAGTTTTGTTTTCACATACATCTATTTCTTTTAGATAAAATGAAGATATTCTTTCTTGTGAAAATGAATTTCAAGTGCATTACGTGTCATCTGATCACAACTCTCAAAGAATAGGAGTCTGCTTTTCAAGACTGTCTCCAACGGCCATGTTTGCTAAATGTGAAAATGCTTATACAGTCGGTTAGAGAAGTCATTTTCCACGCATTAGACTGATACTGTTAATTGAACATTACTCTAGTAAAGGCACTTTCTAAAATCATACATGCTCCCCGCCTCTTTTAGCAGTCACCTGGTCTTTTTAAAATAGCACCTGCACTTTTTGGAAGAAATAAGAAAATGCTAAGGCAGTTGACTTGGCTGGAGGAGATCTCCCCCTCTCCCCCGGGGTTCCATTACCTTCATCTGTTTATGCAACTGCTTTTGGAAACAAGAAATAGGTTGGAAATGTTGAGTTAAGATAACATATTGCCTTTAAGTATCATAGTTTAAGAATTTGTAAGTTTACAAATGAGTTTTATGGAAACATTTCAAAAGATGTAATTCCAAATGAAGAATTCAGTGATTGTTCCACTGGAAATTCTAACAACACTGGATTTATGAAGGATTGATAATGACTTCAAATAGTTTTTATCCAAAAGGAGAAAAGAATTGATGGTATGCAAGATCTGCAACCGTTTTGTGTTAGCTTTCTGTAATAATTTTGAAGTGCATTGTTTTTAATATTACACACTATCCTCATGCCCATATCTGTACTGCAGAATTAGTGACGGACTGTTTGAAGTGTTGCTCGGAGGATTCTGATGATGCCACGAGTAAGGTACACAAAATTTCATAAATGTGCTGATTTCTTCAAGGGGAATCAATGAAATCTTGTTTCTCCCCCAAAAATTTCATTAACTGACCGTTCCATTTGTGATTAATGTATCACACTTCTAAACTGAATGCTTGTACATTCCTGTGGTGGATTTGTCAATGTAAAACACATTAGTTCAACAGATGTAATTATCACAACTATGGTCCAAAACAAGGTTTCAGTAAACAAGGGAAACTAACTCATCTTTAGAAAAAGGGGATTCAAGGGATGTGCAATGCAGTTATCAATGCATATCACAACCCTGTTGAAAGCGGGGGGGTTAGAAATAGTTGGTTCATCGCTGAGCTAGTGTAACCTATTAATTCACATTATTTTGTAAATCACCAGAGGTACATATCCATAGTATTTTACTATTCTTTTATCGGTGTTCCAAACTTCTGGACAGATTTGCTGCACTCGATATGAGGCAATTACTTATTCCAAGAGCCCAGTAGTTTCCCTTTTCCATTTAGCCCTATACCCCTCCATGGTGTTACAGGGACAACTGCTCTATGATGGAGATCCTGATGAACTCCCATTGTAACTATTAGTTTGTTCTCATTCTTTTTTTATTGGTGTCTATTTTGTAGGTTGTTAAGGACTCCTTTTGGGAGCTTGATTTTTGTATGCCCCAATATATTCTTTCATTTATATTCATGAAAGCTTGGTTTTCAAAAAAAACCATTAAAAGTCCAAGAAACGTTCTTGAAAATTCTACTATTGAGCTCACACCAAAGATTCCAGAAAAAAATCTTGGTTGATGGCCAGCCATAAAGTCTTCTTAAAACCAAGAAAAGTATGTCTCACAAAAACCAAAGCCAATATGTCATAAATAGTTCCGATATACATCCAGAATTTAGAGCCTCTCCAAGCGATTGAGTTTTGAGTTCCACCCTCACCTAAATTCATTACTCTGTTGATTGTATTTCATAACTAACTGCATTTGTGTCTTTTCATTTCATTTTTCATTTTGACTAAAGATGAAAGCCAATTAACTAAGTTCCCTGACTGCAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCCTCAGTTAAGGTTCAATATATCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATCAGGTAACTTCTACGTCTCCAATTTACTTGTTATAATAATGTCTACAAGAATGCTTGCATCTGTAACTTAGTCAGAGTACATATAATTAATCTTAGGGGGTGTTTGGGTGCTGAGTTAAGTTTTGAAGTTTGAAGTTAATATGTTGAAGTTAGAAGTCTATGTTTGGAGTGTAGAGTTACGAAAATGGAGTTCTTCGATAAATATGCAAAAGAAAGATAGGAAGATGGAGTTCCTCGCTTAATGTGCAAACTTTAATTGCAAATACTATTGAAGTTGGTGGAGTCAAGTTATTTAATACCAACTTATGAAGTTGGTGGGCCAAACACCCACTTAGAACAAAATAGTGAATGAAGAATATGTTTGAGGAGGTTAAAATGATGTATATAGCGATATTGATTTTGCATTAGCTTAATGGGTAATGACCATTGTTCATTGATGATAGTATCGATATAAAAAATGTTTGATATTTTATATTTTAAATTTTTGCAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAAGGTTCTCACTAGTCGTCCCCCCCCCCCCCCC

mRNA sequence

CGAACATATTTCTAAAAACGGAATATAATTATTATTTAAAATAAAACTAGAAAATTGACGCAATAGGTCAAAATAACGAAAAATGTTATTTCTCCAAATTTGAAGTTAAAAATTGGTCTTTTCCAGTGAGAGTTTTCTGATCGTCTGTAGACTTTGCGTCTTCACCCTCAGTCGCCGGCGAACACAGAGATGCAGCTTCTCCCCGGGGTAAGGAATCCCGCTACGGCGGTGACGATAACGTTAGCGGCGACGGCGATCATTTTCATCGCGTCAATGCCATTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGACGGACTGTTTGAAGTGTTGCTCGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCCTCAGTTAAGGTTCAATATATCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATCAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAAGGTTCTCACTAGTCGTCCCCCCCCCCCCCCC

Coding sequence (CDS)

ATGCAGCTTCTCCCCGGGGTAAGGAATCCCGCTACGGCGGTGACGATAACGTTAGCGGCGACGGCGATCATTTTCATCGCGTCAATGCCATTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGACGGACTGTTTGAAGTGTTGCTCGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCCTCAGTTAAGGTTCAATATATCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATCAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

Protein sequence

MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI

Homology

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BLAST of Lsi09G018280 vs. Swiss-Prot
Match: SEP15_BOVIN (15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-19
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 1


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLE 96
           + SS  C +LGF+   LCS C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 97  VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 157 HILQFLQEKVKR 168
            + +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

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BLAST of Lsi09G018280 vs. Swiss-Prot
Match: SEP15_HUMAN (15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3)

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-19
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 1


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLE 96
           + SS  C +LGF+   LCS C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSEACRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 97  VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 157 HILQFLQEKVKR 168
            + +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

[Close]

BLAST of Lsi09G018280 vs. Swiss-Prot
Match: SEP15_DANRE (15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 4.6e-19
Identity = 50/132 (37.88%), Postives = 77/132 (58.33%), Query Frame = 1


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLE 96
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 97  VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 157 HILQFLQEKVKR 168
            + +FL EK++R
Sbjct: 143 SVEEFLSEKLER 152

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BLAST of Lsi09G018280 vs. Swiss-Prot
Match: SEP15_PIG (15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 57/163 (34.97%), Postives = 89/163 (54.60%), Query Frame = 1


Query: 6   GVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIK 65
           G   PA  + + LA TA+  +++        + SS  C +LGF+   LC  C  L ++  
Sbjct: 7   GWLGPALGLRLLLA-TALQMVSAFGA-----EFSSESCRELGFSSNLLCGSCDLLGQFDL 66

Query: 66  DQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDK-FPSVKV 125
            Q L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K K F  +++
Sbjct: 67  LQ-LDPDCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQI 126

Query: 126 QYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKR 168
           +Y+  S P L LLDD G   E + I  W  + + +FL EK++R
Sbjct: 127 KYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLQR 161

[Close]

BLAST of Lsi09G018280 vs. Swiss-Prot
Match: SEP15_RAT (15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3)

HSP 1 Score: 92.0 bits (227), Expect = 6.6e-18
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLE 96
           + SS  C +LGF+   LCS C  L ++     L   C  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEEAQFETKKL-YAGAILE 91

Query: 97  VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 157 HILQFLQEKVKR 168
            + +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

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BLAST of Lsi09G018280 vs. TrEMBL
Match: A0A0A0KA30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087180 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 1.8e-83
Identity = 154/171 (90.06%), Postives = 163/171 (95.32%), Query Frame = 1


Query: 1   MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGV N A AVT+ L ATAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQELV+DCLKCC+EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE++KD+FP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVKVQY FNSPPKLILLDD+GQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of Lsi09G018280 vs. TrEMBL
Match: B9IQU6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12540g PE=4 SV=2)

HSP 1 Score: 264.6 bits (675), Expect = 8.2e-68
Identity = 123/149 (82.55%), Postives = 141/149 (94.63%), Query Frame = 1


Query: 23  IIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSD 82
           + F   +P+  SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELV+DCLKCC+EDSD
Sbjct: 11  LFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 83  DATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQ 142
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIEEEKD+FP+VKVQY+FNSPPKLI+LDDEGQ
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGQ 130

Query: 143 HKESIRIDNWKREHILQFLQEKVKRSSAI 172
           HKE+IRIDNWKREH+LQFLQEKVK +SAI
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPASAI 159

[Close]

BLAST of Lsi09G018280 vs. TrEMBL
Match: A0A067LJ32_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.1e-67
Identity = 120/142 (84.51%), Postives = 138/142 (97.18%), Query Frame = 1


Query: 29  MPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKI 88
           +P+A SKEQLSSRECEDLGFTGLALCSDC+T AEY+K+QELV+DCLKCC+EDSDD+ SKI
Sbjct: 17  LPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLKCCTEDSDDSLSKI 76

Query: 89  TYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIR 148
           TYSGA+LEVCMRKLVFYPEIVGFIEEEKD+FP+VKVQY+FNSPPKLILLDDEGQHKE++R
Sbjct: 77  TYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLILLDDEGQHKETVR 136

Query: 149 IDNWKREHILQFLQEKVKRSSA 171
           IDNWKREH+LQFL+EKVK +S+
Sbjct: 137 IDNWKREHLLQFLREKVKHASS 158

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BLAST of Lsi09G018280 vs. TrEMBL
Match: M5Y5K8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012718mg PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 5.9e-66
Identity = 123/154 (79.87%), Postives = 140/154 (90.91%), Query Frame = 1


Query: 18  LAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCC 77
           L A  ++    +PL  SKEQLS+RECE+LGFTGLALCSDC++LAEY+KDQELV+DC KCC
Sbjct: 4   LIAMLVVLGVVVPLGASKEQLSTRECENLGFTGLALCSDCNSLAEYVKDQELVSDCRKCC 63

Query: 78  SEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILL 137
           +EDSDD+ SK+TYSGA+LEVCMRKLVFYPEIVGFIEEEKD+FPSVKVQYIFNSPPKLILL
Sbjct: 64  TEDSDDSISKVTYSGAILEVCMRKLVFYPEIVGFIEEEKDRFPSVKVQYIFNSPPKLILL 123

Query: 138 DDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           DD  +HKE+IRIDNWKREHILQFLQ KVKR+SAI
Sbjct: 124 DDADEHKETIRIDNWKREHILQFLQGKVKRASAI 157

[Close]

BLAST of Lsi09G018280 vs. TrEMBL
Match: V4U1J4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022516mg PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 7.7e-66
Identity = 122/151 (80.79%), Postives = 136/151 (90.07%), Query Frame = 1


Query: 20  ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSE 79
           A   I I S     SKEQLS+RECEDLGFTGLALCSDC+T AEY+KDQELV DCLKCC+E
Sbjct: 9   AVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTE 68

Query: 80  DSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDD 139
           DSDD+ SKITYSGA+LE CMRKLVFYPEIVGFIEEEKDKFP+V+VQY+FNSPPKLI+LD+
Sbjct: 69  DSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDE 128

Query: 140 EGQHKESIRIDNWKREHILQFLQEKVKRSSA 171
           EGQHKE+IRIDNWKREH+LQFLQEKVK +SA
Sbjct: 129 EGQHKETIRIDNWKREHMLQFLQEKVKPTSA 159

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BLAST of Lsi09G018280 vs. TAIR10
Match: AT1G05720.1 (AT1G05720.1 selenoprotein family protein)

HSP 1 Score: 250.8 bits (639), Expect = 6.2e-67
Identity = 117/158 (74.05%), Postives = 145/158 (91.77%), Query Frame = 1


Query: 13  AVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTD 72
           A  + L+A  I+ +AS   A  KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELV+D
Sbjct: 7   AKMVVLSAMMILILASTISA--KEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSD 66

Query: 73  CLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPP 132
           CLKCC++DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIEEEK+KFPSVKVQYIFNSPP
Sbjct: 67  CLKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPP 126

Query: 133 KLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSA 171
           KLI+LD++G+HKESIRIDNWKREH+LQ+++EKVK ++A
Sbjct: 127 KLIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAA 162

[Close]

BLAST of Lsi09G018280 vs. NCBI nr
Match: gi|659120099|ref|XP_008460012.1| (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 1.5e-86
Identity = 160/171 (93.57%), Postives = 166/171 (97.08%), Query Frame = 1


Query: 1   MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGV NPATAVT+TLAA AIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQELV DCLKCC+EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEE+KD+FP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVKVQY FNSPPKLILLDDEGQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of Lsi09G018280 vs. NCBI nr
Match: gi|449445674|ref|XP_004140597.1| (PREDICTED: 15 kDa selenoprotein [Cucumis sativus])

HSP 1 Score: 316.6 bits (810), Expect = 2.6e-83
Identity = 154/171 (90.06%), Postives = 163/171 (95.32%), Query Frame = 1


Query: 1   MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGV N A AVT+ L ATAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQELV+DCLKCC+EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE++KD+FP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVKVQY FNSPPKLILLDD+GQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of Lsi09G018280 vs. NCBI nr
Match: gi|743917732|ref|XP_011002858.1| (PREDICTED: 15 kDa selenoprotein-like [Populus euphratica])

HSP 1 Score: 264.6 bits (675), Expect = 1.2e-67
Identity = 123/149 (82.55%), Postives = 142/149 (95.30%), Query Frame = 1


Query: 23  IIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSD 82
           + F   +P+A SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELV+DCLKCC+EDSD
Sbjct: 11  LFFAFLLPIAKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 83  DATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQ 142
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIEEEKD+FP+VKVQY+FNSPPKLI+LDDEG+
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGR 130

Query: 143 HKESIRIDNWKREHILQFLQEKVKRSSAI 172
           HKE+IRIDNWKREH+LQFLQEKVK +SAI
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPTSAI 159

[Close]

BLAST of Lsi09G018280 vs. NCBI nr
Match: gi|566242499|ref|XP_002326051.2| (hypothetical protein POPTR_0019s12540g [Populus trichocarpa])

HSP 1 Score: 264.6 bits (675), Expect = 1.2e-67
Identity = 123/149 (82.55%), Postives = 141/149 (94.63%), Query Frame = 1


Query: 23  IIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSD 82
           + F   +P+  SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELV+DCLKCC+EDSD
Sbjct: 11  LFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 83  DATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQ 142
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIEEEKD+FP+VKVQY+FNSPPKLI+LDDEGQ
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGQ 130

Query: 143 HKESIRIDNWKREHILQFLQEKVKRSSAI 172
           HKE+IRIDNWKREH+LQFLQEKVK +SAI
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPASAI 159

[Close]

BLAST of Lsi09G018280 vs. NCBI nr
Match: gi|802554732|ref|XP_012065054.1| (PREDICTED: 15 kDa selenoprotein [Jatropha curcas])

HSP 1 Score: 262.7 bits (670), Expect = 4.5e-67
Identity = 120/142 (84.51%), Postives = 138/142 (97.18%), Query Frame = 1


Query: 29  MPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKI 88
           +P+A SKEQLSSRECEDLGFTGLALCSDC+T AEY+K+QELV+DCLKCC+EDSDD+ SKI
Sbjct: 17  LPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLKCCTEDSDDSLSKI 76

Query: 89  TYSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIR 148
           TYSGA+LEVCMRKLVFYPEIVGFIEEEKD+FP+VKVQY+FNSPPKLILLDDEGQHKE++R
Sbjct: 77  TYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLILLDDEGQHKETVR 136

Query: 149 IDNWKREHILQFLQEKVKRSSA 171
           IDNWKREH+LQFL+EKVK +S+
Sbjct: 137 IDNWKREHLLQFLREKVKHASS 158

The following BLAST results are available for this feature:

BLAST of Lsi09G018280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SEP15_BOVIN	1.6e-19	38.64	15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2	[more]
SEP15_HUMAN	2.7e-19	38.64	15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3	[more]
SEP15_DANRE	4.6e-19	37.88	15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2	[more]
SEP15_PIG	1.3e-18	34.97	15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2	[more]
SEP15_RAT	6.6e-18	37.12	15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3	[more]

BLAST of Lsi09G018280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA30_CUCSA	1.8e-83	90.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087180 PE=4 SV=1	[more]
B9IQU6_POPTR	8.2e-68	82.55	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12540g PE=4 SV=2	[more]
A0A067LJ32_JATCU	3.1e-67	84.51	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1	[more]
M5Y5K8_PRUPE	5.9e-66	79.87	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012718mg PE=4 SV=1	[more]
V4U1J4_9ROSI	7.7e-66	80.79	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022516mg PE=4 SV=1	[more]

BLAST of Lsi09G018280 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05720.1	6.2e-67	74.05	selenoprotein family protein	[more]

BLAST of Lsi09G018280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120099\|ref\|XP_008460012.1\|	1.5e-86	93.57	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]
gi\|449445674\|ref\|XP_004140597.1\|	2.6e-83	90.06	PREDICTED: 15 kDa selenoprotein [Cucumis sativus]	[more]
gi\|743917732\|ref\|XP_011002858.1\|	1.2e-67	82.55	PREDICTED: 15 kDa selenoprotein-like [Populus euphratica]	[more]
gi\|566242499\|ref\|XP_002326051.2\|	1.2e-67	82.55	hypothetical protein POPTR_0019s12540g [Populus trichocarpa]	[more]
gi\|802554732\|ref\|XP_012065054.1\|	4.5e-67	84.51	PREDICTED: 15 kDa selenoprotein [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014912	Sep15_SelM
IPR012336	Thioredoxin-like_fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G018280.1	Lsi09G018280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 76..167 score: 5.37
IPR014912	Sep15/SelM redox	PFAM	PF08806	Sep15_SelM	coord: 93..165 score: 2.2
None	No IPR available	PANTHER	PTHR13077	FAMILY NOT NAMED	coord: 11..171 score: 6.9
None	No IPR available	PANTHER	PTHR13077:SF6	15 KDA SELENOPROTEIN	coord: 11..171 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G018280	Csa6G087180	Cucumber (Chinese Long) v2	culsiB402
Lsi09G018280	CSPI06G06700	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G018280	Cucsa.348570	Cucumber (Gy14) v1	cgylsiB562
Lsi09G018280	CmaCh17G006180	Cucurbita maxima (Rimu)	cmalsiB335
Lsi09G018280	CmaCh08G001850	Cucurbita maxima (Rimu)	cmalsiB815
Lsi09G018280	CmoCh17G006020	Cucurbita moschata (Rifu)	cmolsiB324
Lsi09G018280	CmoCh08G001900	Cucurbita moschata (Rifu)	cmolsiB801
Lsi09G018280	Cla007034	Watermelon (97103) v1	lsiwmB041
Lsi09G018280	MELO3C022425	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G018280	ClCG06G001100	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G018280	MELO3C022425.2	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G018280	Cla97C06G110370	Watermelon (97103) v2	lsiwmbB026
Lsi09G018280	Bhi12G002190	Wax gourd	lsiwgoB013
Lsi09G018280	Cp4.1LG17g10790	Cucurbita pepo (Zucchini)	cpelsiB253
Lsi09G018280	CsGy6G006710	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G018280	Carg05014	Silver-seed gourd	carlsiB071
Lsi09G018280	Carg18916	Silver-seed gourd	carlsiB703
Lsi09G018280	CsaV3_6G007030	Cucumber (Chinese Long) v3	cuclsiB424

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None