Cp4.1LG17g10790 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g10790
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptionselenoprotein family protein
LocationCp4.1LG17 : 8194948 .. 8197842 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTATTCACCGATGTAAAGAGGCCCGCTACGGTGGTGGGAATGGCGGCATGGGCGGCGGCGATAATATTCATTGCGTCGATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGAGAATGTGAGGATCTAGGTTTCACTGGCCTCGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGGTGATGCGCTCGATTCACAGATCACACGGTTTTCCGAACGCATGATTGATTCGGTTTTGAATTTATTTCTGGATTACTACATCTCCATTTTTCGTGGATTTTATCGTGAATTCGCAGCAGCGTAATGGATTTTGTTCGTTTGTTTTCTCAATTCTCCGCGTTTCTTTTTCTTTTGAACGATTGATTGTTCGCCTTGTGGTTGATTTCGATTATGGATTTCTATTGCTTGATTTGGATTTTGGAAACAGGAAATAGGTTGCAAGATGTTGAGTTAAAATAGCCTGTTGCCTTTTAGCATCATAGTTAAACAACGTGCGAGTTTATAATTGAGTTATGCAGAAAAATTTGAAAAAATGTTATAATACCAAATGACAATTCTGGCAACACTGGATTTGTGAAGGCTACATTATGAGTTCCAATAGTCTTTATCCAAAATCCAAATGAAGAAAATAACTGATAGTACTCTGAATCTGCAGTTGTCTCGTGTCAGTTTATGTAATGCAATAGTTTTGAAGTGCATTGTTCTTAAAATTACATGCTGTACTCATTTCCAAAGTTGTTCTGCAGAATTAGTGGCAGACTGTTTGAAGTGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGGTACACAAAATTTTATAGATGTGCTGATATCTCGAGTGTAAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAGTCTCTCCCTAGCAGACGCGTTTAAAAACTTTGAGGGGAATCCTGAAAGGGAAAGCCCAAAGAGGACAGTATCTACTAGAGGTGGGCTTAGATTGTTACGTCGAGACTGAATTTGATTTGCTATTCCATTGTGAATAGTGTATTGTCCATGTGGTCGACATATCGGTTGAAAACACATTAATTTAACATAGTATGCAGGATTAACAATTTTTGCCTCCATGAAATTATAAAAATTGTGGTTCTAAATAAGGTTTCAGTAAACAATATCTACTAGAGGTGTACGAGAGGTGTCATAGTGATCAATTCTAAAGGAATTAGACGACTCTATGTAACAACTCAAACCCACCTCTAGCAGATATTGTCCTTTTTGGGCTTTCTCTTTCGGGCTTCCCTTCAAGGTTTTTAAAACGTGTCTGCTAGGGAGAGGTTTCCACACCCTTAAAAAGAATATTTCATTTCTCTCTCCAACCGATGTGGGATCTCACAATCCCCCCCTTCAGGGACCAGCATCCTCGCTGGTACTTGTTCCCCTCTTCTATTGATGTGCGACCCCCCAATATCAACTAGCGGTGGGTTTGGACTGTTACACTCTATTTGGTCAAATACCTTGCAACATACTCCCACTTTTTTCGATTACAGTATCTCAAAACAAATTTCTGGTTCCAAAATTTTTGTCCACCATGGTTGCTGTTTAACTAAACAAAGGATGAAAGCCAATTAACTAAATTCGTTAACTGCAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCTGTTAAGATTCAATATATCTTCAACTCTCCGCCGAAGCTGACTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGTAACTTCTAAGTGCCTAAAATTTTCCACTATAATACTTATGGAGAGACCCTGTTAAGGTCGTGAATGTTGATGTTTCTTTCTTATGAGAATCAAACTTGTAATAAGGTACAAAAGAATACAAAAGAAATGCTTAAACAAAAAAGCGAAACTAGAGATTGAAAGAAGAGCTCTAATCATTAAGAATAAGAGATAAGAAATGGTTACAAATACATTTGGAGTTAGATAGACCCTCGAAGAGGGAGATTAAATCTAGCCAAAAGTCGCATCTCCCTACAAGATGTTCCACTTTATGCCCCTAAAACTCTCTAATTTCTGTTGTAAATGTTGATGTTTGCCCTACTAAACGACTTGTTATCTCGTCTAGAAGAACGCTTGCAAGCATCCATAACATAGAGTTCATATGATATCTTTTAGATCAAAATCATGGAGAATATGTGTAGGTTAAGATGGTGTACATAGATATAAATTTTGCTTTAGCTTCTGGTTAATGACCATTTATAATTGATATGTCACAAAAGATGACATAAGAAGTTTTTTTTCTTTTTACGTTTTTTTCCCCTTTTTTTCAGGATTGATAACTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGATAAGGTTAAGCTATCTTCAGCAATTTAAGGTTCTCATCTTCCTTGTTTCTTTAATATCCCTGTAAAAAACTCTAAAGTCTATTGTTATATTGTAGTTTTCTTTGATACTGCAATATGTTAGTATCTTATGTTTTGTGTTTTGGTAAATTTTATGTTTAATTTCACAAACTCTTTCAAGCACTTTGAACTTCAAAATGAAGAAGGAAAAGAAAAGGGAAAAATGACAATAATGTTTGAGAATTCGAATGAACTGATATCCAAATAGATGTGTTGAATTGTACAAACACAACACGCTCTAGAAGTATACAAAGATAAACAGCAACTCTACCGAGTTAAAGGCTTTGAGTGCTTCTTCAAAAAAATGTTGAGCCACTCTAGGAGGTCTATTCTTATGTACATTTGGCTCAACTCAATGAATATTGATAGAATGTTTGA

mRNA sequence

ATGCAGGTATTCACCGATGTAAAGAGGCCCGCTACGGTGGTGGGAATGGCGGCATGGGCGGCGGCGATAATATTCATTGCGTCGATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGAGAATGTGAGGATCTAGGTTTCACTGGCCTCGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGGTGATGCGCTCGATTCACAGATCACACGGTTTTCCGAACGCATGATTGATTCGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCTGTTAAGATTCAATATATCTTCAACTCTCCGCCGAAGCTGACTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGATTGATAACTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGATAAGAATGTTTGA

Coding sequence (CDS)

ATGCAGGTATTCACCGATGTAAAGAGGCCCGCTACGGTGGTGGGAATGGCGGCATGGGCGGCGGCGATAATATTCATTGCGTCGATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGAGAATGTGAGGATCTAGGTTTCACTGGCCTCGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGGTGATGCGCTCGATTCACAGATCACACGGTTTTCCGAACGCATGATTGATTCGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCTGTTAAGATTCAATATATCTTCAACTCTCCGCCGAAGCTGACTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGATTGATAACTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGATAAGAATGTTTGA

Protein sequence

MQVFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQITRFSERMIDSITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKNV
Homology
[Close]
BLAST of Cp4.1LG17g10790 vs. Swiss-Prot
Match: SEP15_DANRE (15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 9.1e-17
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 1 

Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQITRFSERMIDSITYSGAVLEVC 96
           +LSS  C +LGF+   LCS C  L ++  +Q D    Q  +   ++ +   Y GA+LEVC
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQLDLPCRQCCQEEAQLENRKLYPGAILEVC 82

Query: 97  MRKLVFYPEIVGFIEEEKDK-FPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHI 156
             KL  +P++  F+  +K K F  ++I+Y+  S P L LLDD G   E + I  W  + +
Sbjct: 83  GXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSV 142

Query: 157 LQFLQDK 163
            +FL +K
Sbjct: 143 EEFLSEK 149

[Close]
BLAST of Cp4.1LG17g10790 vs. Swiss-Prot
Match: SEP15_BOVIN (15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 43/127 (33.86%), Postives = 66/127 (51.97%), Query Frame = 1 

Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQITRFSERMIDSITYSGAVLEVC 96
           + SS  C +LGF+   LCS C  L ++   Q D       +   +      Y+GA+LEVC
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVC 91

Query: 97  MRKLVFYPEIVGFIEEEKDK-FPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHI 156
             KL  +P++  F+  +K K F  ++I+Y+  S P L LLDD G   E + I  W  + +
Sbjct: 92  GXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTDSV 151

Query: 157 LQFLQDK 163
            +FL +K
Sbjct: 152 EEFLSEK 158

[Close]
BLAST of Cp4.1LG17g10790 vs. Swiss-Prot
Match: SEP15_HUMAN (15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-14
Identity = 43/127 (33.86%), Postives = 66/127 (51.97%), Query Frame = 1 

Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQITRFSERMIDSITYSGAVLEVC 96
           + SS  C +LGF+   LCS C  L ++   Q D       +   +      Y+GA+LEVC
Sbjct: 32  EFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVC 91

Query: 97  MRKLVFYPEIVGFIEEEKDK-FPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHI 156
             KL  +P++  F+  +K K F  ++I+Y+  S P L LLDD G   E + I  W  + +
Sbjct: 92  GXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSV 151

Query: 157 LQFLQDK 163
            +FL +K
Sbjct: 152 EEFLSEK 158

[Close]
BLAST of Cp4.1LG17g10790 vs. Swiss-Prot
Match: SEP15_RAT (15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3)

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-14
Identity = 42/127 (33.07%), Postives = 66/127 (51.97%), Query Frame = 1 

Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQITRFSERMIDSITYSGAVLEVC 96
           + SS  C +LGF+   LCS C  L ++     D +     +   +      Y+GA+LEVC
Sbjct: 32  EFSSEACRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQEEAQFETKKLYAGAILEVC 91

Query: 97  MRKLVFYPEIVGFIEEEKDK-FPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHI 156
             KL  +P++  F+  +K K F  ++I+Y+  S P L LLDD G   E + I  W  + +
Sbjct: 92  GXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSV 151

Query: 157 LQFLQDK 163
            +FL +K
Sbjct: 152 EEFLSEK 158

[Close]
BLAST of Cp4.1LG17g10790 vs. Swiss-Prot
Match: SEP15_PIG (15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 1 

Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQITRFSERMIDSITYSGAVLEVC 96
           + SS  C +LGF+   LC  C  L ++   Q D       +   +      Y+GA+LEVC
Sbjct: 32  EFSSESCRELGFSSNLLCGSCDLLGQFDLLQLDPDCRGCCQEEAQFETKKLYAGAILEVC 91

Query: 97  MRKLVFYPEIVGFIEEEKDK-FPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHI 156
             KL  +P++  F+  +K K F  ++I+Y+  S P L LLDD G   E + I  W  + +
Sbjct: 92  GXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSV 151

Query: 157 LQFLQDK 163
            +FL +K
Sbjct: 152 EEFLSEK 158

[Close]
BLAST of Cp4.1LG17g10790 vs. TrEMBL
Match: A0A0A0KA30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087180 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.1e-60
Identity = 121/164 (73.78%), Postives = 131/164 (79.88%), Query Frame = 1 

Query: 1   MQVFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQ+   V   A  V +A  A AIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQGDALDSQ--ITRFSERMIDSITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQ    D        S+     ITYSGAVLEVCMRKLVFYPEIVGFIE++KD+FP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDK 163
           SVK+QY FNSPPKL LLDD+GQHKESIRIDNWKREH LQFLQ+K
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEK 164

[Close]
BLAST of Cp4.1LG17g10790 vs. TrEMBL
Match: B9IQU6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12540g PE=4 SV=2)

HSP 1 Score: 215.3 bits (547), Expect = 5.5e-53
Identity = 104/147 (70.75%), Postives = 121/147 (82.31%), Query Frame = 1 

Query: 18  AWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQ--I 77
           A    + F   +P+  SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+Q    D     
Sbjct: 6   ACGVLLFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCC 65

Query: 78  TRFSERMIDSITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLL 137
           T  S+  I  ITYSGA++EVCMRKLVFYPEIVGFIEEEKD+FP+VK+QY+FNSPPKL +L
Sbjct: 66  TEDSDDSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIML 125

Query: 138 DDEGQHKESIRIDNWKREHILQFLQDK 163
           DDEGQHKE+IRIDNWKREH+LQFLQ+K
Sbjct: 126 DDEGQHKETIRIDNWKREHMLQFLQEK 152

[Close]
BLAST of Cp4.1LG17g10790 vs. TrEMBL
Match: A0A067LJ32_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-52
Identity = 101/136 (74.26%), Postives = 118/136 (86.76%), Query Frame = 1 

Query: 29  MPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQ--ITRFSERMIDSI 88
           +P+A SKEQLSSRECEDLGFTGLALCSDC+T AEY+K+Q    D     T  S+  +  I
Sbjct: 17  LPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLKCCTEDSDDSLSKI 76

Query: 89  TYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLLDDEGQHKESIR 148
           TYSGA+LEVCMRKLVFYPEIVGFIEEEKD+FP+VK+QY+FNSPPKL LLDDEGQHKE++R
Sbjct: 77  TYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLILLDDEGQHKETVR 136

Query: 149 IDNWKREHILQFLQDK 163
           IDNWKREH+LQFL++K
Sbjct: 137 IDNWKREHLLQFLREK 152

[Close]
BLAST of Cp4.1LG17g10790 vs. TrEMBL
Match: M5Y5K8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012718mg PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-51
Identity = 103/145 (71.03%), Postives = 119/145 (82.07%), Query Frame = 1 

Query: 20  AAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQ--ITR 79
           A  ++    +PL  SKEQLS+RECE+LGFTGLALCSDC++LAEY+KDQ    D +   T 
Sbjct: 6   AMLVVLGVVVPLGASKEQLSTRECENLGFTGLALCSDCNSLAEYVKDQELVSDCRKCCTE 65

Query: 80  FSERMIDSITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLLDD 139
            S+  I  +TYSGA+LEVCMRKLVFYPEIVGFIEEEKD+FPSVK+QYIFNSPPKL LLDD
Sbjct: 66  DSDDSISKVTYSGAILEVCMRKLVFYPEIVGFIEEEKDRFPSVKVQYIFNSPPKLILLDD 125

Query: 140 EGQHKESIRIDNWKREHILQFLQDK 163
             +HKE+IRIDNWKREHILQFLQ K
Sbjct: 126 ADEHKETIRIDNWKREHILQFLQGK 150

[Close]
BLAST of Cp4.1LG17g10790 vs. TrEMBL
Match: A0A067FCX2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031251mg PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.8e-51
Identity = 102/145 (70.34%), Postives = 117/145 (80.69%), Query Frame = 1 

Query: 20  AAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQ--ITR 79
           A   I I S     SKEQLS+RECEDLGFTGLALCSDC+T AEY+KDQ    D     T 
Sbjct: 9   AVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTE 68

Query: 80  FSERMIDSITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLLDD 139
            S+  +  ITYSGA+LE CMRKLVFYPEIVGFIEEEKDKFP+V++QY+FNSPPKL +LD+
Sbjct: 69  DSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDE 128

Query: 140 EGQHKESIRIDNWKREHILQFLQDK 163
           EGQHKE+IRIDNWKREH+LQFLQ+K
Sbjct: 129 EGQHKETIRIDNWKREHMLQFLQEK 153

[Close]
BLAST of Cp4.1LG17g10790 vs. TAIR10
Match: AT1G05720.1 (AT1G05720.1 selenoprotein family protein)

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-52
Identity = 97/149 (65.10%), Postives = 123/149 (82.55%), Query Frame = 1 

Query: 16  MAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQ- 75
           M   +A +I I +  ++ +KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQ    D   
Sbjct: 9   MVVLSAMMILILASTIS-AKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDCLK 68

Query: 76  -ITRFSERMIDSITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLT 135
                SE  +  +TYSGA+LEVCMRKLVFYPEIVGFIEEEK+KFPSVK+QYIFNSPPKL 
Sbjct: 69  CCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPKLI 128

Query: 136 LLDDEGQHKESIRIDNWKREHILQFLQDK 163
           +LD++G+HKESIRIDNWKREH+LQ++++K
Sbjct: 129 MLDEDGEHKESIRIDNWKREHLLQYMREK 156

[Close]
BLAST of Cp4.1LG17g10790 vs. NCBI nr
Match: gi|659120099|ref|XP_008460012.1| (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62
Identity = 126/164 (76.83%), Postives = 134/164 (81.71%), Query Frame = 1 

Query: 1   MQVFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQ+   V  PAT V +   AAAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQGDALDSQ--ITRFSERMIDSITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQ    D        S+     ITYSGAVLEVCMRKLVFYPEIVGFIEE+KD+FP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDK 163
           SVK+QY FNSPPKL LLDDEGQHKESIRIDNWKREH LQFLQ+K
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEK 164

[Close]
BLAST of Cp4.1LG17g10790 vs. NCBI nr
Match: gi|449445674|ref|XP_004140597.1| (PREDICTED: 15 kDa selenoprotein [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 8.7e-60
Identity = 121/164 (73.78%), Postives = 131/164 (79.88%), Query Frame = 1 

Query: 1   MQVFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQ+   V   A  V +A  A AIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQGDALDSQ--ITRFSERMIDSITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQ    D        S+     ITYSGAVLEVCMRKLVFYPEIVGFIE++KD+FP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDK 163
           SVK+QY FNSPPKL LLDD+GQHKESIRIDNWKREH LQFLQ+K
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEK 164

[Close]
BLAST of Cp4.1LG17g10790 vs. NCBI nr
Match: gi|743917732|ref|XP_011002858.1| (PREDICTED: 15 kDa selenoprotein-like [Populus euphratica])

HSP 1 Score: 215.3 bits (547), Expect = 7.9e-53
Identity = 104/147 (70.75%), Postives = 122/147 (82.99%), Query Frame = 1 

Query: 18  AWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQ--I 77
           A    + F   +P+A SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+Q    D     
Sbjct: 6   ACGVLLFFAFLLPIAKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCC 65

Query: 78  TRFSERMIDSITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLL 137
           T  S+  I  ITYSGA++EVCMRKLVFYPEIVGFIEEEKD+FP+VK+QY+FNSPPKL +L
Sbjct: 66  TEDSDDSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIML 125

Query: 138 DDEGQHKESIRIDNWKREHILQFLQDK 163
           DDEG+HKE+IRIDNWKREH+LQFLQ+K
Sbjct: 126 DDEGRHKETIRIDNWKREHMLQFLQEK 152

[Close]
BLAST of Cp4.1LG17g10790 vs. NCBI nr
Match: gi|566242499|ref|XP_002326051.2| (hypothetical protein POPTR_0019s12540g [Populus trichocarpa])

HSP 1 Score: 215.3 bits (547), Expect = 7.9e-53
Identity = 104/147 (70.75%), Postives = 121/147 (82.31%), Query Frame = 1 

Query: 18  AWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQ--I 77
           A    + F   +P+  SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+Q    D     
Sbjct: 6   ACGVLLFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCC 65

Query: 78  TRFSERMIDSITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLL 137
           T  S+  I  ITYSGA++EVCMRKLVFYPEIVGFIEEEKD+FP+VK+QY+FNSPPKL +L
Sbjct: 66  TEDSDDSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIML 125

Query: 138 DDEGQHKESIRIDNWKREHILQFLQDK 163
           DDEGQHKE+IRIDNWKREH+LQFLQ+K
Sbjct: 126 DDEGQHKETIRIDNWKREHMLQFLQEK 152

[Close]
BLAST of Cp4.1LG17g10790 vs. NCBI nr
Match: gi|802554732|ref|XP_012065054.1| (PREDICTED: 15 kDa selenoprotein [Jatropha curcas])

HSP 1 Score: 213.8 bits (543), Expect = 2.3e-52
Identity = 101/136 (74.26%), Postives = 118/136 (86.76%), Query Frame = 1 

Query: 29  MPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQGDALDSQ--ITRFSERMIDSI 88
           +P+A SKEQLSSRECEDLGFTGLALCSDC+T AEY+K+Q    D     T  S+  +  I
Sbjct: 17  LPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLKCCTEDSDDSLSKI 76

Query: 89  TYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLLDDEGQHKESIR 148
           TYSGA+LEVCMRKLVFYPEIVGFIEEEKD+FP+VK+QY+FNSPPKL LLDDEGQHKE++R
Sbjct: 77  TYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLILLDDEGQHKETVR 136

Query: 149 IDNWKREHILQFLQDK 163
           IDNWKREH+LQFL++K
Sbjct: 137 IDNWKREHLLQFLREK 152

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g10790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SEP15_DANRE9.1e-1735.4315 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2[more]
SEP15_BOVIN1.1e-1433.8615 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2[more]
SEP15_HUMAN1.9e-1433.8615 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3[more]
SEP15_RAT2.5e-1433.0715 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3[more]
SEP15_PIG4.2e-1433.0715 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2[more]
BLAST of Cp4.1LG17g10790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA30_CUCSA6.1e-6073.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087180 PE=4 SV=1[more]
B9IQU6_POPTR5.5e-5370.75Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12540g PE=4 SV=2[more]
A0A067LJ32_JATCU1.6e-5274.26Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1[more]
M5Y5K8_PRUPE1.4e-5171.03Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012718mg PE=4 SV=1[more]
A0A067FCX2_CITSI1.8e-5170.34Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031251mg PE=4 SV=1[more]
BLAST of Cp4.1LG17g10790 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05720.11.4e-5265.10 selenoprotein family protein[more]
BLAST of Cp4.1LG17g10790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120099|ref|XP_008460012.1|1.1e-6276.83PREDICTED: 15 kDa selenoprotein [Cucumis melo][more]
gi|449445674|ref|XP_004140597.1|8.7e-6073.78PREDICTED: 15 kDa selenoprotein [Cucumis sativus][more]
gi|743917732|ref|XP_011002858.1|7.9e-5370.75PREDICTED: 15 kDa selenoprotein-like [Populus euphratica][more]
gi|566242499|ref|XP_002326051.2|7.9e-5370.75hypothetical protein POPTR_0019s12540g [Populus trichocarpa][more]
gi|802554732|ref|XP_012065054.1|2.3e-5274.26PREDICTED: 15 kDa selenoprotein [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014912Sep15_SelM
IPR012336Thioredoxin-like_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g10790.1Cp4.1LG17g10790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 83..163
score: 1.9
IPR014912Sep15/SelM redoxPFAMPF08806Sep15_SelMcoord: 91..163
score: 5.8
NoneNo IPR availablePANTHERPTHR13077FAMILY NOT NAMEDcoord: 11..162
score: 4.2
NoneNo IPR availablePANTHERPTHR13077:SF615 KDA SELENOPROTEINcoord: 11..162
score: 4.2