CmoCh17G006020 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G006020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description15 kDa selenoprotein
LocationCmo_Chr17 : 6383272 .. 6386627 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAAGAATTGGTCTTTTCAGTGAGTGTTCTCTTCTGATTGTCTCGAGGCTTTGCTTCTTCACCCACAGTCGCCGGGCGAACACAGAGATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGGTGATGCGTTTGATTCACTGGATTTTTAATTTTTTTTTTTTATACGCATTCTTGATTCGGCTTCGAATTTATATCTTTGTTATTGCATTTCTTCCATTTTCGTGACTATTTCTCGTGAATTCGGAGCAGCTTAATGATTTTGTTCGCTTATTTTCTTGATCTTCTGCGTTCTTTTGAATGATTGATTGTTCATCTTGTGTTGGGTTTGATTACGGATCTTTTTTTGCTTGATTTAGACTTGGGATTTCCGGATTACTTTGTTGTAGTCTGGATGTATTAGTGTTGGCTTTAATTTCGATATTTGAATCAATTTCTTAGTATTGTGGATAGAGTTTGCTAATGTTAGTTCTTATTTTGTTCGAAGATATGTTGGTGATGAGTTGAGAGACAGACTTAGGGTCCTTCTTCTCTTGATTGTCCGAGAATTTGTTAGGGAAGAAGATGGTTTCTGAAATTCTGATGTGATAATTTATCTTTTTTTCAAGTTTTTTCAAGAGATTACAAAACTGCGTCCAGAGATTGAATTGTGGGAAGAAAGAAGTCCTCAACATTTTGAAGCGATAGATCATCTTGTTTCTTCTGTGATTTGTTGATTATGTTTTTCAGAAATTATGTATCATGTCTTTCTCATAAGTCGTGATTTGAATGCAATTAGTGATTGTTAGTGTTATTCCTTTTGGTTACTTTCTTTTTATTTTTTGCAATGACCTTTTTCCACACCCTTTTTGATTGTTAAGCCCCAGCATAATTTTAGAGGCCGAACGGGGTTTTGGACCTTTTTCCAAACCCTTTTTTAGCTTTGTTTTCACATACATCTATTTGTTTTAGTTAAATTAAAGACATTCTTTCTTGTGAATATTGATTTCAAGTGCATTTATTATGTGCCATGTGATCACAACTCTAAAAGAATAGGAGTTGTAACAGTCTCCAAAGTGGTCATATTTGCTAAATGTGAAGAGGCTTATAAAGTTGGTTAGGAAAATTGTTTTCCACGCATTAGACTGTAAGGGCACTTTATAAAATCCTACAGGCTCCCTGTCTCTTCTCCCAATCATAGTTCTTGAAAATAGTTTTAAAAACAATAGCAGTAGCCAGTCTTTTCAAAATAGCACCCAAACATCACTTTTCGGAAAAAATAAGAAAATGATATGGTAGTTTAAGAATTTGTAAGTTTACAAATGAGTTTTACGTAAACATGTCAAAAGATGTAATTTCTAATGATGAATTCAGTGATTGTTGCACTGGCAATTCTGGCAACGCTGGATTTGCGGATTGCTAAGGACTTCAAATAGTTTTTATCCAAAATCCAGAAGAAAAAAGAAGTGATAGTATGCAAAATCTGTAACCGCTTTGTGTCAGCTTATGCAATAATTTTGAAATTTATTGTTTTTAATATTACACGCAATCCTCATGCCCAGATTTGTACTGCAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACAAGTAAGGTATGCAAAATGTTATAAATTTGCTGATTTATGGAAGGGGAATCAATGACATCTTGTTTCTCCCCCACAAATTTCATTAACTTACCATTTCATTTGTGATTAATGCATCACACTTATAAACTGAATGCTTGTACGGCCCTGTGGTAGAGATGTCAATCGAAAACACATTAGTTTAACATATTACATAGGACTAACAATTTCTGCTTTTATGTAATTATCACAACTATGGTCCAAAATAAGGTTTCAGTAAACAAGGGAAACTAAGTCATTTTAAGAAAAAGGTGATTTAAGGGATGTGCAATGCAACCTATTAATTCCCCTTATTTTGTAAATTACCGTAGGTACATATCCATAGTATTTTAATTTTCTTACATCAGTGTTTCAAACTTCTGGTCAGATATTCCACACTCGTTATGAGACAATTACTTATTCCAAGAGGCTAGTAGTATGTTTCCCTTTTCCACTTAGCCCTATACCCTTCCATGGTGTTACAGGGACTACTGCTCTATGATAAAGGAGATCTTGATGAACTCTCCTTTTCGAGATAAAGGAAGATTGTTGTCGTAGGCTTGCTCCTTTGATATCTTGTGAGATTTGTGACTTGAGGGGAATAGTAGGATCTTCAGAGGGTCTGGCAGGTCCATTACTTGGAGTTTTTGTAACTATTAGTTTAGTCTTGTACTTTTTGACTGGTGTTCATTCTTGTAGGTTGTTGAAAACTCCTTTTGGGAGCTTGTTTTTTATATGCCCCATATATTATTTTATTTCTCTCGATGAAAGTTCTTTTTCTTTTCTTTTTCTTTTTTAAAGAAAAACACTAAAAATGCAAGAAACGTCCTTGAAAATTCTGCTATTACACTCGCACCAAAGATTCCAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAAGTAAAACTAGGTTGATGGCTAGCAATAAAGTCTTGTTAAAACCTTGAAAAGGATGTCCCAGGGAGAAATGCCTCATATACATCCAGAATTTTGATCCTCTCAATCTCCCAGTTCAGTACTCTGTTGGTTGTATTTCATAAGTATATGCATGTGGGTGTCTTTTCATTTATTTTGACAAAGGATGAAAGCCAAGTTCATTGACTGCAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGTAACTTCTGAAGCGCCAAGACTTTCCCATCTTATACTGTCTGCATCACACATATAATATATCAGAGCAAAATCAAGTGAATGAAGAATGTTTGAGGAGGTTAATATAGTGTATAGAAGGATATAGATTTTGTAATGACCGTTGATAATCTCGATATCACACATAAGGTGAAAATTTTTTTTTTGAACATTTTTCCCCTTTTTTTTTGCAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCTGCAATTTAA

mRNA sequence

TTAAGAATTGGTCTTTTCAGTGAGTGTTCTCTTCTGATTGTCTCGAGGCTTTGCTTCTTCACCCACAGTCGCCGGGCGAACACAGAGATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACAAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCTGCAATTTAA

Coding sequence (CDS)

ATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACAAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCTGCAATTTAA
Homology
[Close]
BLAST of CmoCh17G006020 vs. Swiss-Prot
Match: SEP15_BOVIN (15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-18
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1 

Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           + SS  C +LGF+   LCS C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 152 SVEEFLSEKLER 161

[Close]
BLAST of CmoCh17G006020 vs. Swiss-Prot
Match: SEP15_HUMAN (15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3)

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-18
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1 

Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           + SS  C +LGF+   LCS C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSEACRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 152 SVEEFLSEKLER 161

[Close]
BLAST of CmoCh17G006020 vs. Swiss-Prot
Match: SEP15_DANRE (15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 1 

Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 143 SVEEFLSEKLER 152

[Close]
BLAST of CmoCh17G006020 vs. Swiss-Prot
Match: SEP15_PIG (15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-17
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1 

Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           + SS  C +LGF+   LC  C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 152 SVEEFLSEKLQR 161

[Close]
BLAST of CmoCh17G006020 vs. Swiss-Prot
Match: SEP15_RAT (15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-16
Identity = 54/160 (33.75%), Postives = 82/160 (51.25%), Query Frame = 1 

Query: 6   GVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQE 65
           G   PA  + +  A  F A   L     + SS  C +LGF+   LCS C  L ++     
Sbjct: 7   GWLRPALGLRLLLATAFQAVSALG---AEFSSEACRELGFSSNLLCSSCDLLGQF-NLLP 66

Query: 66  LVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYT 125
           L   C  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  + ++Y 
Sbjct: 67  LDPVCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYV 126

Query: 126 FNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQ 165
             S P L LLDD G   E + I  W  + + +FL EK+++
Sbjct: 127 RGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLER 161

[Close]
BLAST of CmoCh17G006020 vs. TrEMBL
Match: A0A0A0KA30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087180 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.0e-78
Identity = 151/172 (87.79%), Postives = 159/172 (92.44%), Query Frame = 1 

Query: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV N A  VT+   ATAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           SV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171

[Close]
BLAST of CmoCh17G006020 vs. TrEMBL
Match: A0A067LJ32_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.4e-67
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 1 

Query: 26  MPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKI 85
           +P+A SKEQLSSRECEDLGFTGLALCSDC+T AEY+K+QELV+DCLKCCTEDSDD+ SKI
Sbjct: 17  LPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLKCCTEDSDDSLSKI 76

Query: 86  TYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIR 145
           TYSGA+LEVCMRKLVFYPEIVGFIEEEKDQFP+V VQY FNSPPKLILLDDEGQHKE++R
Sbjct: 77  TYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLILLDDEGQHKETVR 136

Query: 146 IDNWKREHILQFLKEKVKQRSS 168
           IDNWKREH+LQFL+EKVK  SS
Sbjct: 137 IDNWKREHLLQFLREKVKHASS 158

[Close]
BLAST of CmoCh17G006020 vs. TrEMBL
Match: B9IQU6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12540g PE=4 SV=2)

HSP 1 Score: 259.2 bits (661), Expect = 3.4e-66
Identity = 121/148 (81.76%), Postives = 137/148 (92.57%), Query Frame = 1 

Query: 20  IIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSD 79
           + F   +P+  SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELV+DCLKCCTEDSD
Sbjct: 11  LFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 80  DATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQ 139
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIEEEKDQFP+V VQY FNSPPKLI+LDDEGQ
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGQ 130

Query: 140 HKESIRIDNWKREHILQFLKEKVKQRSS 168
           HKE+IRIDNWKREH+LQFL+EKVK  S+
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPASA 158

[Close]
BLAST of CmoCh17G006020 vs. TrEMBL
Match: D7T2E2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00490 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.2e-65
Identity = 122/149 (81.88%), Postives = 139/149 (93.29%), Query Frame = 1 

Query: 22  FIASMPLAWS-KEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDD 81
           F+  +PLA S +E LSS+ECE+LGF+GLALCSDC+TLAEY+KDQELV+DCLKCCTEDSDD
Sbjct: 3   FLVVVPLASSSREVLSSKECENLGFSGLALCSDCNTLAEYVKDQELVSDCLKCCTEDSDD 62

Query: 82  ATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQH 141
           + SKITYSGA+LEVCMRKLVFYPE+VGFIEEEKD+FPSV VQY FNSPPKLI+LDD+GQH
Sbjct: 63  SMSKITYSGAILEVCMRKLVFYPEVVGFIEEEKDKFPSVKVQYLFNSPPKLIMLDDDGQH 122

Query: 142 KESIRIDNWKREHILQFLKEKVKQRSSAI 170
           KE+IRIDNWKREHILQFL+EKVK  SSAI
Sbjct: 123 KETIRIDNWKREHILQFLREKVKPASSAI 151

[Close]
BLAST of CmoCh17G006020 vs. TrEMBL
Match: V4U1J4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022516mg PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.9e-64
Identity = 120/152 (78.95%), Postives = 134/152 (88.16%), Query Frame = 1 

Query: 17  ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTE 76
           A   I I S     SKEQLS+RECEDLGFTGLALCSDC+T AEY+KDQELV DCLKCCTE
Sbjct: 9   AVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTE 68

Query: 77  DSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDD 136
           DSDD+ SKITYSGA+LE CMRKLVFYPEIVGFIEEEKD+FP+V VQY FNSPPKLI+LD+
Sbjct: 69  DSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDE 128

Query: 137 EGQHKESIRIDNWKREHILQFLKEKVKQRSSA 169
           EGQHKE+IRIDNWKREH+LQFL+EKVK  S++
Sbjct: 129 EGQHKETIRIDNWKREHMLQFLQEKVKPTSAS 160

[Close]
BLAST of CmoCh17G006020 vs. TAIR10
Match: AT1G05720.1 (AT1G05720.1 selenoprotein family protein)

HSP 1 Score: 245.0 bits (624), Expect = 3.4e-65
Identity = 111/158 (70.25%), Postives = 143/158 (90.51%), Query Frame = 1 

Query: 11  ATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDC 70
           A MV ++  +I I +  ++ +KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELV+DC
Sbjct: 7   AKMVVLSAMMILILASTIS-AKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDC 66

Query: 71  LKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPK 130
           LKCC +DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIEEEK++FPSV VQY FNSPPK
Sbjct: 67  LKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPK 126

Query: 131 LILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSA 169
           LI+LD++G+HKESIRIDNWKREH+LQ+++EKVK  +++
Sbjct: 127 LIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAAS 163

[Close]
BLAST of CmoCh17G006020 vs. NCBI nr
Match: gi|659120099|ref|XP_008460012.1| (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 2.7e-80
Identity = 155/172 (90.12%), Postives = 160/172 (93.02%), Query Frame = 1 

Query: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV NPAT VT+   A AIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEE+KDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           SV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171

[Close]
BLAST of CmoCh17G006020 vs. NCBI nr
Match: gi|449445674|ref|XP_004140597.1| (PREDICTED: 15 kDa selenoprotein [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 4.3e-78
Identity = 151/172 (87.79%), Postives = 159/172 (92.44%), Query Frame = 1 

Query: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV N A  VT+   ATAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           SV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171

[Close]
BLAST of CmoCh17G006020 vs. NCBI nr
Match: gi|802554732|ref|XP_012065054.1| (PREDICTED: 15 kDa selenoprotein [Jatropha curcas])

HSP 1 Score: 263.1 bits (671), Expect = 3.4e-67
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 1 

Query: 26  MPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKI 85
           +P+A SKEQLSSRECEDLGFTGLALCSDC+T AEY+K+QELV+DCLKCCTEDSDD+ SKI
Sbjct: 17  LPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLKCCTEDSDDSLSKI 76

Query: 86  TYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIR 145
           TYSGA+LEVCMRKLVFYPEIVGFIEEEKDQFP+V VQY FNSPPKLILLDDEGQHKE++R
Sbjct: 77  TYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLILLDDEGQHKETVR 136

Query: 146 IDNWKREHILQFLKEKVKQRSS 168
           IDNWKREH+LQFL+EKVK  SS
Sbjct: 137 IDNWKREHLLQFLREKVKHASS 158

[Close]
BLAST of CmoCh17G006020 vs. NCBI nr
Match: gi|743917732|ref|XP_011002858.1| (PREDICTED: 15 kDa selenoprotein-like [Populus euphratica])

HSP 1 Score: 259.2 bits (661), Expect = 4.9e-66
Identity = 121/148 (81.76%), Postives = 138/148 (93.24%), Query Frame = 1 

Query: 20  IIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSD 79
           + F   +P+A SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELV+DCLKCCTEDSD
Sbjct: 11  LFFAFLLPIAKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 80  DATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQ 139
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIEEEKDQFP+V VQY FNSPPKLI+LDDEG+
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGR 130

Query: 140 HKESIRIDNWKREHILQFLKEKVKQRSS 168
           HKE+IRIDNWKREH+LQFL+EKVK  S+
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPTSA 158

[Close]
BLAST of CmoCh17G006020 vs. NCBI nr
Match: gi|566242499|ref|XP_002326051.2| (hypothetical protein POPTR_0019s12540g [Populus trichocarpa])

HSP 1 Score: 259.2 bits (661), Expect = 4.9e-66
Identity = 121/148 (81.76%), Postives = 137/148 (92.57%), Query Frame = 1 

Query: 20  IIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSD 79
           + F   +P+  SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELV+DCLKCCTEDSD
Sbjct: 11  LFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 80  DATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQ 139
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIEEEKDQFP+V VQY FNSPPKLI+LDDEGQ
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGQ 130

Query: 140 HKESIRIDNWKREHILQFLKEKVKQRSS 168
           HKE+IRIDNWKREH+LQFL+EKVK  S+
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPASA 158

The following BLAST results are available for this feature:
BLAST of CmoCh17G006020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SEP15_BOVIN5.0e-1837.1215 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2[more]
SEP15_HUMAN8.5e-1837.1215 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3[more]
SEP15_DANRE1.4e-1736.3615 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2[more]
SEP15_PIG1.9e-1736.3615 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2[more]
SEP15_RAT2.7e-1633.7515 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3[more]
BLAST of CmoCh17G006020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA30_CUCSA3.0e-7887.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087180 PE=4 SV=1[more]
A0A067LJ32_JATCU2.4e-6785.92Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1[more]
B9IQU6_POPTR3.4e-6681.76Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12540g PE=4 SV=2[more]
D7T2E2_VITVI2.2e-6581.88Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00490 PE=4 SV=... [more]
V4U1J4_9ROSI1.9e-6478.95Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022516mg PE=4 SV=1[more]
BLAST of CmoCh17G006020 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05720.13.4e-6570.25 selenoprotein family protein[more]
BLAST of CmoCh17G006020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120099|ref|XP_008460012.1|2.7e-8090.12PREDICTED: 15 kDa selenoprotein [Cucumis melo][more]
gi|449445674|ref|XP_004140597.1|4.3e-7887.79PREDICTED: 15 kDa selenoprotein [Cucumis sativus][more]
gi|802554732|ref|XP_012065054.1|3.4e-6785.92PREDICTED: 15 kDa selenoprotein [Jatropha curcas][more]
gi|743917732|ref|XP_011002858.1|4.9e-6681.76PREDICTED: 15 kDa selenoprotein-like [Populus euphratica][more]
gi|566242499|ref|XP_002326051.2|4.9e-6681.76hypothetical protein POPTR_0019s12540g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR014912Sep15_SelM
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G006020.1CmoCh17G006020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 73..166
score: 3.24
IPR014912Sep15/SelM redoxPFAMPF08806Sep15_SelMcoord: 90..162
score: 1.3
NoneNo IPR availablePANTHERPTHR13077FAMILY NOT NAMEDcoord: 8..168
score: 1.0
NoneNo IPR availablePANTHERPTHR13077:SF615 KDA SELENOPROTEINcoord: 8..168
score: 1.0