Carg18916 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18916
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	15 kDa selenoprotein
Location	Cucurbita_argyrosperma_scaffold_086 : 131588 .. 135645 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATATCACTCTCTAAATTTGAAGTTAAGAATTGGTCTTTTCAGTGAGTGTTCTCTTCTGATCGTCTCGAGGCTTTGCTTCTTCTTCACCCACAGTCGCCGGCGAACACAGAGATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGGTGATGCGTTTGATTCACTGGATTTTTTTTTAATTTTTTTATTTTTATACGCATTCTTGATTCGGCTTCGAATTTATATCTTTGTTATTGCATTTCTTCCATTTTCGTGACTATTTCTCGTGAATTCGGAGCAGCTTAATGATTTTGTTCGCTTATTTTCTTGATCTTCTGCGTTCTTTTGAATGATTGATTGTTCATCTTGTGTTGGATTTGATTACGGATCTTTTTTTGCTTGATTTAGACTTGGGATTTCCGGATTACTTTGTTGTAGTCTGGATGTATTAGTGTTGGCTTTAATTTCGATATTTGAATCAATTTCTTAGTATTGTGGATAGAGTTTGCTAATGTTAGTTCTTATTTTGTTCGAAGATATGTTGGTGATGAGTTGAGAGACAGACTTAGGGTCCTTCTTCTGTGATTGTCCGAGAATTTGTTAGGGAAGAAGATGGTTTCTGAAATTCTGGTGTAATAATTCATCTTTTTTTCAAGTTTTTTCAAGAGATTACAAAACTGCGTCCAGAGATTGAATTGTGGGAAGAAAGAAGTCCTCAACATTTTGAAGCGATAGATCATCTTGTTCCTTCTGTGATTTGTTGATTATGTTTTTCAGGAATTATGTATCATGTCTTTCTGATAAGTCGTGATTTGAATGCAATTAGTGATTGTTAGTGTTATTCCTTTTGGTTACTTTCTTTTTATTTTTTGCAATGACCTTTTTCCACAAGTGGAAATGACTTCATGTCTCCATCCACACTGACCATATAATCTTTTGATTATATACAACTCTCTGTGGAACGGAGAGCGCCCCTTTTTGATCGCTAAGCCCCAGCATAATTTTAGAGGCCGAACGGGGGTTTTGGAACTATTTTGAGAAACAACCCTCTGTGTACATTTTCAACTATTTTTAAAAAGTTGTACACTTGTTTTTTTAGCTTTGTTTTCACATACATCTATTTGTTTTAGTTAAATTGAAGACATTCTTTCTTGTGAATATTGATTTCAAGTGCATTTATTATGTGTCATCTGATCACAACTCTAAAAGAATAGGAGTTTGGACAGTCTCCAAAGTGGCCATATTTTCGAAATGTGAAGAGGCTTATAAAGTTGGTTAGGGAAATTGTTTTCCACGCATTAGACTGTAAGGGCACTTTATAAAATCCTACATTCTCCCTGTCTCTTCTCCCAATCATAGTTCTTGAAAATAGTTTTAAAAACAATAGCAGTAGCCAGTCTTTTCAAAATAGCACCCGAACATCTCTTTTCGGAAAAAAAAAAAAAAAAAAGAAAAGAAAAAGAAAAGAAAATGCTATGGTATTTGGCTTGGCTGGAGGAGATTCTTTTACCTCTTCCCCCCTCTCTGAGTTCCAGGATTTTCAAACGTTTATGCACCTGCATGTGGAAACAAGAAATGGATTGCAAGATGTGGAGATAACATATTGCCTTTTAGTTTTGTAGTTTAAGAATTTGTAAGTTTACAAATGAGTTTTACGTAAACATGTCAAAAGATGTAATTTCTAATGATGAATTCAGTGATTTTTGCACTGGCAATTCTGGCAACGCTGGATTTGCGGATTGCTAAGGACTAAAAATAGTTTTTATCCAAAATCCAGAAGAAAAAAGAGCTGATAGTATGCAAAATCTGCAACCGTTTTGTGTCAGCTTATGCAATAATTTTGAAATTTATTGTTTTTTATATTACACGCTATCCTCATGCCCAGATTTGTACTGCAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGGTATGCAAAATGTTATAAATTTGCTGATTTCTGGAAGGGGAATCAATGAAATCTTGTTTCTCCCCCAAAAATTGCATTAACTTACCATTCCATTTGTGATTAATATATCACACTTATAAACTGAATGCTTGTTCGGCCCTGTGGTAGATATGTCAATCGAAAACACATTAGTTTAACATATTACATAGGACTAACAATTTCTGCCTTTATGTAATTATCACAACTATGGTCCAAATAAGGTTTCAGTGAACAAGGGAAACTAAGTCAGTTTAAGAAAAAGGTGATTCAAGGGATGTGCAACGCATTTATCAATGCATATCACAACCCTGTTGAAGTGGGGGATTATGATCAAGTGCAACCTATTAATTCCCCTTATTTTGTAAATTACCATAGGTACATGTCCATAGTATTTTAATTTTTCTTACATCAGTGTTTCAAACTTCTGGACAGATATTCCACACTCGTTATGAGACAATTACTTATTCCAAGAGGCTAGTAGTTTGTTTCCCTTTTCCACTTAGCCCTATACCCTTCCATGGTGTTACAGGGACTACTGCTCTATGATAAAGGAGATCTTGATGAGCTCTCCTTTTCGAGATAAAGGAAGATTGTTGTCCTAGGCTTGCTCCTTTGATATCTTTTGAGATTTGTGACTTGAGGGGAATAGTAGGATCTTCAGAGGGGCTGACAGGTTCATTACTTGGAGTTTTTGTAACTATTAGTTTAGTCTTATACTTTTTGAAAGGTGTTCATTCTCGTAGGTTGTTAAAAGCTCCTTTTGGGAGCTTGTTTTTTGTATGCCCCATATATTATTTTATTTCTCTCGATGAAAGTTATTTTGTTTAAAAAAAAAAACACTTAAAAGTGCAAGAAACGTCCTTGAAAATTCTGCAATTACACTCGCACCAAAGATTCCAAAAAAAAAAAAAGAAAAAGAAAAAGGAAAAGAAAAGAAAAACTAGGTTGACGCCTAGGTTGATGGCTAGCCATAAAGTCTTGTTAAACCTTGAAAGGGATGTCCCAGGGAGAAATGCCTCGTATGCATTCAGAATTTTTATCCTCTCAAACTCCCCAGTTCAGTACTCTGTTGGTTGTATTTCATAACTATTTGCATGTGGGTGTCTTTTCATTTATTTTGACAAAGGATGAAAGCCAAGTTCATTGACTGCAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGTAACTTCTGAAGCGCCAAGACTTACCCAAATGACATCTTATACTGTCTGCATCACTCATAAATATATCAGAGCAAAATCAAGTGAATGAAGAATGTTTGAGGAGGTTAAGATAGTGTATAGAACGATATAGATTTCGTAATGATCGTTGATAATCTCGACATCACACATAAGGTGAAAAAAAAGATTTGAACATTTTCCCCCTTTTTTTTGCAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCAGCAATTTAAGGTTCTCACTTTTTTCCCTTCTTAATCTCTGTAAAAAAAACTTAATGCAGAATTTGAACGAAACTATTATCAGCCAAAAAACTTGAGGTGAGTGAACACTAATTTTGTCAATGTCGTCAAGGATAGTTGGAAAGATAACTGATTTCCTCGTCTAAATCTTTTACTCCTTAAAAATCCTTTAGAAGTTTGACTGATCTTTTATAAAATTTTGTACACATTGTTGTTTACACGCTTTATCATCTAACAACGTTGTATCTAGCCCGATCATTTTTTTTCCCTATCTATAATGTAAACCAATCTAACCTTTTTTTTTTTT

mRNA sequence

AAAAATATCACTCTCTAAATTTGAAGTTAAGAATTGGTCTTTTCAGTGAGTGTTCTCTTCTGATCGTCTCGAGGCTTTGCTTCTTCTTCACCCACAGTCGCCGGCGAACACAGAGATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCAGCAATTTAAGGTTCTCACTTTTTTCCCTTCTTAATCTCTGTAAAAAAAACTTAATGCAGAATTTGAACGAAACTATTATCAGCCAAAAAACTTGAGGTGAGTGAACACTAATTTTGTCAATGTCGTCAAGGATAGTTGGAAAGATAACTGATTTCCTCGTCTAAATCTTTTACTCCTTAAAAATCCTTTAGAAGTTTGACTGATCTTTTATAAAATTTTGTACACATTGTTGTTTACACGCTTTATCATCTAACAACGTTGTATCTAGCCCGATCATTTTTTTTCCCTATCTATAATGTAAACCAATCTAACCTTTTTTTTTTTT

Coding sequence (CDS)

ATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCAGCAATTTAA

Protein sequence

MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI

Homology

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BLAST of Carg18916 vs. NCBI nr
Match: XP_022954272.1 (selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342.8 bits (878), Expect = 6.6e-91
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60
           MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY
Sbjct: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60

Query: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120
           IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN
Sbjct: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120

Query: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
Sbjct: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

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BLAST of Carg18916 vs. NCBI nr
Match: XP_022992419.1 (selenoprotein F-like [Cucurbita maxima])

HSP 1 Score: 339.3 bits (869), Expect = 7.3e-90
Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60
           MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY
Sbjct: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60

Query: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120
           IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEK QFPSVN
Sbjct: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKYQFPSVN 120

Query: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
Sbjct: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

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BLAST of Carg18916 vs. NCBI nr
Match: XP_008460012.1 (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 5.2e-80
Identity = 155/172 (90.12%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV NPAT VT+   A AIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEE+KDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           SV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171

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BLAST of Carg18916 vs. NCBI nr
Match: XP_023004122.1 (selenoprotein F-like [Cucurbita maxima])

HSP 1 Score: 299.7 bits (766), Expect = 6.4e-78
Identity = 149/170 (87.65%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTMA---TAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQL   VK PAT+V MA    AIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV DCLKCCTEDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEEEKD+FP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSS 168
           SV VQY FNSPPKL LLDDEGQHKESIRIDNWKREHILQFL++KVK  S+
Sbjct: 121 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSA 170

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BLAST of Carg18916 vs. NCBI nr
Match: XP_004140597.1 (PREDICTED: 15 kDa selenoprotein [Cucumis sativus] >KGN46338.1 hypothetical protein Csa_6G087180 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 8.3e-78
Identity = 151/172 (87.79%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV N A  VT+   ATAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           SV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171

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BLAST of Carg18916 vs. TAIR10
Match: AT1G05720.1 (selenoprotein family protein)

HSP 1 Score: 245.0 bits (624), Expect = 3.4e-65
Identity = 111/158 (70.25%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 11  ATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDC 70
           A MV ++  +I I +  ++ +KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELV+DC
Sbjct: 7   AKMVVLSAMMILILASTIS-AKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDC 66

Query: 71  LKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPK 130
           LKCC +DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIEEEK++FPSV VQY FNSPPK
Sbjct: 67  LKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPK 126

Query: 131 LILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSA 169
           LI+LD++G+HKESIRIDNWKREH+LQ+++EKVK  +++
Sbjct: 127 LIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAAS 163

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BLAST of Carg18916 vs. Swiss-Prot
Match: sp|A8YXY3|SEP15_BOVIN (Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.1e-18
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 152 SVEEFLSEKLER 161

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BLAST of Carg18916 vs. Swiss-Prot
Match: sp|O60613|SEP15_HUMAN (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4)

HSP 1 Score: 91.7 bits (226), Expect = 8.6e-18
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 35  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 94

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 95  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 154

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 155 SVEEFLSEKLER 164

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BLAST of Carg18916 vs. Swiss-Prot
Match: sp|Q802F3|SEP15_DANRE (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 143 SVEEFLSEKLER 152

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BLAST of Carg18916 vs. Swiss-Prot
Match: sp|A1Z623|SEP15_PIG (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-17
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           + SS  C +LGF+   LC  C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 152 SVEEFLSEKLQR 161

[Close]

BLAST of Carg18916 vs. Swiss-Prot
Match: sp|Q923V8|SEP15_RAT (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 54/160 (33.75%), Postives = 82/160 (51.25%), Query Frame = 0


Query: 6   GVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQE 65
           G   PA  + +  A  F A   L     + SS  C +LGF+   LCS C  L ++     
Sbjct: 7   GWLRPALGLRLLLATAFQAVSALG---AEFSSEACRELGFSSNLLCSSCDLLGQF-NLLP 66

Query: 66  LVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYT 125
           L   C  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  + ++Y 
Sbjct: 67  LDPVCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYV 126

Query: 126 FNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQ 165
             S P L LLDD G   E + I  W  + + +FL EK+++
Sbjct: 127 RGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLER 161

[Close]

BLAST of Carg18916 vs. TrEMBL
Match: tr|A0A1S3CC00|A0A1S3CC00_CUCME (15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.5e-80
Identity = 155/172 (90.12%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV NPAT VT+   A AIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEE+KDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           SV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171

[Close]

BLAST of Carg18916 vs. TrEMBL
Match: tr|A0A0A0KA30|A0A0A0KA30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 5.5e-78
Identity = 151/172 (87.79%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV N A  VT+   ATAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           SV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171

[Close]

BLAST of Carg18916 vs. TrEMBL
Match: tr|A0A067LJ32|A0A067LJ32_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05711 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.4e-67
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 26  MPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKI 85
           +P+A SKEQLSSRECEDLGFTGLALCSDC+T AEY+K+QELV+DCLKCCTEDSDD+ SKI
Sbjct: 17  LPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLKCCTEDSDDSLSKI 76

Query: 86  TYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIR 145
           TYSGA+LEVCMRKLVFYPEIVGFIEEEKDQFP+V VQY FNSPPKLILLDDEGQHKE++R
Sbjct: 77  TYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLILLDDEGQHKETVR 136

Query: 146 IDNWKREHILQFLKEKVKQRSS 168
           IDNWKREH+LQFL+EKVK  SS
Sbjct: 137 IDNWKREHLLQFLREKVKHASS 158

[Close]

BLAST of Carg18916 vs. TrEMBL
Match: tr|B9IQU6|B9IQU6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G112100v3 PE=4 SV=2)

HSP 1 Score: 259.2 bits (661), Expect = 6.3e-66
Identity = 121/148 (81.76%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 20  IIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSD 79
           + F   +P+  SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELV+DCLKCCTEDSD
Sbjct: 11  LFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 80  DATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQ 139
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIEEEKDQFP+V VQY FNSPPKLI+LDDEGQ
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGQ 130

Query: 140 HKESIRIDNWKREHILQFLKEKVKQRSS 168
           HKE+IRIDNWKREH+LQFL+EKVK  S+
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPASA 158

[Close]

BLAST of Carg18916 vs. TrEMBL
Match: tr|D7T2E2|D7T2E2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0094g00490 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 4.1e-65
Identity = 122/149 (81.88%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 22  FIASMPLA-WSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDD 81
           F+  +PLA  S+E LSS+ECE+LGF+GLALCSDC+TLAEY+KDQELV+DCLKCCTEDSDD
Sbjct: 3   FLVVVPLASSSREVLSSKECENLGFSGLALCSDCNTLAEYVKDQELVSDCLKCCTEDSDD 62

Query: 82  ATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQH 141
           + SKITYSGA+LEVCMRKLVFYPE+VGFIEEEKD+FPSV VQY FNSPPKLI+LDD+GQH
Sbjct: 63  SMSKITYSGAILEVCMRKLVFYPEVVGFIEEEKDKFPSVKVQYLFNSPPKLIMLDDDGQH 122

Query: 142 KESIRIDNWKREHILQFLKEKVKQRSSAI 170
           KE+IRIDNWKREHILQFL+EKVK  SSAI
Sbjct: 123 KETIRIDNWKREHILQFLREKVKPASSAI 151

The following BLAST results are available for this feature:

BLAST of Carg18916 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954272.1	6.6e-91	100.00	selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [...	[more]
XP_022992419.1	7.3e-90	99.41	selenoprotein F-like [Cucurbita maxima]	[more]
XP_008460012.1	5.2e-80	90.12	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]
XP_023004122.1	6.4e-78	87.65	selenoprotein F-like [Cucurbita maxima]	[more]
XP_004140597.1	8.3e-78	87.79	PREDICTED: 15 kDa selenoprotein [Cucumis sativus] >KGN46338.1 hypothetical prote...	[more]

BLAST of Carg18916 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05720.1	3.4e-65	70.25	selenoprotein family protein	[more]

BLAST of Carg18916 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A8YXY3\|SEP15_BOVIN	5.1e-18	36.36	Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2	[more]
sp\|O60613\|SEP15_HUMAN	8.6e-18	36.36	Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4	[more]
sp\|Q802F3\|SEP15_DANRE	1.5e-17	36.36	Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2	[more]
sp\|A1Z623\|SEP15_PIG	1.9e-17	36.36	Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2	[more]
sp\|Q923V8\|SEP15_RAT	2.8e-16	33.75	Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3	[more]

BLAST of Carg18916 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CC00\|A0A1S3CC00_CUCME	3.5e-80	90.12	15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=4 SV=1	[more]
tr\|A0A0A0KA30\|A0A0A0KA30_CUCSA	5.5e-78	87.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 PE=4 SV=1	[more]
tr\|A0A067LJ32\|A0A067LJ32_JATCU	4.4e-67	85.92	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05711 PE=4 SV=1	[more]
tr\|B9IQU6\|B9IQU6_POPTR	6.3e-66	81.76	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G112100v3 PE=...	[more]
tr\|D7T2E2\|D7T2E2_VITVI	4.1e-65	81.88	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0094g00490 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR038219	Sep15/SelM_sf
IPR014912	Sep15_SelM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18916-RA	Carg18916-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014912	Selenoprotein F/M	PFAM	PF08806	Sep15_SelM	coord: 90..162 e-value: 1.3E-24 score: 86.1
IPR038219	Selenoprotein F/M superfamily	GENE3D	G3DSA:3.40.30.50		coord: 89..162 e-value: 2.4E-23 score: 84.2
None	No IPR available	PANTHER	PTHR13077:SF10	SUBFAMILY NOT NAMED	coord: 13..166
None	No IPR available	PANTHER	PTHR13077	FAMILY NOT NAMED	coord: 13..166
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 73..166

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18916	Cla007034	Watermelon (97103) v1	carwmB0765
Carg18916	Csa6G087180	Cucumber (Chinese Long) v2	carcuB0786
Carg18916	MELO3C022425	Melon (DHL92) v3.5.1	carmeB0761
Carg18916	ClCG06G001100	Watermelon (Charleston Gray)	carwcgB0742
Carg18916	CSPI06G06700	Wild cucumber (PI 183967)	carcpiB0804
Carg18916	CmaCh17G006180	Cucurbita maxima (Rimu)	carcmaB1063
Carg18916	CmoCh17G006020	Cucurbita moschata (Rifu)	carcmoB1037
Carg18916	Lsi09G018280	Bottle gourd (USVL1VR-Ls)	carlsiB703
Carg18916	Cp4.1LG12g09780	Cucurbita pepo (Zucchini)	carcpeB1075
Carg18916	CsGy6G006710	Cucumber (Gy14) v2	carcgybB0763
Carg18916	MELO3C022425.2	Melon (DHL92) v3.6.1	carmedB0775
Carg18916	CsaV3_6G007030	Cucumber (Chinese Long) v3	carcucB0807
Carg18916	Cla97C06G110370	Watermelon (97103) v2	carwmbB0800

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None