Cla97C06G110370 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G110370
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	15 kDa selenoprotein
Location	Cla97Chr06 : 990885 .. 994289 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCTTCTCCCTGGGGTAAGGAATCCCGCTACGGCGGTGACAATAGCGGTAGCGACGACGGCGATCATTTTCATCGCCTTAATGCCGCTGGCTTCGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCACACTTTATCTGAATATATCAAAGATCAAGGTGATGCGTTTAATTCACTGGTTTATTTTACACTAATTCTTGATTCGGTTTTGAATTTATATCTTTATTACTGCATTTCTTCCGTTTTCGTGGCTATTTCTCGTGAATTAGCAGTATCGTAATGGATTTTGTTCGCTTGTTTTCTTGATTCTCTCCGTTCTTATGAGCGATTGATTGTTCGTCTTGTGGTTGGTTTTGTTTACGTATCTTTTTTGCTTGATTTGGATTTTGGATTTCCGGATTACTTTGTTGTAGTCTGAGGTGTAAAGTGTTGGTTTTAATTTAGATAACTTCAATCAATTTCTTAGCATTATGGATAGAGTTTGCTAATATTAGTTCTCATTTTGTTCAAAGATTCGATAGTGATGAGTTCAGAGACAGACTTAAGGTCCTACTTCTTTGACTGTGTGGGAATTTGTTTGGGAAGATGGTTCCCGAAATACTGATGTAATAAATCTTTTTTTTTTTTTTTCAAAAAATTACAAAACTGTTTCTATGGGAAGAAAAAAGTCCTTAACTTTTTGAAGCGATAGATCATCTTGTTCCTCCTGCGATTTGTTGATTGTGTTTTTCAGAAATCATGTATCATGCCTTTCTGGTAAGTCGTGATTTGAATGCAATTAGTGATTGTTAGTGCTATTCCTTTTGGAACTATTTTGAGAAACAAGTGTTTGTATATTTAAAATAATGATTTGTGTAAACATCTTCAACTGTTTTTAAAAAGTTGTACAATTGCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATACATCTATTTCATTTGGAAACAAGAAATAGGTTGGAGATGTTGAGTTTAGATAGCATATTGCCTTTTAAGTATTGTAGATTAAGAATTTGTAAGTTTACAAATGGGTTTTACGAAACATTTCAAAAGATGTAATTCCAAATGAAGAATTCAGTTATTATTGCACTGGCAACTCTGGCAACACTGGATTTGTGAAGGATTGTTAATGACTTCAAATAGTTTATATCCAAAAGAAGAAAAGAATTGATGTTATGCAAAATCTGCAACCATTTTGTGTCAGCTTATCTAATAGTTTTGAAATGCAGTGTTTTTAATATTACACACTAACCTCACGCCCAGATTTGTACTGCAGAATTAGTGACAGACTGTTTGAAGTGTTGTACGGAGGATTCTGATGATGCCACGAGTAAGGTACACAAAATGGCATAAATGTGCTGATTTCTTCAACGGGAATCAATGAAATCATGTTTCTCCCTCAAAAATTTCATTAACTGACCATTCCATTTGTGATTAATGTATAACACCCCTAAACGGAATGCTTGTACATCCTTGTGGTAGATTTGTCAATGAAAAACACATTAGTTCAACAGATGTACTTATCACAGCTATGGTCCAAAACAAGGTTTCAGTAAACGAAACTAACTCATCTTTAGAAAAAGGTGATTCATGTGTTTGCAAGGCATTTATCAATGCATATCACAACCTGACAACCCTGTTGAAAGTGGGGGGTTGGAAATTCTTGGCTTATTGTTGAGCTAGTGTAACCTATTAATTCACGTTATTTTGTAAATTACCATATGTACATCCATAGTATTTTAATATTCTTTTATCAGTGTTTCAAACTTCTGGACAGATTTTCCGCACTCAATATGAGGCAATTACTTATTCCAAGAGACTAATTGTTTCCCTTTACCATTTAGCCCTATACCACTCCATGGTGTTACAGGGACAACGCTCTATGATAAAGGAGATCTTGATGAACTCCCCTTTTCGAGATGAAGGAGGAGTGTGGTAGCAAGCTTGCTCCTTCGTATCTTGTGGGATTTGTAGCTCAAGGGGAATAGTAGGATCTTTAGAGGGGCTAAGAGGTCCATTACTTGGACTTGTAACTATTAGTTTGGTCTTATAACTGTTTTATTGGTGTCTATTTTGTAGGTTGTTAAGGACTCCTTTTGGGAACTTGTTTTTTGTATGCCCTGATATATTCTTTCATTTATCTTTCATGAAAGCTTGGTTACCAGGAAAGAAAAAAGAAAAAAAAAAACCATTAGAATTCCAAGAAACGTTCTTGAAAATTCTGCTATTGAGCTCACACCAAAGATTACAGAAAAAAGCTTGGTTGATGGCTAGACATAAAGTCTTCTTAAAACCATGAAAAGTATGTCCCACAAAAACCAAAGCCAAAATGTCATAAATAGTTCCAGGGAGAAATATCCGATATACATCCAGAATTTAGAGCCTCTCCGAGAGATTTTTGAGTTCCATTCTCACTCAAATTCAGCATAACTATTTGCATTTTTGTCTTTTCATTTCATTTCGACTAAAGATGAAAGCCAATTAACTAAGTTCCACTGACTGCAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGAAAAGGATCAATTCCCTTCAGTTAAGGTTCAGTATATCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATCAGGTAACTTCTACTTTCCCAATTTACTTGTTATAACACTGTCTGGAAGAATGCTTGCATCCGTAACTTAGTCAGAGTACATATAATTAATCTTAGGGAGTGCATGGAGCACTAAGTTGAGTTTTAAAGTGTGAAGTTAATATATTGGAGTTAGGAAGTTTGTGCTTGGGGTCTAGAGTTATAATAACGGAGTTCCTCAATAAATGTGCAAAAGAGAGAGAGAGGAAGATGAAGTTTTTTGATAAATGTGTAAACTTCAATTGTGAACCGTATTGAAGGTGGTGGTGTTGAGTTATTTAACACTGATTTATGAAGTCAGTGGGCCAAACACCCCCTTTAAAGCAAAATCAAGTGATGAAGAATATGTTTGAGGAGGTTAAGATGGTGTATATAGCGATATAGTTAATGGGTAATGACCTTTGTCCATGCCAAAGCGAGCATAGCTCAACTAGCATACGAGTATGCTAATGATGACCATGAGATCTGTGGTTCGAATCCTCTACCCCCAATTGTACTAAAAAAAGACTATTGTCCATTGATGATAGTCTTGATATAAAAAAATGTTGATATTTTATATTTTTAATTTTTGCAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

mRNA sequence

ATGCAGCTTCTCCCTGGGGTAAGGAATCCCGCTACGGCGGTGACAATAGCGGTAGCGACGACGGCGATCATTTTCATCGCCTTAATGCCGCTGGCTTCGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCACACTTTATCTGAATATATCAAAGATCAAGAATTAGTGACAGACTGTTTGAAGTGTTGTACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGAAAAGGATCAATTCCCTTCAGTTAAGGTTCAGTATATCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATCAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

Coding sequence (CDS)

ATGCAGCTTCTCCCTGGGGTAAGGAATCCCGCTACGGCGGTGACAATAGCGGTAGCGACGACGGCGATCATTTTCATCGCCTTAATGCCGCTGGCTTCGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCACACTTTATCTGAATATATCAAAGATCAAGAATTAGTGACAGACTGTTTGAAGTGTTGTACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGAAAAGGATCAATTCCCTTCAGTTAAGGTTCAGTATATCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATCAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

Protein sequence

MQLLPGVRNPATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTLSEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI

Homology

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BLAST of Cla97C06G110370 vs. NCBI nr
Match: XP_008460012.1 (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 314.7 bits (805), Expect = 1.9e-82
Identity = 155/171 (90.64%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 1   MQLLPGVRNPATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGV NPATAVT+ +A  AIIFI+ MPLA SKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  SEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           +EYIKDQELV DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVKVQY FNSPPKLILLDDEGQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

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BLAST of Cla97C06G110370 vs. NCBI nr
Match: XP_004140597.1 (PREDICTED: 15 kDa selenoprotein [Cucumis sativus] >KGN46338.1 hypothetical protein Csa_6G087180 [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 4.8e-81
Identity = 153/171 (89.47%), Postives = 160/171 (93.57%), Query Frame = 0


Query: 1   MQLLPGVRNPATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGV N A AVT+A+  TAIIFI+ MPL  SKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  SEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           +EYIKDQELV+DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIED+KDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVKVQY FNSPPKLILLDD+GQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

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BLAST of Cla97C06G110370 vs. NCBI nr
Match: XP_022954272.1 (selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.8 bits (782), Expect = 9.0e-80
Identity = 156/172 (90.70%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   MQLLPGVRNPATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV+NPAT VT+A   TAIIFIA MPLA SKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTMA---TAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  SEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           +EYIKDQELVTDCLKCCTEDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE+EKDQFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVK-RSSAI 172
           SV VQY FNSPPKLILLDDEGQHKESIRIDNWKREHILQFL+EKVK RSSAI
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

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BLAST of Cla97C06G110370 vs. NCBI nr
Match: XP_023004122.1 (selenoprotein F-like [Cucurbita maxima])

HSP 1 Score: 303.5 bits (776), Expect = 4.5e-79
Identity = 151/171 (88.30%), Postives = 157/171 (91.81%), Query Frame = 0


Query: 1   MQLLPGVRNPATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQL   V+ PAT V +A  T AIIFIA MPLA SKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  SEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           +EYIKDQELV DCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+EKD+FP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVKVQYIFNSPPKL LLDDEGQHKESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 121 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

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BLAST of Cla97C06G110370 vs. NCBI nr
Match: XP_022992419.1 (selenoprotein F-like [Cucurbita maxima])

HSP 1 Score: 302.4 bits (773), Expect = 1.0e-78
Identity = 155/172 (90.12%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   MQLLPGVRNPATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV+NPAT VT+A   TAIIFIA MPLA SKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTMA---TAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  SEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           +EYIKDQELVTDCLKCCTEDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE+EK QFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKYQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVK-RSSAI 172
           SV VQY FNSPPKLILLDDEGQHKESIRIDNWKREHILQFL+EKVK RSSAI
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

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BLAST of Cla97C06G110370 vs. TrEMBL
Match: tr|A0A1S3CC00|A0A1S3CC00_CUCME (15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.3e-82
Identity = 155/171 (90.64%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 1   MQLLPGVRNPATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGV NPATAVT+ +A  AIIFI+ MPLA SKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  SEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           +EYIKDQELV DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVKVQY FNSPPKLILLDDEGQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

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BLAST of Cla97C06G110370 vs. TrEMBL
Match: tr|A0A0A0KA30|A0A0A0KA30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 3.2e-81
Identity = 153/171 (89.47%), Postives = 160/171 (93.57%), Query Frame = 0


Query: 1   MQLLPGVRNPATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGV N A AVT+A+  TAIIFI+ MPL  SKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  SEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           +EYIKDQELV+DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIED+KDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 172
           SVKVQY FNSPPKLILLDD+GQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

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BLAST of Cla97C06G110370 vs. TrEMBL
Match: tr|B9IQU6|B9IQU6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G112100v3 PE=4 SV=2)

HSP 1 Score: 268.1 bits (684), Expect = 1.4e-68
Identity = 123/149 (82.55%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 23  IIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTLSEYIKDQELVTDCLKCCTEDSD 82
           + F  ++P+  SKEQLSSRECEDLGFTGLALCSDC+TL+EY+K+QELV+DCLKCCTEDSD
Sbjct: 11  LFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 83  DATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFPSVKVQYIFNSPPKLILLDDEGQ 142
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIE+EKDQFP+VKVQY+FNSPPKLI+LDDEGQ
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGQ 130

Query: 143 HKESIRIDNWKREHILQFLQEKVKRSSAI 172
           HKE+IRIDNWKREH+LQFLQEKVK +SAI
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPASAI 159

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BLAST of Cla97C06G110370 vs. TrEMBL
Match: tr|A0A067LJ32|A0A067LJ32_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05711 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 5.2e-68
Identity = 121/143 (84.62%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 28  LMPLASSKEQLSSRECEDLGFTGLALCSDCHTLSEYIKDQELVTDCLKCCTEDSDDATSK 87
           ++P+ASSKEQLSSRECEDLGFTGLALCSDC+T +EY+K+QELV+DCLKCCTEDSDD+ SK
Sbjct: 16  ILPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLKCCTEDSDDSLSK 75

Query: 88  ITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFPSVKVQYIFNSPPKLILLDDEGQHKESI 147
           ITYSGA+LEVCMRKLVFYPEIVGFIE+EKDQFP+VKVQY+FNSPPKLILLDDEGQHKE++
Sbjct: 76  ITYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLILLDDEGQHKETV 135

Query: 148 RIDNWKREHILQFLQEKVKRSSA 171
           RIDNWKREH+LQFL+EKVK +S+
Sbjct: 136 RIDNWKREHLLQFLREKVKHASS 158

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BLAST of Cla97C06G110370 vs. TrEMBL
Match: tr|A0A2P2KE64|A0A2P2KE64_RHIMU (15 kDa selenoprotein-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.2e-66
Identity = 121/147 (82.31%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 27  ALMPL---ASSKEQLSSRECEDLGFTGLALCSDCHTLSEYIKDQELVTDCLKCCTEDSDD 86
           A++P+   +SSKEQLSSRECEDLGFTGLALCSDCHT SEY+K QELV+DCL CCTEDSDD
Sbjct: 22  AILPMPNVSSSKEQLSSRECEDLGFTGLALCSDCHTFSEYVKSQELVSDCLNCCTEDSDD 81

Query: 87  ATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFPSVKVQYIFNSPPKLILLDDEGQH 146
           + SKITYSGA+LEVCMRKLVFYPEIVGFIE+EKDQFP+VKVQY+FNSPPKLI+LD+EGQH
Sbjct: 82  SMSKITYSGAILEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLIMLDEEGQH 141

Query: 147 KESIRIDNWKREHILQFLQEKVKRSSA 171
           KE++RIDNWKREH+LQFL+EKVK  SA
Sbjct: 142 KETVRIDNWKREHMLQFLREKVKPKSA 168

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BLAST of Cla97C06G110370 vs. Swiss-Prot
Match: sp|Q802F3|SEP15_DANRE (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 9.3e-20
Identity = 53/141 (37.59%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 28  LMPLASSKEQLSSRECEDLGFTGLALCSDCHTLSEYIKDQELVTDCLKCCTEDSDDATSK 87
           L  LAS   +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K
Sbjct: 14  LQGLASYGAELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRK 73

Query: 88  ITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPSVKVQYIFNSPPKLILLDDEGQHKES 147
           + Y GA+LEVC  KL  +P++  F+  +K + F  ++++Y+  S P L LLDD G   E 
Sbjct: 74  L-YPGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEE 133

Query: 148 IRIDNWKREHILQFLQEKVKR 168
           + I  W  + + +FL EK++R
Sbjct: 134 LSILKWNTDSVEEFLSEKLER 152

[Close]

BLAST of Cla97C06G110370 vs. Swiss-Prot
Match: sp|A8YXY3|SEP15_BOVIN (Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-19
Identity = 55/163 (33.74%), Postives = 89/163 (54.60%), Query Frame = 0


Query: 6   GVRNPATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTLSEYIK 65
           G   PA  + + +AT       L  +++   + SS  C +LGF+   LCS C  L ++  
Sbjct: 7   GWLGPAFGLRLLLAT------VLQTVSALGAEFSSESCRELGFSSNLLCSSCDLLGQF-N 66

Query: 66  DQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPSVKV 125
             +L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  +++
Sbjct: 67  LLQLDPDCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFKGLQI 126

Query: 126 QYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKR 168
           +Y+  S P L LLDD G   E + I  W  + + +FL EK++R
Sbjct: 127 KYVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLER 161

[Close]

BLAST of Cla97C06G110370 vs. Swiss-Prot
Match: sp|A1Z623|SEP15_PIG (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-19
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = 0


Query: 6   GVRNPATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTLSEYIK 65
           G   PA  + + +AT      AL  +++   + SS  C +LGF+   LC  C  L ++  
Sbjct: 7   GWLGPALGLRLLLAT------ALQMVSAFGAEFSSESCRELGFSSNLLCGSCDLLGQFDL 66

Query: 66  DQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPSVKV 125
            Q L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  +++
Sbjct: 67  LQ-LDPDCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQI 126

Query: 126 QYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKR 168
           +Y+  S P L LLDD G   E + I  W  + + +FL EK++R
Sbjct: 127 KYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLQR 161

[Close]

BLAST of Cla97C06G110370 vs. Swiss-Prot
Match: sp|O60613|SEP15_HUMAN (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4)

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-18
Identity = 52/159 (32.70%), Postives = 87/159 (54.72%), Query Frame = 0


Query: 10  PATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTLSEYIKDQEL 69
           P+  +  A     ++   L  +++   + SS  C +LGF+   LCS C  L ++    +L
Sbjct: 8   PSGCLVPAFGLRLLLATVLQAVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQF-NLLQL 67

Query: 70  VTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPSVKVQYIF 129
             DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  ++++Y+ 
Sbjct: 68  DPDCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVR 127

Query: 130 NSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKR 168
            S P L LLDD G   E + I  W  + + +FL EK++R
Sbjct: 128 GSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLER 164

[Close]

BLAST of Cla97C06G110370 vs. Swiss-Prot
Match: sp|Q923V8|SEP15_RAT (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3)

HSP 1 Score: 91.7 bits (226), Expect = 8.7e-18
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 0


Query: 6   GVRNPATAVTIAVATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTLSEYIK 65
           G   PA  + + +AT      A   +++   + SS  C +LGF+   LCS C  L ++  
Sbjct: 7   GWLRPALGLRLLLAT------AFQAVSALGAEFSSEACRELGFSSNLLCSSCDLLGQF-N 66

Query: 66  DQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPSVKV 125
              L   C  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  +++
Sbjct: 67  LLPLDPVCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQI 126

Query: 126 QYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKR 168
           +Y+  S P L LLDD G   E + I  W  + + +FL EK++R
Sbjct: 127 KYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLER 161

[Close]

BLAST of Cla97C06G110370 vs. TAIR10
Match: AT1G05720.1 (selenoprotein family protein)

HSP 1 Score: 251.9 bits (642), Expect = 2.8e-67
Identity = 113/153 (73.86%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 18  VATTAIIFIALMPLASSKEQLSSRECEDLGFTGLALCSDCHTLSEYIKDQELVTDCLKCC 77
           V  +A++ + L    S+KEQLS++ECEDLGF+GLALCSDCH+LSEY+KDQELV+DCLKCC
Sbjct: 10  VVLSAMMILILASTISAKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDCLKCC 69

Query: 78  TEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFPSVKVQYIFNSPPKLILL 137
            +DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIE+EK++FPSVKVQYIFNSPPKLI+L
Sbjct: 70  ADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPKLIML 129

Query: 138 DDEGQHKESIRIDNWKREHILQFLQEKVKRSSA 171
           D++G+HKESIRIDNWKREH+LQ+++EKVK ++A
Sbjct: 130 DEDGEHKESIRIDNWKREHLLQYMREKVKPTAA 162

The following BLAST results are available for this feature:

BLAST of Cla97C06G110370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460012.1	1.9e-82	90.64	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]
XP_004140597.1	4.8e-81	89.47	PREDICTED: 15 kDa selenoprotein [Cucumis sativus] >KGN46338.1 hypothetical prote...	[more]
XP_022954272.1	9.0e-80	90.70	selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [...	[more]
XP_023004122.1	4.5e-79	88.30	selenoprotein F-like [Cucurbita maxima]	[more]
XP_022992419.1	1.0e-78	90.12	selenoprotein F-like [Cucurbita maxima]	[more]

BLAST of Cla97C06G110370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CC00\|A0A1S3CC00_CUCME	1.3e-82	90.64	15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=4 SV=1	[more]
tr\|A0A0A0KA30\|A0A0A0KA30_CUCSA	3.2e-81	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 PE=4 SV=1	[more]
tr\|B9IQU6\|B9IQU6_POPTR	1.4e-68	82.55	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G112100v3 PE=...	[more]
tr\|A0A067LJ32\|A0A067LJ32_JATCU	5.2e-68	84.62	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05711 PE=4 SV=1	[more]
tr\|A0A2P2KE64\|A0A2P2KE64_RHIMU	2.2e-66	82.31	15 kDa selenoprotein-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of Cla97C06G110370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q802F3\|SEP15_DANRE	9.3e-20	37.59	Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2	[more]
sp\|A8YXY3\|SEP15_BOVIN	2.7e-19	33.74	Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2	[more]
sp\|A1Z623\|SEP15_PIG	3.5e-19	34.36	Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2	[more]
sp\|O60613\|SEP15_HUMAN	1.0e-18	32.70	Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4	[more]
sp\|Q923V8\|SEP15_RAT	8.7e-18	33.13	Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3	[more]

BLAST of Cla97C06G110370 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05720.1	2.8e-67	73.86	selenoprotein family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR014912	Sep15_SelM
IPR038219	Sep15/SelM_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G110370.1	Cla97C06G110370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038219	Selenoprotein F/M superfamily	GENE3D	G3DSA:3.40.30.50		coord: 92..165 e-value: 4.2E-24 score: 86.7
IPR014912	Selenoprotein F/M	PFAM	PF08806	Sep15_SelM	coord: 93..165 e-value: 1.4E-25 score: 89.2
None	No IPR available	PANTHER	PTHR13077	FAMILY NOT NAMED	coord: 18..170
None	No IPR available	PANTHER	PTHR13077:SF10	SUBFAMILY NOT NAMED	coord: 18..170
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 76..167

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G110370	Cla007034	Watermelon (97103) v1	wmwmbB407
Cla97C06G110370	Csa6G087180	Cucumber (Chinese Long) v2	cuwmbB468
Cla97C06G110370	MELO3C022425	Melon (DHL92) v3.5.1	mewmbB127
Cla97C06G110370	ClCG06G001100	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G110370	CSPI06G06700	Wild cucumber (PI 183967)	cpiwmbB495
Cla97C06G110370	Cucsa.348570	Cucumber (Gy14) v1	cgywmbB596
Cla97C06G110370	CmaCh08G001850	Cucurbita maxima (Rimu)	cmawmbB925
Cla97C06G110370	CmaCh17G006180	Cucurbita maxima (Rimu)	cmawmbB372
Cla97C06G110370	CmoCh17G006020	Cucurbita moschata (Rifu)	cmowmbB356
Cla97C06G110370	CmoCh08G001900	Cucurbita moschata (Rifu)	cmowmbB900
Cla97C06G110370	Lsi09G018280	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G110370	CsGy6G006710	Cucumber (Gy14) v2	cgybwmbB446
Cla97C06G110370	MELO3C022425.2	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G110370	Carg05014	Silver-seed gourd	carwmbB0079
Cla97C06G110370	Carg18916	Silver-seed gourd	carwmbB0800
Cla97C06G110370	CsaV3_6G007030	Cucumber (Chinese Long) v3	cucwmbB487
Cla97C06G110370	Bhi12G002190	Wax gourd	wgowmbB098

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None