CsaV3_6G007030 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G007030
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	15 kDa selenoprotein
Location	chr6 : 5743447 .. 5755361 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATGTAGTTAAAAATTGGATTAAGGAAAATTGACCCAATGGGTCAAAATAAAATAACGAAAAGGGCTGTTTCTTCAAATTTGAAGTTAAAAATTCGTCTTTTGTCGAGAGAGAGAGTTTTCCAATCGTCCGTAGGCTTCGCCTTTTCACCCTCAGTCGCCGGCGACAACAGAGATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGTTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGGTGACGCGTTCAATTCAGTGGTGTTTCTTACACTAATTCTTGATTCGGTTTTGAATTTACATCTTTATCACTGCATTTCTTCCGTTCTCGTAAATTAGCAGCATCTTATTGGATTTTGTTCGCTTGTTTTTTTTATTGAACAATTGATTGGTCGTCTTGTGGGTTGTTTTATTTGTGTATCTTTTTTGCTTGATTTGGATTTTGGATTTCTGGGTTACTTGATTATAGTCTGACGTGTGAAGTGTTGGTTTTAATTTCGATATTTTCAATCAATTTCTTAGTATTGTGGATAGAGTTTGTTCATATTAGTTCATATTTTGTTCAAAGAGACGATAGTGATGAGTTCAGTGATAGAGTTTAGGTCCTACTACTTTGATCGTATAGGAATTTGTTAGGGAAGATGGTTCCAGAAATTCTGATGTAATAACTCACTCTTTTTTCAAAAGATTACAAAATTGTTTCTATGGGAAGAAAAAAGTTCTCAACTTTTAAAAGGGATAGACTTATCTTGTTCCTCATGCAATTTGTCGATTGTGTTTTTCAGAAAACACGTATCGTGTCTTTCTGATAAGTCGTAATTTGAATGCAATTAGTGATTGTTAGTGCTATTCCTTTTGGCAACTTCTTTTTTTCGCAATGTCCTTTATTCACAAGTGGAAATGGCTTCATGACTTTCCCACACTATTTTGAGAAACAACTGTTTGTAATTTTAAAATAATGTTTTGTGAAAATATCTTCAACTGTTTTTAGAAAGTGGTAAACTTATTTTTTCTAGTTTGTTTTCACATACATCTATTTCTTTTAGTTAAGTTGAAGATATTAGACACAATCCTCATGCCCAGATTCGTACTGCAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGGTACGTCATAAACATGTTGATTTCTTCAAGGGGAATCAATGAAATCTTGTTTCTCCCCCAAAAATTTAATTATCTGACTATTCCATTTGTTTTTATTAACATATGACACTACTAAACTGCATGCTTGTACATCCCTTTGGTAGATTTGTCAATGTAAAACACATTAGTTCAAGAGATATAATTGTCACGGCTATGCATCAAAACAAGGTTTCAGTAAACAAGAGAAACTAACTCATCTTTAGAAAAGGATAATTTAAGGAATGTGCAACACTTTATCAATGCATATCACAACCCTATTGAAAGTGGGAGAGTTTAGAAATACTTGGCTCATCATTGAACTCTAGTGTACCCTATTCCATATTGAGTGTACATATCCATAGTATCATATTCTTTTATCAGTGTGTCAAACCTCCAGACAGATTCTCCAAATTTCCACACTCGATAGGAGACGATTACTTATTATAGTATTTTCCCTCTTCCATTTAGCTCTATACCACTCCATGGTGTTACAGCGACCACTGCTTTTTATCCTCATGAACTCCCCTTTTTGAGATGGAGTATTGTAGCATGCTTGCTCCTTTGGTATCTCGTGGGAAGTGTATCTCAAGAAGAATAGTGGGATATGTATCTCGAGAAGAATAGTAAGACTTTTAGGGGAGCTGAGATGTCCGTTACTTGGACTTCTTATAACTATTAGTTTAGTCTTATTCTTTTTCTTATTAGTGTCTATTCTGTAAGTTGTTAAGGAGTCCTTTTGGGAGGCTTGGTTTTTTTTGTCTCAATATGTTCTTTCATTTATCTTCACGAAAGCTTGGTTTCCAAAAATACCATTAAAAGTCCAAGAAACGTTCTTTCAAATCCTGCTAGTGAGCTCACACCAAATATTCCAGAAAAATGCTTTGTTGATGGCTGGATAAAGTCCTCTTATAACAAAAAGTATGCCCCCACAAGAACCAAAGCCAATATGTCATAATATTACCAGGGAGAAATGTCCGATATACATCTAGAATTTAGAGCTTCTCCAAGAGATTGAGTATTCAGTTCCACCCTTATTCAAATTCAGTACTCTTTTGTTGATTGTATTTCATAACTAATTTGCTTATTAACGATGAAATCCAATTCACTAAGTTCACTGACTGCAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGTAACTTCTACTTTTTCAAGTCACTTAGTTATAATAATAATCTCTAGAAGAATGTTTAGAGTGATGAGTTAGTCAGTGTACATATAACTAATCTTAGGAGTTGTAAAGCTTTGAGTTAAGCTGAGTTGAGTTTTGAAATCTAAAGTTAATAGGTCGGAGTTCGAGAGTTTGTGTTTGGAGTGTAGAGTTATAAAATGAAGTTTTTCGATAAATGTGCAAACTTCAATTATGAGTAGTTGATATAACATCAACTTATGAAGTCGATGGGCCAAGCACTCCTTTATATACGAAATGAATGAAGATTGTGTTTGAGGAGGTTGAGATGCTGAATATAGCGATATAGAATTTACTTTAGCTTAATGATAACCTCGATGTATAAAAACGTTTGATATTTTATTATTTTTTAAAACTTTTGCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAAGGTTCTCTCACCTTTTTCTTTTTTTTTTTTTAATTTTAAATTTTAGGTTACATCTCTTAATCAATGTAAAAAACTTGTTGAATTTGAATGAAACTATTATCAGCCAGAAAAAGAAGAAAGAAAGAAAAAGAATTGAGGTGAGTGAACACTGGATTTTGTGAATTTCAAGGTTAGCAGTGGAAATAGTTCTGATTTCCTTTTGTCTAAATCTTTTACTGGAGGAAGACACACCTTTCATCCGGGAAACCAATACATTTTGAACGTAATGGAATGAATTTGTCGTATAACGTAATTCTAGATCTATGTTTGGACTGACCGTCTTGGAACCAATTTGCAATACCAAACTTACTATGTTTTCATGATTCTATTTTCCTGCGCTCATTTTAACCTCTTAAATTTTCATGCTGATTATTGTAAAATTTTAAATTTATTTGGTTATGGAAATTTTGTTAGAGAAAATTTTGTTTATGGAGATTTAGAACTTTATCTTTGAGTGAAAGTTATTA

mRNA sequence

ATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGTTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

Coding sequence (CDS)

ATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGTTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

Protein sequence

MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI

Homology

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BLAST of CsaV3_6G007030 vs. NCBI nr
Match: XP_004140597.1 (PREDICTED: 15 kDa selenoprotein [Cucumis sativus] >KGN46338.1 hypothetical protein Csa_6G087180 [Cucumis sativus])

HSP 1 Score: 347.8 bits (891), Expect = 2.1e-92
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

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BLAST of CsaV3_6G007030 vs. NCBI nr
Match: XP_008460012.1 (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 332.8 bits (852), Expect = 6.9e-88
Identity = 162/171 (94.74%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWN A AVTV L A AIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+DKDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

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BLAST of CsaV3_6G007030 vs. NCBI nr
Match: XP_022954272.1 (selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.8 bits (769), Expect = 2.9e-78
Identity = 151/172 (87.79%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV N A  VT+   ATAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 172
           SV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

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BLAST of CsaV3_6G007030 vs. NCBI nr
Match: XP_022992419.1 (selenoprotein F-like [Cucurbita maxima])

HSP 1 Score: 297.4 bits (760), Expect = 3.2e-77
Identity = 150/172 (87.21%), Postives = 158/172 (91.86%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV N A  VT+   ATAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE++K QFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKYQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 172
           SV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

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BLAST of CsaV3_6G007030 vs. NCBI nr
Match: XP_022960129.1 (selenoprotein F-like [Cucurbita moschata])

HSP 1 Score: 294.3 bits (752), Expect = 2.7e-76
Identity = 143/171 (83.63%), Postives = 153/171 (89.47%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQL   V   A  V +A  A AIIF++SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWAAAIIFMASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE++KD+FP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVK+QY FNSPPKL LLDD+GQHKESIRIDNWKREH LQFLQ+KVK SSAI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

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BLAST of CsaV3_6G007030 vs. TAIR10
Match: AT1G05720.1 (selenoprotein family protein)

HSP 1 Score: 247.7 bits (631), Expect = 5.3e-66
Identity = 114/159 (71.70%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 12  IAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVS 71
           +A  V L+A  I+ ++S   + +KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELVS
Sbjct: 6   MAKMVVLSAMMILILAS--TISAKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVS 65

Query: 72  DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSP 131
           DCLKCCA+DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIE++K++FPSVKVQY FNSP
Sbjct: 66  DCLKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSP 125

Query: 132 PKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSA 171
           PKLI+LD+ G+HKESIRIDNWKREH LQ+++EKVK ++A
Sbjct: 126 PKLIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAA 162

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BLAST of CsaV3_6G007030 vs. Swiss-Prot
Match: sp|A1Z623|SEP15_PIG (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-19
Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 0


Query: 5   PGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYI 64
           PG W         L ATA+  +S+        + SS  C +LGF+   LC  C  L ++ 
Sbjct: 5   PGGWLGPALGLRLLLATALQMVSAF-----GAEFSSESCRELGFSSNLLCGSCDLLGQFD 64

Query: 65  KDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVK 124
             Q L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  DK + F  ++
Sbjct: 65  LLQ-LDPDCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQ 124

Query: 125 VQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKR 168
           ++Y   S P L LLDD G   E + I  W  +   +FL EK++R
Sbjct: 125 IKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLQR 161

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BLAST of CsaV3_6G007030 vs. Swiss-Prot
Match: sp|A8YXY3|SEP15_BOVIN (Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 3.6e-19
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLE 96
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 97  VCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

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BLAST of CsaV3_6G007030 vs. Swiss-Prot
Match: sp|O60613|SEP15_HUMAN (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4)

HSP 1 Score: 95.5 bits (236), Expect = 6.1e-19
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLE 96
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 35  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 94

Query: 97  VCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 95  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 154

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 155 SVEEFLSEKLER 164

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BLAST of CsaV3_6G007030 vs. Swiss-Prot
Match: sp|Q802F3|SEP15_DANRE (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-18
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLE 96
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 97  VCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 143 SVEEFLSEKLER 152

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BLAST of CsaV3_6G007030 vs. Swiss-Prot
Match: sp|Q923V8|SEP15_RAT (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 54/151 (35.76%), Postives = 81/151 (53.64%), Query Frame = 0


Query: 18  LTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCC 77
           L ATA   +S++       + SS  C +LGF+   LCS C  L ++     L   C  CC
Sbjct: 18  LLATAFQAVSAL-----GAEFSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCC 77

Query: 78  AEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLIL 137
            E++   T K+ Y+GA+LEVC  KL  +P++  F+  DK + F  ++++Y   S P L L
Sbjct: 78  QEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKL 137

Query: 138 LDDKGQHKESIRIDNWKREHFLQFLQEKVKR 168
           LDD G   E + I  W  +   +FL EK++R
Sbjct: 138 LDDNGNIAEELSILKWNTDSVEEFLSEKLER 161

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BLAST of CsaV3_6G007030 vs. TrEMBL
Match: tr|A0A0A0KA30|A0A0A0KA30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 1.4e-92
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CsaV3_6G007030 vs. TrEMBL
Match: tr|A0A1S3CC00|A0A1S3CC00_CUCME (15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 4.6e-88
Identity = 162/171 (94.74%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWN A AVTV L A AIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+DKDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CsaV3_6G007030 vs. TrEMBL
Match: tr|B9IQU6|B9IQU6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G112100v3 PE=4 SV=2)

HSP 1 Score: 265.4 bits (677), Expect = 9.0e-68
Identity = 123/149 (82.55%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 23  IIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSD 82
           + F   +P+V SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELVSDCLKCC EDSD
Sbjct: 11  LFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 83  DATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQ 142
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIE++KDQFP+VKVQY FNSPPKLI+LDD+GQ
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGQ 130

Query: 143 HKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           HKE+IRIDNWKREH LQFLQEKVK +SAI
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPASAI 159

[Close]

BLAST of CsaV3_6G007030 vs. TrEMBL
Match: tr|A0A067LJ32|A0A067LJ32_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05711 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.9e-65
Identity = 123/155 (79.35%), Postives = 139/155 (89.68%), Query Frame = 0


Query: 16  VALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLK 75
           VAL    II    +P+  SKEQLSSRECEDLGFTGLALCSDC+T AEY+K+QELVSDCLK
Sbjct: 8   VALLWVCII----LPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLK 67

Query: 76  CCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLI 135
           CC EDSDD+ SKITYSGA+LEVCMRKLVFYPEIVGFIE++KDQFP+VKVQY FNSPPKLI
Sbjct: 68  CCTEDSDDSLSKITYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLI 127

Query: 136 LLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSA 171
           LLDD+GQHKE++RIDNWKREH LQFL+EKVK +S+
Sbjct: 128 LLDDEGQHKETVRIDNWKREHLLQFLREKVKHASS 158

[Close]

BLAST of CsaV3_6G007030 vs. TrEMBL
Match: tr|A9PBN4|A9PBN4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G126900v3 PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 4.2e-65
Identity = 117/142 (82.39%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 29  MPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKI 88
           +P+V SKEQLSS ECEDLGF+GLALCSDCHT +EY+K+QELVSDCLKCC EDSDD+ SKI
Sbjct: 25  LPIVKSKEQLSSGECEDLGFSGLALCSDCHTFSEYVKNQELVSDCLKCCTEDSDDSISKI 84

Query: 89  TYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIR 148
           TYSGA+LEVCMRKLVFYPEIVGFIE++KDQFP+ KVQY FNSPPKLI+LDDKGQHKE+IR
Sbjct: 85  TYSGAILEVCMRKLVFYPEIVGFIEEEKDQFPTFKVQYLFNSPPKLIMLDDKGQHKETIR 144

Query: 149 IDNWKREHFLQFLQEKVKRSSA 171
           IDNWKREH LQ+L+EKVK +SA
Sbjct: 145 IDNWKREHMLQYLREKVKPTSA 166

The following BLAST results are available for this feature:

BLAST of CsaV3_6G007030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140597.1	2.1e-92	100.00	PREDICTED: 15 kDa selenoprotein [Cucumis sativus] >KGN46338.1 hypothetical prote...	[more]
XP_008460012.1	6.9e-88	94.74	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]
XP_022954272.1	2.9e-78	87.79	selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [...	[more]
XP_022992419.1	3.2e-77	87.21	selenoprotein F-like [Cucurbita maxima]	[more]
XP_022960129.1	2.7e-76	83.63	selenoprotein F-like [Cucurbita moschata]	[more]

BLAST of CsaV3_6G007030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05720.1	5.3e-66	71.70	selenoprotein family protein	[more]

BLAST of CsaV3_6G007030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A1Z623\|SEP15_PIG	2.1e-19	35.37	Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2	[more]
sp\|A8YXY3\|SEP15_BOVIN	3.6e-19	37.88	Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2	[more]
sp\|O60613\|SEP15_HUMAN	6.1e-19	37.88	Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4	[more]
sp\|Q802F3\|SEP15_DANRE	1.0e-18	37.88	Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2	[more]
sp\|Q923V8\|SEP15_RAT	1.5e-17	35.76	Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3	[more]

BLAST of CsaV3_6G007030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KA30\|A0A0A0KA30_CUCSA	1.4e-92	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 PE=4 SV=1	[more]
tr\|A0A1S3CC00\|A0A1S3CC00_CUCME	4.6e-88	94.74	15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=4 SV=1	[more]
tr\|B9IQU6\|B9IQU6_POPTR	9.0e-68	82.55	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G112100v3 PE=...	[more]
tr\|A0A067LJ32\|A0A067LJ32_JATCU	1.9e-65	79.35	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05711 PE=4 SV=1	[more]
tr\|A9PBN4\|A9PBN4_POPTR	4.2e-65	82.39	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G126900v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf
IPR038219	Sep15/SelM_sf
IPR014912	Sep15_SelM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G007030.1	CsaV3_6G007030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014912	Selenoprotein F/M	PFAM	PF08806	Sep15_SelM	coord: 93..165 e-value: 5.3E-24 score: 84.1
IPR038219	Selenoprotein F/M superfamily	GENE3D	G3DSA:3.40.30.50		coord: 92..165 e-value: 7.6E-23 score: 82.6
None	No IPR available	PANTHER	PTHR13077	FAMILY NOT NAMED	coord: 13..170
None	No IPR available	PANTHER	PTHR13077:SF10	SUBFAMILY NOT NAMED	coord: 13..170
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	SSF52833	Thioredoxin-like	coord: 76..167

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G007030	CSPI06G06700	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G007030	Cucsa.348570	Cucumber (Gy14) v1	cgycucB532
CsaV3_6G007030	CmaCh17G006180	Cucurbita maxima (Rimu)	cmacucB0446
CsaV3_6G007030	CmaCh08G001850	Cucurbita maxima (Rimu)	cmacucB1077
CsaV3_6G007030	CmoCh08G001900	Cucurbita moschata (Rifu)	cmocucB1060
CsaV3_6G007030	CmoCh17G006020	Cucurbita moschata (Rifu)	cmocucB0439
CsaV3_6G007030	Cp4.1LG17g10790	Cucurbita pepo (Zucchini)	cpecucB0408
CsaV3_6G007030	CsGy6G006710	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G007030	Carg05014	Silver-seed gourd	carcucB0098
CsaV3_6G007030	Carg18916	Silver-seed gourd	carcucB0807
CsaV3_6G007030	Cla007034	Watermelon (97103) v1	cucwmB562
CsaV3_6G007030	MELO3C022425	Melon (DHL92) v3.5.1	cucmeB444
CsaV3_6G007030	ClCG06G001100	Watermelon (Charleston Gray)	cucwcgB497
CsaV3_6G007030	Lsi09G018280	Bottle gourd (USVL1VR-Ls)	cuclsiB424
CsaV3_6G007030	MELO3C022425.2	Melon (DHL92) v3.6.1	cucmedB435
CsaV3_6G007030	Cla97C06G110370	Watermelon (97103) v2	cucwmbB487
CsaV3_6G007030	Bhi12G002190	Wax gourd	cucwgoB561

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G007030	Wax gourd	cucwgoB568