CmaCh08G001850 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G001850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	15 kDa selenoprotein
Location	Cma_Chr08 : 1039839 .. 1044871 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACAAAGGCTTCAAACATAGCTGCTGATTCAACCTCGACTTTCCCGACTTTTCCACATGGATCTTATCATTTTTCTTTCCAACCCTTTACTTATTTACTTTTTGACTTTTTGACCCGTTACCAAAATTCATATTGAAATCACGTTAGAATCAGGTTAACCAAGCCTTTTGTTGTAGAGAGCGTTATTGTATTTTTTTTTTATTTTATTTAGTCCCTGCACTCTCGATTCTTATAATATTTTGATGTTAATTTTATTTTATTTTTTATTTTCGTAACGAAAATATTGGACACATGACTAATTGAGTATCTTTGTTAATTTTTTTAAAAAAATTTAAGAATATTTTTAAAAAATTTAAAACCACCAAATATTTTTATTAATTTTTCATTAAATAAATTTTCAAATTAATAAATTTTAAATTTATTTTTTTTAACAAAAAACTAATTTTATTAATTAAAAACCCCCAAAAAAGAAAAAAAAGAAATTGATTTAATTTGTTAAAGAGAACGGAAAATAATAATGATATTTTCAGTGAGTTTTCAGATCGTCTGTAGACTTGGCTTCTTCCCCACGGTCGACGGTCGACGGTCGACACAGAGATGCAGCTATTCGCCGATGTAAAGAAGCCCGCTACGGTGGTGGCAATGGCGGCATGGACGGCGGCGATAATTTTTATTGCGTCGATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGAGAATGTGAGGATCTAGGTTTCACTGGCCTCGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGGTGATGCGCTCGATTCACAGATCTCACAGTTTTTCGAAACGCATGATTGATTCGGTTTTGAATTTATTTCTGTATTACTACATCTCCATTTTTCGTGGATATTTATCGTGAATTCGCAGCAGCGTAATGGATTTTGTTCGTTTGTTTTCTCAATTCTCCGCGTTCCTTTTTCTTTTGAACGATTGATTGTTCGCCTTGTGGTTGATTTCGATTATGGATTTATATTGCTTGATTTGGATTTTGGAAACAGGAAATAGGTTGCAAGATGTTGAGTTAAAATAGCCTGTTGCCTTTTAGCATCATAGTTAAACAACTTGCGAGTTTATAATTGAGTTATGCAGAAAAATGTGAAAAAATGTTATAATACCAAATGACAATTCTGGCAACACTGGATCTGTGAAGGCTACATTATGACTTCAAATAGTCTTTATGCAAAATCCAAATGAAGAAAATAACTGATAGTACTCTGAATCTGCAGTTGTCTCGTGTCAGTTTATGTAATGCAATAGTTTTTAAGTGCATTGTTCTTAAAATTACATGCTGTACTCATTTCCAAAGTTGTTCTGCAGAATTAGTGGCAGACTGTTTGAAGTGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGGTACGCAAAATTTTATAGATGTGCTGATATCTCGAGTGTAAGATCCCACATCGGTTGGAGAGGAGAATGAAACATTCTTTATAAAGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAAAACCTTGAGGGAAAGCCCAAAGCGGACAATATCTACTAGAAGTGGACTTGGACTGTTACGTCGAGGCTGAATTTGACCTGCTATTCCATTGTGAATAGTGTATTGTCCATGTGGTAGACATATCGATTGAAAACACATTAATTTAACATAGTATGCAGGATTAACAATTTTTAACTCCATGTAATTATAAAAATTGTGGTTCTAAATAAGGTTTCAGTAAACAATATCTACTAGAGGTGTCATAGTGACCAATTTTATAGGAATTAGACGACTCTATGTAATAGCCTAAGTCCACCTCTAGCCGATATTGTCATTTTTGGGTTTTCTCTTTCGGGCTTCCTTCAAGGTTTTTAAAACGTGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATATTTCGTTTCCCTTTCCAACCGATGCGGGATCTCACAATCCATTCCTCTTCATTTTTAGGTGTTCTCTAGTAAACAATATCTACTGGAGGTGTCATAGTGATCAATTTTATAGGAATTAGACGACTCTATGTAATAGTTCAAGTCCACCTCTAGCAGATATTGTCATTTTTGGGTTTTCTCTTTTGGGCTTCCCTTCAAGGTTTTTAAAACGTGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATATTTTGTTTCCCTTTCCAACCGATGTGGTATCTCACAATCCACTGCCTTTTAGGGCCCAACATCCTCGTTGGTACTTGTTCTCCTCTTCATTTTTGGGTCTTCTCTAGTAAACAATATCTACTAGAGGTGTCATAGTGACCAATTTTATAGGAATTAGACGACTCTATGTAATAGCTCAAGTCCACCTCTAGCAGATATTGTCATTTTTGGGTTTTCTCTTTCGGGCTTCCCTTCAAGGTTTTTAAAACGTGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATATTTTGTTTCCCTTTCCAACCGATGTGGTATCTCACAATCCACTGCCTTTTAGGGCCCAACATCCTCGTTGGTACTTGTTCTCCTCTTCATTTTTGGGTCTTCTCTAGTAAACAATATCTACTAGAGGTGTCATAGTGACCAATTTTATAGGAATTAGACGACTCTATGTAATAGCTCAAGTCCACCTCTAGCAGATATTGTCATTTTTGGGTTTTCTCTTTCGGGCTTCCCTTCAAGGTTTTTAAAACGTGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATATTTCGTTTCCCTTTCCAACCGATGTGGGATCTCACAATCCACTCCCGTTTAGGGCCCAACATCCTCGTTGGTACTTGTTCCCCTCTTCATTTTTGGGTCTTCTCTAGTAAACAATATCTACTAGAGGTGTCATAGTGACCAATTTTATAGGAATTAGACGACTCTATGTAATAGTTCAAGTCCACCTCTAGCAGATATTGTCATTTTTGGGTTTTCTCTTTCGGGCTTCCCTTCAAGGTTTTTAAAGCGTGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATATTTTGTTTCCCTTTCCAACCGATGTGGGATCTCACAATCCACTCCCGTTTAGGGCCCAACATCCTCGTTGGTACTTGTTCCCCTCTTCATTTTTGGGTCTTCTCTAGTAAACAATATCTACTAGAGGTGTCATAGTGACCAATTTTATAGGAATTAGACGACTCTATGTAATAGCTCAAGTCCACCTCTAGCAGATATTGTCATTTTTGGGTTTTCTCTTTCGGGCTTCCCTTCAAGGATTTTAAAACGTGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATATTTCGTTTCCCTTTCCAACCGATGTGGGATCTCACAATCCACTCCCGTTTAGGGCCCAACATCCTCGTTGGTACTTGTTCCCCTCTTCATTTTTGGGTCTTCTCTAGTAAACAATATCTACTAGAGGTGTCATAGTGACCAATTTTATAGGAATTAGACGACTCTATGTAATAGCTCAAGTCTACCTCTAGCAGATATTGTCATTTTTGGGTTTTCTCTTTCGGGCTTCCCTTCAAGGATTTTAAAACGTGTCTGCTAAGGAGAGGTTTCCACACCCTTATAAAGAATATTTCGTTTCCCTCGCCAACCAATGTGGGATCTCACAATCCACTCCCCTTCAGGGCCTAACATCCTCGCTGGTACTTGTTCCCCTCTTCTATTGATGTGGGACCCCCCAATATCAACTAGCGGTGAGCTTGGACTATTACACTCTATTTGCTCAAATATCTTGCAACATACTCCCACTTTTTCCGATTACAGTATCTCAAAAGAAATTTCTGGTTCCAAAATTTTTGTCCACCATGGCTGATGTTTGAGAGATTCCTGGTATACAGCCAGAATAGTAAGCCTCTCAAGAGATTGAATTTTGAGTTCCACCCTTCACCAAATTCAGTACTCTGTTGTTGGTTGTATTTCATAACTAATTTGATTATGTCCATCTTTTCGTTAACTAAACAAAGGATGAAAGCTAATTAACTAAATTCGTTAACTGCAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCAGTTAAGGTTCAATATATCTTCAACTCTCCGCCGAAGCTGACTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGTAACTTCTAAGTGCCCAAAATTTTCCACTAAAATGCTTATGGAGAAGACCCTGTTAAGGTCGTGAATGTTGATGTTTCCTTTTTATGAGAACCAAACTTTTAATAGGGTACAAAAGAAGGCAAAATAAATGCTTAAACAAAAAAGTGAAACTAGAGTCTGAAAAAAGAGCTCTAATCATTTAGAATAAGAGATAAGATATGGTTACAAAATACTTCTGGAGTTGGATAGACCCTCGAAGAGGGAGATTAAATCTAGCCAAAAGCCGCATCTCCCTCCAAGATGTTCCTCTTTATGCCTCTAAAACTCTCTAATTTCTGTTGTAAATGTTGATGTTTGCCCTACTAAACGACTTGTTATCTCGTTTAGAAGAACGCTTGCAAGCATCCATAACATTGAGTTCATATGATATCTTTTAGCGCAAAATCATGGAGAATATGAGTAGTACAGAGATATAAATTTTGCTTTAGCTTCCGGTTAATGATATGTCACATAAGATGATATAAGAAGTTTTTTCTGCTCTTTTCCCCCCCTTTTTTGCAGGATTGATAACTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGATAAGGTTAAGCTATCTTCAGCAATTTAAGGTTTCTCATCTTCCTTGTTTTTTTTTTTTTTTTTTTTCCCTTTTATATCCCTGTAAAAAACTCTTAAAGTCTAATTGTTATATTGTAGTTTTCTTTGATACTGCAATATGTTAGTATCGTATGTTTTTCTGTGTTTGGGTAAATTTTATGTTTAATTTCACA

mRNA sequence

ATGACTTGGCTTCTTCCCCACGGTCGACGGTCGACGGTCGACACAGAGATGCAGCTATTCGCCGATGTAAAGAAGCCCGCTACGGTGGTGGCAATGGCGGCATGGACGGCGGCGATAATTTTTATTGCGTCGATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGAGAATGTGAGGATCTAGGTTTCACTGGCCTCGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGAATTAGTGGCAGACTGTTTGAAGTGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCAGTTAAGGTTCAATATATCTTCAACTCTCCGCCGAAGCTGACTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGATTGATAACTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGATAAGGTTAAGCTATCTTCAGCAATTTAAGGTTTCTCATCTTCCTTGTTTTTTTTTTTTTTTTTTTTCCCTTTTATATCCCTGTAAAAAACTCTTAAAGTCTAATTGTTATATTGTAGTTTTCTTTGATACTGCAATATGTTAGTATCGTATGTTTTTCTGTGTTTGGGTAAATTTTATGTTTAATTTCACA

Coding sequence (CDS)

ATGACTTGGCTTCTTCCCCACGGTCGACGGTCGACGGTCGACACAGAGATGCAGCTATTCGCCGATGTAAAGAAGCCCGCTACGGTGGTGGCAATGGCGGCATGGACGGCGGCGATAATTTTTATTGCGTCGATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGAGAATGTGAGGATCTAGGTTTCACTGGCCTCGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGAATTAGTGGCAGACTGTTTGAAGTGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCAGTTAAGGTTCAATATATCTTCAACTCTCCGCCGAAGCTGACTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGATTGATAACTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGATAAGGTTAAGCTATCTTCAGCAATTTAA

Protein sequence

MTWLLPHGRRSTVDTEMQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI

Homology

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BLAST of CmaCh08G001850 vs. Swiss-Prot
Match: SEP15_BOVIN (15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 3.8e-19
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1


Query: 53  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLE 112
           + SS  C +LGF+   LCS C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 113 VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKRE 172
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 173 HILQFLQDKVK 183
            + +FL +K++
Sbjct: 152 SVEEFLSEKLE 160

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BLAST of CmaCh08G001850 vs. Swiss-Prot
Match: SEP15_HUMAN (15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3)

HSP 1 Score: 95.5 bits (236), Expect = 6.5e-19
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1


Query: 53  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLE 112
           + SS  C +LGF+   LCS C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSEACRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 113 VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKRE 172
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 173 HILQFLQDKVK 183
            + +FL +K++
Sbjct: 152 SVEEFLSEKLE 160

[Close]

BLAST of CmaCh08G001850 vs. Swiss-Prot
Match: SEP15_DANRE (15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 48/131 (36.64%), Postives = 76/131 (58.02%), Query Frame = 1


Query: 53  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLE 112
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 113 VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKRE 172
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 173 HILQFLQDKVK 183
            + +FL +K++
Sbjct: 143 SVEEFLSEKLE 151

[Close]

BLAST of CmaCh08G001850 vs. Swiss-Prot
Match: SEP15_PIG (15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-18
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 1


Query: 53  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLE 112
           + SS  C +LGF+   LC  C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 113 VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKRE 172
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 173 HILQFLQDKVK 183
            + +FL +K++
Sbjct: 152 SVEEFLSEKLQ 160

[Close]

BLAST of CmaCh08G001850 vs. Swiss-Prot
Match: SEP15_RAT (15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-17
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 1


Query: 53  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLE 112
           + SS  C +LGF+   LCS C  L ++     L   C  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEEAQFETKKL-YAGAILE 91

Query: 113 VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKRE 172
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 173 HILQFLQDKVK 183
            + +FL +K++
Sbjct: 152 SVEEFLSEKLE 160

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BLAST of CmaCh08G001850 vs. TrEMBL
Match: A0A0A0KA30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087180 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.4e-76
Identity = 144/171 (84.21%), Postives = 152/171 (88.89%), Query Frame = 1


Query: 17  MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 76
           MQL   V   A  V +A    AIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 77  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 136
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE++KD+FP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 137 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 188
           SVKVQY FNSPPKL LLDD+GQHKESIRIDNWKREH LQFLQ+KVK SSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CmaCh08G001850 vs. TrEMBL
Match: B9IQU6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12540g PE=4 SV=2)

HSP 1 Score: 263.8 bits (673), Expect = 1.5e-67
Identity = 122/149 (81.88%), Postives = 140/149 (93.96%), Query Frame = 1


Query: 39  IIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSD 98
           + F   +P+  SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELV+DCLKCCTEDSD
Sbjct: 11  LFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 99  DATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLTLLDDEGQ 158
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIEEEKD+FP+VKVQY+FNSPPKL +LDDEGQ
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGQ 130

Query: 159 HKESIRIDNWKREHILQFLQDKVKLSSAI 188
           HKE+IRIDNWKREH+LQFLQ+KVK +SAI
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPASAI 159

[Close]

BLAST of CmaCh08G001850 vs. TrEMBL
Match: A0A067LJ32_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.2e-66
Identity = 119/142 (83.80%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 45  MPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKI 104
           +P+A SKEQLSSRECEDLGFTGLALCSDC+T AEY+K+QELV+DCLKCCTEDSDD+ SKI
Sbjct: 17  LPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLKCCTEDSDDSLSKI 76

Query: 105 TYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLTLLDDEGQHKESIR 164
           TYSGA+LEVCMRKLVFYPEIVGFIEEEKD+FP+VKVQY+FNSPPKL LLDDEGQHKE++R
Sbjct: 77  TYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLILLDDEGQHKETVR 136

Query: 165 IDNWKREHILQFLQDKVKLSSA 187
           IDNWKREH+LQFL++KVK +S+
Sbjct: 137 IDNWKREHLLQFLREKVKHASS 158

[Close]

BLAST of CmaCh08G001850 vs. TrEMBL
Match: V4U1J4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022516mg PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.5e-66
Identity = 121/147 (82.31%), Postives = 135/147 (91.84%), Query Frame = 1


Query: 40  IFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDD 99
           I I S     SKEQLS+RECEDLGFTGLALCSDC+T AEY+KDQELVADCLKCCTEDSDD
Sbjct: 13  IVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDD 72

Query: 100 ATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLTLLDDEGQH 159
           + SKITYSGA+LE CMRKLVFYPEIVGFIEEEKDKFP+V+VQY+FNSPPKL +LD+EGQH
Sbjct: 73  SMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQH 132

Query: 160 KESIRIDNWKREHILQFLQDKVKLSSA 187
           KE+IRIDNWKREH+LQFLQ+KVK +SA
Sbjct: 133 KETIRIDNWKREHMLQFLQEKVKPTSA 159

[Close]

BLAST of CmaCh08G001850 vs. TrEMBL
Match: A0A067FCX2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031251mg PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.5e-66
Identity = 121/147 (82.31%), Postives = 135/147 (91.84%), Query Frame = 1


Query: 40  IFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDD 99
           I I S     SKEQLS+RECEDLGFTGLALCSDC+T AEY+KDQELVADCLKCCTEDSDD
Sbjct: 13  IVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDD 72

Query: 100 ATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLTLLDDEGQH 159
           + SKITYSGA+LE CMRKLVFYPEIVGFIEEEKDKFP+V+VQY+FNSPPKL +LD+EGQH
Sbjct: 73  SMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQH 132

Query: 160 KESIRIDNWKREHILQFLQDKVKLSSA 187
           KE+IRIDNWKREH+LQFLQ+KVK +SA
Sbjct: 133 KETIRIDNWKREHMLQFLQEKVKPTSA 159

[Close]

BLAST of CmaCh08G001850 vs. TAIR10
Match: AT1G05720.1 (AT1G05720.1 selenoprotein family protein)

HSP 1 Score: 246.9 bits (629), Expect = 9.9e-66
Identity = 113/162 (69.75%), Postives = 144/162 (88.89%), Query Frame = 1


Query: 25  KPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQE 84
           K   +  M   +A +I I +  ++ +KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQE
Sbjct: 2   KQREMAKMVVLSAMMILILASTIS-AKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQE 61

Query: 85  LVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIF 144
           LV+DCLKCC +DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIEEEK+KFPSVKVQYIF
Sbjct: 62  LVSDCLKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIF 121

Query: 145 NSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSA 187
           NSPPKL +LD++G+HKESIRIDNWKREH+LQ++++KVK ++A
Sbjct: 122 NSPPKLIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAA 162

[Close]

BLAST of CmaCh08G001850 vs. NCBI nr
Match: gi|659120099|ref|XP_008460012.1| (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 1.5e-79
Identity = 150/171 (87.72%), Postives = 155/171 (90.64%), Query Frame = 1


Query: 17  MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 76
           MQL   V  PAT V +    AAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 77  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 136
           AEYIKDQELVADCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEE+KD+FP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 137 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 188
           SVKVQY FNSPPKL LLDDEGQHKESIRIDNWKREH LQFLQ+KVK SSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CmaCh08G001850 vs. NCBI nr
Match: gi|449445674|ref|XP_004140597.1| (PREDICTED: 15 kDa selenoprotein [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 2.0e-76
Identity = 144/171 (84.21%), Postives = 152/171 (88.89%), Query Frame = 1


Query: 17  MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 76
           MQL   V   A  V +A    AIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 77  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 136
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE++KD+FP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 137 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 188
           SVKVQY FNSPPKL LLDD+GQHKESIRIDNWKREH LQFLQ+KVK SSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CmaCh08G001850 vs. NCBI nr
Match: gi|743917732|ref|XP_011002858.1| (PREDICTED: 15 kDa selenoprotein-like [Populus euphratica])

HSP 1 Score: 263.8 bits (673), Expect = 2.2e-67
Identity = 122/149 (81.88%), Postives = 141/149 (94.63%), Query Frame = 1


Query: 39  IIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSD 98
           + F   +P+A SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELV+DCLKCCTEDSD
Sbjct: 11  LFFAFLLPIAKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 99  DATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLTLLDDEGQ 158
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIEEEKD+FP+VKVQY+FNSPPKL +LDDEG+
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGR 130

Query: 159 HKESIRIDNWKREHILQFLQDKVKLSSAI 188
           HKE+IRIDNWKREH+LQFLQ+KVK +SAI
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPTSAI 159

[Close]

BLAST of CmaCh08G001850 vs. NCBI nr
Match: gi|566242499|ref|XP_002326051.2| (hypothetical protein POPTR_0019s12540g [Populus trichocarpa])

HSP 1 Score: 263.8 bits (673), Expect = 2.2e-67
Identity = 122/149 (81.88%), Postives = 140/149 (93.96%), Query Frame = 1


Query: 39  IIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSD 98
           + F   +P+  SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELV+DCLKCCTEDSD
Sbjct: 11  LFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 99  DATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLTLLDDEGQ 158
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIEEEKD+FP+VKVQY+FNSPPKL +LDDEGQ
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGQ 130

Query: 159 HKESIRIDNWKREHILQFLQDKVKLSSAI 188
           HKE+IRIDNWKREH+LQFLQ+KVK +SAI
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPASAI 159

[Close]

BLAST of CmaCh08G001850 vs. NCBI nr
Match: gi|802554732|ref|XP_012065054.1| (PREDICTED: 15 kDa selenoprotein [Jatropha curcas])

HSP 1 Score: 260.0 bits (663), Expect = 3.2e-66
Identity = 119/142 (83.80%), Postives = 137/142 (96.48%), Query Frame = 1


Query: 45  MPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKI 104
           +P+A SKEQLSSRECEDLGFTGLALCSDC+T AEY+K+QELV+DCLKCCTEDSDD+ SKI
Sbjct: 17  LPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLKCCTEDSDDSLSKI 76

Query: 105 TYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLTLLDDEGQHKESIR 164
           TYSGA+LEVCMRKLVFYPEIVGFIEEEKD+FP+VKVQY+FNSPPKL LLDDEGQHKE++R
Sbjct: 77  TYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLILLDDEGQHKETVR 136

Query: 165 IDNWKREHILQFLQDKVKLSSA 187
           IDNWKREH+LQFL++KVK +S+
Sbjct: 137 IDNWKREHLLQFLREKVKHASS 158

The following BLAST results are available for this feature:

BLAST of CmaCh08G001850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SEP15_BOVIN	3.8e-19	37.40	15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2	[more]
SEP15_HUMAN	6.5e-19	37.40	15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3	[more]
SEP15_DANRE	1.1e-18	36.64	15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2	[more]
SEP15_PIG	1.5e-18	36.64	15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2	[more]
SEP15_RAT	1.6e-17	35.88	15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3	[more]

BLAST of CmaCh08G001850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA30_CUCSA	1.4e-76	84.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087180 PE=4 SV=1	[more]
B9IQU6_POPTR	1.5e-67	81.88	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12540g PE=4 SV=2	[more]
A0A067LJ32_JATCU	2.2e-66	83.80	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1	[more]
V4U1J4_9ROSI	6.5e-66	82.31	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022516mg PE=4 SV=1	[more]
A0A067FCX2_CITSI	6.5e-66	82.31	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031251mg PE=4 SV=1	[more]

BLAST of CmaCh08G001850 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05720.1	9.9e-66	69.75	selenoprotein family protein	[more]

BLAST of CmaCh08G001850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120099\|ref\|XP_008460012.1\|	1.5e-79	87.72	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]
gi\|449445674\|ref\|XP_004140597.1\|	2.0e-76	84.21	PREDICTED: 15 kDa selenoprotein [Cucumis sativus]	[more]
gi\|743917732\|ref\|XP_011002858.1\|	2.2e-67	81.88	PREDICTED: 15 kDa selenoprotein-like [Populus euphratica]	[more]
gi\|566242499\|ref\|XP_002326051.2\|	2.2e-67	81.88	hypothetical protein POPTR_0019s12540g [Populus trichocarpa]	[more]
gi\|802554732\|ref\|XP_012065054.1\|	3.2e-66	83.80	PREDICTED: 15 kDa selenoprotein [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012336	Thioredoxin-like_fold
IPR014912	Sep15_SelM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G001850.1	CmaCh08G001850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 92..183 score: 7.6
IPR014912	Sep15/SelM redox	PFAM	PF08806	Sep15_SelM	coord: 109..181 score: 6.4
None	No IPR available	PANTHER	PTHR13077	FAMILY NOT NAMED	coord: 27..187 score: 1.9
None	No IPR available	PANTHER	PTHR13077:SF6	15 KDA SELENOPROTEIN	coord: 27..187 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G001850	Cucsa.348570	Cucumber (Gy14) v1	cgycmaB0956
CmaCh08G001850	Cla007034	Watermelon (97103) v1	cmawmB883
CmaCh08G001850	Csa6G087180	Cucumber (Chinese Long) v2	cmacuB908
CmaCh08G001850	MELO3C022425	Melon (DHL92) v3.5.1	cmameB820
CmaCh08G001850	ClCG06G001100	Watermelon (Charleston Gray)	cmawcgB808
CmaCh08G001850	CSPI06G06700	Wild cucumber (PI 183967)	cmacpiB928
CmaCh08G001850	CmoCh08G001900	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G001850	CmoCh17G006020	Cucurbita moschata (Rifu)	cmacmoB903
CmaCh08G001850	Lsi09G018280	Bottle gourd (USVL1VR-Ls)	cmalsiB815
CmaCh08G001850	Cp4.1LG12g09780	Cucurbita pepo (Zucchini)	cmacpeB910
CmaCh08G001850	Cp4.1LG17g10790	Cucurbita pepo (Zucchini)	cmacpeB914
CmaCh08G001850	MELO3C022425.2	Melon (DHL92) v3.6.1	cmamedB918
CmaCh08G001850	CsaV3_6G007030	Cucumber (Chinese Long) v3	cmacucB1077
CmaCh08G001850	Cla97C06G110370	Watermelon (97103) v2	cmawmbB925
CmaCh08G001850	Bhi12G002190	Wax gourd	cmawgoB1092
CmaCh08G001850	CsGy6G006710	Cucumber (Gy14) v2	cgybcmaB876
CmaCh08G001850	Carg05014	Silver-seed gourd	carcmaB0112

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G001850	CmaCh17G006180	Cucurbita maxima (Rimu)	cmacmaB389

The following block(s) are covering this gene:

None