CSPI06G06700 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G06700
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	selenoprotein family protein
Location	Chr6 : 5772736 .. 5776148 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTTAAAAATTCGTCTTTTGTCGAGAGAGAGAGTTTTCCAATCGTCCGTAGGCTTCGCCTTTTCACCCTCAGTCGCCGGCGACAACAGAGATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGGTGACGCGTTCAATTCAGTGGTGTTTCTTACACTAATTCTTGATTCGGTTTTGAATTTACATCTTTATCACTGCATTTCTTCCGTTCTCATAAATTAGCAGCATCTTATTGGATTGTGTTCGCTTGTTTTTTTTATTGAACAATTGATTGGTCGTCTTGTGGGTTGTTTTATTTGTGTATCTTTTTTGCTTGATTTGGATTTTGGATTTCTGGGTTACTTGATTATAGTCTGACGTGTAAAGTGTTGGTTTTAATTTCGATATTTTCAATCAATTTCTTAGTATTGTGGATAGAGTTTGTTCATATTAGTTCATATTTTGTTCAAAGAGACGATAGTGACGAGTTCAGTGATAGAGTTTAGGTCCTACTACTTTGATCGTATAGGAATTTGTTAGGGAAGATGGTTCCAGAAATTCTGATGTAATAACTCACTCTTTTTTCAAAAGATTACAAAATTGTTTCTATGGGAAGAAAAAAGTTCTCAACTTTTAAAAGGGATAGACTTATCTTGTTCCTCATGCAATTTGTCGATTGTGTTTTTCAGAAAACACGTATCGTGTCTTTCTGATAAGTCGTAATTTGAATGCAATTAGTGATTGTTAGTGCTATTCCTTTTGGCAACTTCTTTTTTTCGCAATGTCCTTTATTCACAAGTGGAAATGGCTTCATGACTTTCCCACACTATTTTGAGAAACAACTGTTTGTAATTTTAAAATAATGTTTTGTGAAAATATCTTCAACTGTTTTTAGAAAGTGGTAAACTTATTTTTTCTAGTTTGTTTTCACATACATCTATTTCTTTTAGTTAAGTTGAAGATATTAGACACAATCCTCATGCCCAGATTCGTACTGCAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGGTACGTCATAAACATGTTGATTTCTTCAAGGGGAATCAATGAAATCTTGTTTCTCCCCCAAAAATTTAATTATCTGACTATTCCATTTGTTTTTATTAACATATGACACTACTAAACTGCATGCTTGTACATCCCTTTGGTAGATTTGTCAATGTAAAACACATTAGTTCAAGAGATATAATTGTCACGGCTATGCATCAAAACAAGGTTTCAGTAAACAAGAGAAACTAACTCATCTTTAGAAAAGGATAATTCAAGGAATGTGCAACACTTTATCAATGCATATCACAACCCTATTGAAAGTGGGAGAGTTTAGAAATACTTGGCTCATCATTGAACTCTAGTGTACCCTATTCCATATTGAGTGTACATATCCATAGTATCATATTCTTTTATCAGTGTGTCAAACTTCCAGACAGATTCTCCAAATTTCCACACTCGATAGGAGACGATTACTTATTATAGTATTTTCCCTCTTCCATTTAGCTCTATACCACTCCATGGTGTTACAGCGACCACTGCTTTTTATCCTCATGAACTCCCCTTTTTGAGATGGAGTATTGTAGCATGCTTGCTCCTTTGGTATCTCGTGGGAAGTGTATCTCAAGAAGAATAGTGGGATATGTATCTCGAGAAGAATAGTAAGACTTTTAGGGGAGCTGAGATGTCCGTTACTTGGACTTCTTATAACTATTAGTTTAGTCTTATTCTTTTTCTTATTAGTGTCTATTCTGTAAGTTGTTAAGGAGTCCTTTTGGGAGCTTGGTTTTTTTTTGTCTCAATATGTTCTTTCATTTATCTTCACGAAAGCTTGGTTTCCAAAAATACCATTAAAAGTTCAAGAAACGTTCTTTCAAATCCTGCTAGTGAGCTCACACCAAATATTCCAGAAAAATGCTTTGTTGATGGCTGGATAAAGTCCTCTTATAACAAAAAGTATGCCCCCACAAGAACCAAAGCCAATATGTCATAATATTACCAGGGAGAAATGTCCGATATACATCTAGAATTTAGAGCTTCTCCAAGAGATTGAGTATTCAGTTCCACCCTTATTCAAATTCAGTACTCTTTTGTTGATTGTATTTCATAACTAATTTGCTTATTAACGATGAAATCCAATTCACTAAGTTCACTGACTGCAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGTAACTTCTACTTTTTCAAGTCACTTAGTTATAATAATAATCTCTAGAAGAATGTTTAGAGTGATGAGTTAGTCAGTGTACATATAACTAATCTTAGGAGTTGTAAAGCTTTGAGTTAAGCTGAGTTGAGTTTTGAAATCTAAAGTTAATAGGTCGGAGTTCGAGAGTTTGTGTTTGGAGTGTAGAGTTATAAAATGAAGTTTTTCGATAAATGTGCAAACTTCAATTATGAGTAGTTGATATAACATCAACTTATGAAGTCGATGGGCCAAGCACCCCTTTATATACGAAATGAATGAAGATTGTGTTTGAGGAGGTTGAGATGCTGAATATAGCGATATAGAATTTACTTTAGCTTAATGATAACCTCGATGTATAAAAGCGTTTGATATTTTATTATTTTTTAAAACTTTTGCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAAGGTTCTCTCACCTTTTTCTTTTTTTTTTTTTAATTTTAAATTTTAGGTTACATCTCTTAATCAATGTAAAAAACTTGTTGAATTTGAATGAAACTATTATCAGCCAGAAAAAGAAGAAAGAAAGAAAAAGAATTGAGGTGAGTGAACACTGGATTTTGTGAATTTCAAGGTTAGCAGTGGAAATAGTTCTGATTTCCTTTTGTCTAAATCTTTTACTGGAGGAAGACACACCTTTCATCCGGTAAACCAATACATTTTGAACGTAATGGAATGAATTTGTCGTATAACGTAATTCTAGATCTATGTTTGGACTGACCGTCCTGGAACCAATTTGCAATACCAAACTTATTATGTTTTCATGACTGGCCGTCCTGGAACCAATTTGCAATA

mRNA sequence

ATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

Coding sequence (CDS)

ATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

Homology

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BLAST of CSPI06G06700 vs. Swiss-Prot
Match: SEP15_PIG (15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-19
Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 1


Query: 5   PGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYI 64
           PG W         L ATA+  +S+        + SS  C +LGF+   LC  C  L ++ 
Sbjct: 5   PGGWLGPALGLRLLLATALQMVSAFGA-----EFSSESCRELGFSSNLLCGSCDLLGQFD 64

Query: 65  KDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVK 124
             Q L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  DK + F  ++
Sbjct: 65  LLQ-LDPDCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQ 124

Query: 125 VQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKR 168
           ++Y   S P L LLDD G   E + I  W  +   +FL EK++R
Sbjct: 125 IKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLQR 161

[Close]

BLAST of CSPI06G06700 vs. Swiss-Prot
Match: SEP15_BOVIN (15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-19
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 1


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLE 96
           + SS  C +LGF+   LCS C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 97  VCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

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BLAST of CSPI06G06700 vs. Swiss-Prot
Match: SEP15_HUMAN (15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3)

HSP 1 Score: 95.5 bits (236), Expect = 6.0e-19
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 1


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLE 96
           + SS  C +LGF+   LCS C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSEACRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 97  VCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

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BLAST of CSPI06G06700 vs. Swiss-Prot
Match: SEP15_DANRE (15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 1


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLE 96
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 97  VCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 143 SVEEFLSEKLER 152

[Close]

BLAST of CSPI06G06700 vs. Swiss-Prot
Match: SEP15_RAT (15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-17
Identity = 54/151 (35.76%), Postives = 81/151 (53.64%), Query Frame = 1


Query: 18  LTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCC 77
           L ATA   +S++       + SS  C +LGF+   LCS C  L ++     L   C  CC
Sbjct: 18  LLATAFQAVSALGA-----EFSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCC 77

Query: 78  AEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLIL 137
            E++   T K+ Y+GA+LEVC  KL  +P++  F+  DK + F  ++++Y   S P L L
Sbjct: 78  QEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKL 137

Query: 138 LDDKGQHKESIRIDNWKREHFLQFLQEKVKR 168
           LDD G   E + I  W  +   +FL EK++R
Sbjct: 138 LDDNGNIAEELSILKWNTDSVEEFLSEKLER 161

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BLAST of CSPI06G06700 vs. TrEMBL
Match: A0A0A0KA30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087180 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.2e-92
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 1


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWNSAIAVTVALTATAIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CSPI06G06700 vs. TrEMBL
Match: B9IQU6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12540g PE=4 SV=2)

HSP 1 Score: 263.8 bits (673), Expect = 1.4e-67
Identity = 122/149 (81.88%), Postives = 138/149 (92.62%), Query Frame = 1


Query: 23  IIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSD 82
           + F   +P+  SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELVSDCLKCC EDSD
Sbjct: 11  LFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 83  DATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQ 142
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIE++KDQFP+VKVQY FNSPPKLI+LDD+GQ
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGQ 130

Query: 143 HKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           HKE+IRIDNWKREH LQFLQEKVK +SAI
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPASAI 159

[Close]

BLAST of CSPI06G06700 vs. TrEMBL
Match: A0A067LJ32_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.6e-66
Identity = 124/155 (80.00%), Postives = 140/155 (90.32%), Query Frame = 1


Query: 16  VALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLK 75
           VAL    II    +P+A SKEQLSSRECEDLGFTGLALCSDC+T AEY+K+QELVSDCLK
Sbjct: 8   VALLWVCII----LPIASSKEQLSSRECEDLGFTGLALCSDCNTFAEYVKNQELVSDCLK 67

Query: 76  CCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLI 135
           CC EDSDD+ SKITYSGA+LEVCMRKLVFYPEIVGFIE++KDQFP+VKVQY FNSPPKLI
Sbjct: 68  CCTEDSDDSLSKITYSGALLEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYVFNSPPKLI 127

Query: 136 LLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSA 171
           LLDD+GQHKE++RIDNWKREH LQFL+EKVK +S+
Sbjct: 128 LLDDEGQHKETVRIDNWKREHLLQFLREKVKHASS 158

[Close]

BLAST of CSPI06G06700 vs. TrEMBL
Match: M5Y5K8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012718mg PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.9e-65
Identity = 121/155 (78.06%), Postives = 138/155 (89.03%), Query Frame = 1


Query: 17  ALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKC 76
           AL A  ++    +PL  SKEQLS+RECE+LGFTGLALCSDC++LAEY+KDQELVSDC KC
Sbjct: 3   ALIAMLVVLGVVVPLGASKEQLSTRECENLGFTGLALCSDCNSLAEYVKDQELVSDCRKC 62

Query: 77  CAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLIL 136
           C EDSDD+ SK+TYSGA+LEVCMRKLVFYPEIVGFIE++KD+FPSVKVQY FNSPPKLIL
Sbjct: 63  CTEDSDDSISKVTYSGAILEVCMRKLVFYPEIVGFIEEEKDRFPSVKVQYIFNSPPKLIL 122

Query: 137 LDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           LDD  +HKE+IRIDNWKREH LQFLQ KVKR+SAI
Sbjct: 123 LDDADEHKETIRIDNWKREHILQFLQGKVKRASAI 157

[Close]

BLAST of CSPI06G06700 vs. TrEMBL
Match: A9PBN4_POPTR (Selenoprotein OS=Populus trichocarpa GN=POPTR_0013s13060g PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.6e-65
Identity = 116/142 (81.69%), Postives = 132/142 (92.96%), Query Frame = 1


Query: 29  MPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKI 88
           +P+  SKEQLSS ECEDLGF+GLALCSDCHT +EY+K+QELVSDCLKCC EDSDD+ SKI
Sbjct: 25  LPIVKSKEQLSSGECEDLGFSGLALCSDCHTFSEYVKNQELVSDCLKCCTEDSDDSISKI 84

Query: 89  TYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIR 148
           TYSGA+LEVCMRKLVFYPEIVGFIE++KDQFP+ KVQY FNSPPKLI+LDDKGQHKE+IR
Sbjct: 85  TYSGAILEVCMRKLVFYPEIVGFIEEEKDQFPTFKVQYLFNSPPKLIMLDDKGQHKETIR 144

Query: 149 IDNWKREHFLQFLQEKVKRSSA 171
           IDNWKREH LQ+L+EKVK +SA
Sbjct: 145 IDNWKREHMLQYLREKVKPTSA 166

[Close]

BLAST of CSPI06G06700 vs. TAIR10
Match: AT1G05720.1 (AT1G05720.1 selenoprotein family protein)

HSP 1 Score: 246.9 bits (629), Expect = 9.1e-66
Identity = 115/159 (72.33%), Postives = 143/159 (89.94%), Query Frame = 1


Query: 12  IAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVS 71
           +A  V L+A  I+ ++S   A  KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELVS
Sbjct: 6   MAKMVVLSAMMILILASTISA--KEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVS 65

Query: 72  DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSP 131
           DCLKCCA+DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIE++K++FPSVKVQY FNSP
Sbjct: 66  DCLKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSP 125

Query: 132 PKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSA 171
           PKLI+LD+ G+HKESIRIDNWKREH LQ+++EKVK ++A
Sbjct: 126 PKLIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAA 162

[Close]

BLAST of CSPI06G06700 vs. NCBI nr
Match: gi|449445674|ref|XP_004140597.1| (PREDICTED: 15 kDa selenoprotein [Cucumis sativus])

HSP 1 Score: 346.3 bits (887), Expect = 3.1e-92
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 1


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWNSAIAVTVALTATAIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CSPI06G06700 vs. NCBI nr
Match: gi|659120099|ref|XP_008460012.1| (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 334.3 bits (856), Expect = 1.2e-88
Identity = 163/171 (95.32%), Postives = 166/171 (97.08%), Query Frame = 1


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWN A AVTV L A AIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+DKDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           SVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CSPI06G06700 vs. NCBI nr
Match: gi|743917732|ref|XP_011002858.1| (PREDICTED: 15 kDa selenoprotein-like [Populus euphratica])

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-67
Identity = 122/149 (81.88%), Postives = 139/149 (93.29%), Query Frame = 1


Query: 23  IIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSD 82
           + F   +P+A SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELVSDCLKCC EDSD
Sbjct: 11  LFFAFLLPIAKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 83  DATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQ 142
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIE++KDQFP+VKVQY FNSPPKLI+LDD+G+
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGR 130

Query: 143 HKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           HKE+IRIDNWKREH LQFLQEKVK +SAI
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPTSAI 159

[Close]

BLAST of CSPI06G06700 vs. NCBI nr
Match: gi|566242499|ref|XP_002326051.2| (hypothetical protein POPTR_0019s12540g [Populus trichocarpa])

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-67
Identity = 122/149 (81.88%), Postives = 138/149 (92.62%), Query Frame = 1


Query: 23  IIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSD 82
           + F   +P+  SKEQLSSRECEDLGFTGLALCSDC+TLAEY+K+QELVSDCLKCC EDSD
Sbjct: 11  LFFTFVLPIVKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTEDSD 70

Query: 83  DATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQ 142
           D+ SKITYSGA++EVCMRKLVFYPEIVGFIE++KDQFP+VKVQY FNSPPKLI+LDD+GQ
Sbjct: 71  DSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDEGQ 130

Query: 143 HKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           HKE+IRIDNWKREH LQFLQEKVK +SAI
Sbjct: 131 HKETIRIDNWKREHMLQFLQEKVKPASAI 159

[Close]

BLAST of CSPI06G06700 vs. NCBI nr
Match: gi|645231661|ref|XP_008222499.1| (PREDICTED: 15 kDa selenoprotein [Prunus mume])

HSP 1 Score: 259.2 bits (661), Expect = 5.0e-66
Identity = 123/155 (79.35%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 17  ALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKC 76
           AL A  ++F   +PL  SKEQLS+RECE+LGFTGLALCSDC++LAEY+KDQELVSDC KC
Sbjct: 3   ALIAMLVVFGVVVPLGASKEQLSTRECENLGFTGLALCSDCNSLAEYVKDQELVSDCRKC 62

Query: 77  CAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLIL 136
           C EDSDD+ SK+TYSGA+LEVCMRKLVFYPEIVGFIE++KD+FPSVKVQY FNSPPKLIL
Sbjct: 63  CTEDSDDSISKVTYSGAILEVCMRKLVFYPEIVGFIEEEKDRFPSVKVQYIFNSPPKLIL 122

Query: 137 LDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 172
           LDD  +HKE+IRIDNWKREH LQFLQ KVKRSSAI
Sbjct: 123 LDDADEHKETIRIDNWKREHILQFLQGKVKRSSAI 157

The following BLAST results are available for this feature:

BLAST of CSPI06G06700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SEP15_PIG	2.7e-19	35.37	15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2	[more]
SEP15_BOVIN	3.5e-19	38.64	15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2	[more]
SEP15_HUMAN	6.0e-19	38.64	15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3	[more]
SEP15_DANRE	1.3e-18	37.88	15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2	[more]
SEP15_RAT	2.5e-17	35.76	15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3	[more]

BLAST of CSPI06G06700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA30_CUCSA	2.2e-92	99.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087180 PE=4 SV=1	[more]
B9IQU6_POPTR	1.4e-67	81.88	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12540g PE=4 SV=2	[more]
A0A067LJ32_JATCU	4.6e-66	80.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1	[more]
M5Y5K8_PRUPE	3.9e-65	78.06	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012718mg PE=4 SV=1	[more]
A9PBN4_POPTR	6.6e-65	81.69	Selenoprotein OS=Populus trichocarpa GN=POPTR_0013s13060g PE=2 SV=1	[more]

BLAST of CSPI06G06700 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05720.1	9.1e-66	72.33	selenoprotein family protein	[more]

BLAST of CSPI06G06700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445674\|ref\|XP_004140597.1\|	3.1e-92	99.42	PREDICTED: 15 kDa selenoprotein [Cucumis sativus]	[more]
gi\|659120099\|ref\|XP_008460012.1\|	1.2e-88	95.32	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]
gi\|743917732\|ref\|XP_011002858.1\|	2.0e-67	81.88	PREDICTED: 15 kDa selenoprotein-like [Populus euphratica]	[more]
gi\|566242499\|ref\|XP_002326051.2\|	2.0e-67	81.88	hypothetical protein POPTR_0019s12540g [Populus trichocarpa]	[more]
gi\|645231661\|ref\|XP_008222499.1\|	5.0e-66	79.35	PREDICTED: 15 kDa selenoprotein [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012336	Thioredoxin-like_fold
IPR014912	Sep15_SelM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G06700.1	CSPI06G06700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 76..167 score: 1.06
IPR014912	Sep15/SelM redox	PFAM	PF08806	Sep15_SelM	coord: 93..165 score: 5.2
None	No IPR available	PANTHER	PTHR13077	FAMILY NOT NAMED	coord: 11..171 score: 1.3
None	No IPR available	PANTHER	PTHR13077:SF6	15 KDA SELENOPROTEIN	coord: 11..171 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G06700	Cla007034	Watermelon (97103) v1	cpiwmB556
CSPI06G06700	Csa6G087180	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G06700	MELO3C022425	Melon (DHL92) v3.5.1	cpimeB433
CSPI06G06700	ClCG06G001100	Watermelon (Charleston Gray)	cpiwcgB503
CSPI06G06700	Lsi09G018280	Bottle gourd (USVL1VR-Ls)	cpilsiB404
CSPI06G06700	MELO3C022425.2	Melon (DHL92) v3.6.1	cpimedB431
CSPI06G06700	CsaV3_6G007030	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G06700	Cla97C06G110370	Watermelon (97103) v2	cpiwmbB495
CSPI06G06700	Bhi12G002190	Wax gourd	cpiwgoB548
CSPI06G06700	Cucsa.348570	Cucumber (Gy14) v1	cgycpiB517
CSPI06G06700	CmaCh17G006180	Cucurbita maxima (Rimu)	cmacpiB379
CSPI06G06700	CmaCh08G001850	Cucurbita maxima (Rimu)	cmacpiB928
CSPI06G06700	CmoCh17G006020	Cucurbita moschata (Rifu)	cmocpiB367
CSPI06G06700	CmoCh08G001900	Cucurbita moschata (Rifu)	cmocpiB907
CSPI06G06700	Cp4.1LG17g10790	Cucurbita pepo (Zucchini)	cpecpiB328
CSPI06G06700	CsGy6G006710	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G06700	Carg18916	Silver-seed gourd	carcpiB0804
CSPI06G06700	Carg05014	Silver-seed gourd	carcpiB0095

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None