Lsi09G017730 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G017730
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	40S ribosomal protein S27
Location	chr09 : 26489893 .. 26491232 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCTGCCTGATGGCAGCGCGAGTGCGTAGCCCTAGGCACTTCAAAAACTAAAGGCTGAGATTCATTTCTAAAGAAATCAAACGGTCCACAATTTCCAGCTGCTCCTTTATATTCATCCTAGACGGCGCTCTTATCCTCTTTCTTCACATTCGTCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTCCTTCCTGATCATCATGGTAAACTCCAAATTTCCCTGCTGCATTTTGATTTTCGGATCGAACTAATTTCACTTTCTTTCGCGCTATTGACAGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTATGTCGATTCGTGTAAATCCTTTTGCCTTTGTTTAATCTAATCTTTCTTTCCATGATGATGATCGAGCTGTTCTGTGAATTCTGAATGCAGGACGTGAAGTGCCAAGGTTGCTTTAACATGTAAGTCTTCATCTTTTTTTCATTTATGGTTACTTCAGTATGGACATTTAGTTTTTTTTTTTTTTTAAAAAAATGAATGATGACAAAAAATTATTTGAATGAAAAACAGAACCACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGTGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAATTTCCTTGGCTCAGAATTGGATTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCTCGGGTTTTTCTACATTTTGGTTGTTGATTATTCAATTTTGCTTGAGAAGAAAGAGCATTTTGGCACCCCTGTTGCAGTACGTTAATTTAATGTTGTCAATGAAACTAAGTTAAAGTCTTGTTTGAAGTAATTCACATCGAGTGTTTTGCGTGTCCCCCAATTCTATTTTAATTGATTGATCTGTTTTGATTTGCTTCCCATTACTTCCATGAGATGTAAAATTAGATTGTATTTTCTGCTGCTTTTAATGTTTGAAATATTGAACTGTTCTTTCTCAAGGGGTTTGTCATTTGTAGCCGTGAGTTGCTTGTATAGTACTAAAGAGATTTGTGGTTCTAATCCTCCCCTCCTTATTGTACTAGAATAGTTTGTCATTTGCAAGGCATTAGACTTTCTTGTTTTTGCTTCAGTGTCATAGTGTGTAGTGATTTTCCAATTGCCCCTCTTGATCCTTCTTATTATGATGTCGTGTAGTGGTTGCC

mRNA sequence

CCTCTGCCTGATGGCAGCGCGAGTGCGTAGCCCTAGGCACTTCAAAAACTAAAGGCTGAGATTCATTTCTAAAGAAATCAAACGGTCCACAATTTCCAGCTGCTCCTTTATATTCATCCTAGACGGCGCTCTTATCCTCTTTCTTCACATTCGTCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTCCTTCCTGATCATCATGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAAGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGTGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAATTTCCTTGGCTCAGAATTGGATTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCTCGGGTTTTTCTACATTTTGGTTGTTGATTATTCAATTTTGCTTGAGAAGAAAGAGCATTTTGGCACCCCTGTTGCAGTACGTTAATTTAATGTTGTCAATGAAACTAAGTTAAAGTCTTGTTTGAAGTAATTCACATCGAGTGTTTTGCGTGTCCCCCAATTCTATTTTAATTGATTGATCTGTTTTGATTTGCTTCCCATTACTTCCATGAGATGTAAAATTAGATTGTATTTTCTGCTGCTTTTAATGTTTGAAATATTGAACTGTTCTTTCTCAAGGGGTTTGTCATTTGTAGCCGTGAGTTGCTTGTATAGTACTAAAGAGATTTGTGGTTCTAATCCTCCCCTCCTTATTGTACTAGAATAGTTTGTCATTTGCAAGGCATTAGACTTTCTTGTTTTTGCTTCAGTGTCATAGTGTGTAGTGATTTTCCAATTGCCCCTCTTGATCCTTCTTATTATGATGTCGTGTAGTGGTTGCC

Coding sequence (CDS)

ATGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAAGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGTGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA

Protein sequence

MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Homology

[Close]

BLAST of Lsi09G017730 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 180.6 bits (457), Expect = 7.1e-45
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.3e-42
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Lsi09G017730 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-41
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Lsi09G017730 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.3e-37
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          C +VLC PTG   +LTEGCSFRRK D
Sbjct: 61 CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of Lsi09G017730 vs. TrEMBL
Match: E5GB53_CUCME (40S ribosomal protein S27 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. TrEMBL
Match: A0A0A0K9G0_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119

Query: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 87
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of Lsi09G017730 vs. TrEMBL
Match: A0A0A0KTU2_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_5G466870 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.0e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. TrEMBL
Match: A0A059CAJ6_EUCGR (40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.0e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. TrEMBL
Match: B9RG16_RICCO (40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.0e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27)

HSP 1 Score: 180.6 bits (457), Expect = 4.0e-46
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 170.6 bits (431), Expect = 4.1e-43
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Lsi09G017730 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 167.9 bits (424), Expect = 2.7e-42
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Lsi09G017730 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 151.4 bits (381), Expect = 2.6e-37
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQ VLCQPTGG+AKLT GCSFR+  D
Sbjct: 61 CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of Lsi09G017730 vs. NCBI nr
Match: gi|700191201|gb|KGN46405.1| (hypothetical protein Csa_6G091290 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 3.9e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119

Query: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 87
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of Lsi09G017730 vs. NCBI nr
Match: gi|659119940|ref|XP_008459925.1| (PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 3.9e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis])

HSP 1 Score: 181.0 bits (458), Expect = 8.7e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. NCBI nr
Match: gi|565475384|ref|XP_006295333.1| (hypothetical protein CARUB_v10024423mg [Capsella rubella])

HSP 1 Score: 181.0 bits (458), Expect = 8.7e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Lsi09G017730 vs. NCBI nr
Match: gi|15233044|ref|NP_191670.1| (40S ribosomal protein S27-2 [Arabidopsis thaliana])

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-42
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

The following BLAST results are available for this feature:

BLAST of Lsi09G017730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS272_ARATH	7.1e-45	97.67	40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2	[more]
RS271_ARATH	7.3e-42	94.05	40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1	[more]
RS27_HORVU	1.6e-41	93.02	40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2	[more]
RS273_ARATH	4.7e-41	92.86	40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2	[more]
RS27_CHLRE	9.3e-37	83.72	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1	[more]

BLAST of Lsi09G017730 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB53_CUCME	2.7e-43	100.00	40S ribosomal protein S27 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0K9G0_CUCSA	2.7e-43	100.00	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1	[more]
A0A0A0KTU2_CUCSA	6.0e-43	98.84	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_5G466870 PE=3 SV=1	[more]
A0A059CAJ6_EUCGR	6.0e-43	98.84	40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1	[more]
B9RG16_RICCO	6.0e-43	98.84	40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1	[more]

BLAST of Lsi09G017730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	4.0e-46	97.67	ribosomal protein S27	[more]
AT2G45710.1	4.1e-43	94.05	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	2.7e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	2.6e-37	82.56	Zinc-binding ribosomal protein family protein	[more]

BLAST of Lsi09G017730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191201\|gb\|KGN46405.1\|	3.9e-43	100.00	hypothetical protein Csa_6G091290 [Cucumis sativus]	[more]
gi\|659119940\|ref\|XP_008459925.1\|	3.9e-43	100.00	PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]	[more]
gi\|255543244\|ref\|XP_002512685.1\|	8.7e-43	98.84	PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]	[more]
gi\|565475384\|ref\|XP_006295333.1\|	8.7e-43	98.84	hypothetical protein CARUB_v10024423mg [Capsella rubella]	[more]
gi\|15233044\|ref\|NP_191670.1\|	1.1e-42	97.67	40S ribosomal protein S27-2 [Arabidopsis thaliana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR023407	Ribosomal protein S27e, zinc-binding domain
IPR011332	Ribosomal_zn-bd
IPR000592	Ribosomal_S27e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G017730.1	Lsi09G017730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PRODOM	PD004466		coord: 46..84 score: 1.0
IPR000592	Ribosomal protein S27e	HAMAP	MF_00371	Ribosomal_S27e	coord: 24..84 score: 16
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 1..86 score: 1.5
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 30..84 score: 1.8
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 38..70 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 30..84 score: 9.89
IPR023407	Ribosomal protein S27e, zinc-binding domain	GENE3D	G3DSA:2.20.25.100		coord: 30..84 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G017730	Csa6G091290	Cucumber (Chinese Long) v2	culsiB402
Lsi09G017730	CSPI06G07300	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G017730	Cucsa.349170	Cucumber (Gy14) v1	cgylsiB562
Lsi09G017730	CmaCh17G013930	Cucurbita maxima (Rimu)	cmalsiB333
Lsi09G017730	CmoCh17G013440	Cucurbita moschata (Rifu)	cmolsiB322
Lsi09G017730	Cla007089	Watermelon (97103) v1	lsiwmB041
Lsi09G017730	MELO3C022363	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G017730	ClCG06G001690	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G017730	MELO3C022363.2	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G017730	Cla97C06G110970	Watermelon (97103) v2	lsiwmbB026
Lsi09G017730	Bhi12G002119	Wax gourd	lsiwgoB021
Lsi09G017730	Cp4.1LG17g09510	Cucurbita pepo (Zucchini)	cpelsiB249
Lsi09G017730	CsGy6G007310	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G017730	Carg11555	Silver-seed gourd	carlsiB011
Lsi09G017730	Carg03803	Silver-seed gourd	carlsiB890
Lsi09G017730	CsaV3_6G007700	Cucumber (Chinese Long) v3	cuclsiB424

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G017730	Cucurbita maxima (Rimu)	cmalsiB812
Lsi09G017730	Cucurbita moschata (Rifu)	cmolsiB798
Lsi09G017730	Cucurbita pepo (Zucchini)	cpelsiB103