Cp4.1LG17g09510 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g09510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	40S ribosomal protein S27
Location	Cp4.1LG17 : 7270571 .. 7272002 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTCTTTTGACAGGGAAGAACATTTTACTTAAATTTGTGAATGGACGGTTATACCCTTCAGTTCATGGCCATGCGTAGCCCTAGGCACTTCAGAGACTAAAGGCTGAGATTTATTTCTAACGAAATCCAACGGTTCAAAATTTCCAGCTGCTCCCTTATATTCTTACTAGACGGCGCTATATCGCTTTTTTATAACGTTCATTGCACCGCCCTGATTCTTTCGCGAACTCTCGTTGGGATTCTAGGGTTCGCGATCCAGACAGTTCCTTACTGATCAACATGGTAAACTTCCTGCTACATTCGATTATGCCTTTTTTTCTCTTCTGAATTTGGATCCAACAATTTTCACTTTCTTTCACGCTATTTTCAGGTTCTTCAAAACGATATTGATTTGCTTAATCCTCCGGCCGAACTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTTTGCTCTTTCGTTTAAATTCTTTTTGCTTTGTTTGATCTAATAATCTTTTCTCCGACAATGGTGATCGAGCTGTTTTGTGATTTCTGTGGGCAGGACGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTTTCATCTTTTCTCATGTATTATGGTTATGTGACCTTTCTTTTTTCTGCAAGTTGTTGAAGTTGGGTTCTTAAGTGAGTAATGGCACATAACTCTTTGAATGAATAACAGAACCACTGTATTCAGTCATTCACAGACAGTCGTGGTATGTGGGAATTGCCAGTCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGCTGCTCCTTCAGAAGAAAGGGTGACTAATTCCTTGGCCCCAGAATTGGCTTTTAGTAGGATCAGGATGGATGGGTTTGAATTTTGATATTGCAATTGAGCACAATTTTTCTTTGTCTCGGGTTTTCTACGTTTTGCATGTTGATTATTCAATTTTGCTTGAGAAGAGGAGCATTTTGTCCCCGTTGTTGCAGTACGTTAATTTTCATGTTTTCAATGAAACTAAACTTTGTTTGAAGTAATTCACACATCAGTTGTATTGCGTGTTATCCAGTACTTCTTTAATTGATCGAACTGTTTTGATTTGGCTGCCATTATTCCACGAGTTATGAACTTAGATCCTATTTTCTGATGCTTTTAGTGTTGGAAATATTGGATTGATATTTGTTATTTATCAGATAGTTAATTCAAAGTCATCGGGAATTCTTGTTTTTATCTCAATGTCAGGGAGTGGTTGTCTATTTGTTCCCCTTGATCCTTATTTTCAATTGTTCTTATCGTCTTTTTCTGGTGTGCTTGTCGTTTTTGTACTACTAAGTAGCATCCATCGAACGAGTGTCGCAGAGAATGTTTGATACTATATTCTGACATATTTTTGGTCCTGTGGTCTAATGTTTGG

mRNA sequence

AATTTTCTTTTGACAGGGAAGAACATTTTACTTAAATTTGTGAATGGACGGTTATACCCTTCAGTTCATGGCCATGCGTAGCCCTAGGCACTTCAGAGACTAAAGGCTGAGATTTATTTCTAACGAAATCCAACGGTTCAAAATTTCCAGCTGCTCCCTTATATTCTTACTAGACGGCGCTATATCGCTTTTTTATAACGTTCATTGCACCGCCCTGATTCTTTCGCGAACTCTCGTTGGGATTCTAGGGTTCGCGATCCAGACAGTTCCTTACTGATCAACATGGTTCTTCAAAACGATATTGATTTGCTTAATCCTCCGGCCGAACTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAGACAGTCGTGGTATGTGGGAATTGCCAGTCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGCTGCTCCTTCAGAAGAAAGGGTGACTAATTCCTTGGCCCCAGAATTGGCTTTTAGTAGGATCAGGATGGATGGGTTTGAATTTTGATATTGCAATTGAGCACAATTTTTCTTTGTCTCGGGTTTTCTACGTTTTGCATGTTGATTATTCAATTTTGCTTGAGAAGAGGAGCATTTTGTCCCCGTTGTTGCAGTACGTTAATTTTCATGTTTTCAATGAAACTAAACTTTGTTTGAAGTAATTCACACATCAGTTGTATTGCGTGTTATCCAGTACTTCTTTAATTGATCGAACTGTTTTGATTTGGCTGCCATTATTCCACGAGTTATGAACTTAGATCCTATTTTCTGATGCTTTTAGTGTTGGAAATATTGGATTGATATTTGTTATTTATCAGATAGTTAATTCAAAGTCATCGGGAATTCTTGTTTTTATCTCAATGTCAGGGAGTGGTTGTCTATTTGTTCCCCTTGATCCTTATTTTCAATTGTTCTTATCGTCTTTTTCTGGTGTGCTTGTCGTTTTTGTACTACTAAGTAGCATCCATCGAACGAGTGTCGCAGAGAATGTTTGATACTATATTCTGACATATTTTTGGTCCTGTGGTCTAATGTTTGG

Coding sequence (CDS)

ATGGTTCTTCAAAACGATATTGATTTGCTTAATCCTCCGGCCGAACTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAGACAGTCGTGGTATGTGGGAATTGCCAGTCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGCTGCTCCTTCAGAAGAAAGGGTGACTAA

Protein sequence

MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

Homology

[Close]

BLAST of Cp4.1LG17g09510 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 177.9 bits (450), Expect = 4.6e-44
Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-41
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 77/84 (91.67%), Postives = 83/84 (98.81%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ++LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Cp4.1LG17g09510 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 6.2e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ+VLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Cp4.1LG17g09510 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-37
Identity = 74/86 (86.05%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          C SVLC PTG   RLTEGCSFRRK D
Sbjct: 61 CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. TrEMBL
Match: A0A067JH67_JATCU (40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 7.9e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. TrEMBL
Match: V4W2J8_9ROSI (40S ribosomal protein S27 OS=Citrus clementina GN=CICLE_v10017332mg PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 7.9e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. TrEMBL
Match: A0A059CAJ6_EUCGR (40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 7.9e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. TrEMBL
Match: B9RG16_RICCO (40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 7.9e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. TrEMBL
Match: A0A0A0KTU2_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_5G466870 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 7.9e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27)

HSP 1 Score: 177.9 bits (450), Expect = 2.6e-45
Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 167.9 bits (424), Expect = 2.7e-42
Identity = 77/84 (91.67%), Postives = 83/84 (98.81%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ++LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Cp4.1LG17g09510 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 167.5 bits (423), Expect = 3.5e-42
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ+VLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Cp4.1LG17g09510 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 150.6 bits (379), Expect = 4.4e-37
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGG+A+LT GCSFR+  D
Sbjct: 61 CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis])

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. NCBI nr
Match: gi|567909151|ref|XP_006446889.1| (hypothetical protein CICLE_v10017335mg [Citrus clementina])

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. NCBI nr
Match: gi|1009143419|ref|XP_015889256.1| (PREDICTED: 40S ribosomal protein S27-2 [Ziziphus jujuba])

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-42
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAE+EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. NCBI nr
Match: gi|351723661|ref|NP_001236263.1| (uncharacterized protein LOC100499804 [Glycine max])

HSP 1 Score: 179.5 bits (454), Expect = 2.5e-42
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGGRARLTEGCSFR+KGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRKKGD 86

[Close]

BLAST of Cp4.1LG17g09510 vs. NCBI nr
Match: gi|700191201|gb|KGN46405.1| (hypothetical protein Csa_6G091290 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.5e-42
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119

Query: 61  CQSVLCQPTGGRARLTEGCSFRRKGD 87
           CQ+VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 145

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g09510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS272_ARATH	4.6e-44	95.35	40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2	[more]
RS27_HORVU	2.1e-41	93.02	40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2	[more]
RS271_ARATH	4.7e-41	91.67	40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1	[more]
RS273_ARATH	6.2e-41	92.86	40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2	[more]
RS27_CHLRE	1.9e-37	86.05	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1	[more]

BLAST of Cp4.1LG17g09510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067JH67_JATCU	7.9e-43	98.84	40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1	[more]
V4W2J8_9ROSI	7.9e-43	98.84	40S ribosomal protein S27 OS=Citrus clementina GN=CICLE_v10017332mg PE=3 SV=1	[more]
A0A059CAJ6_EUCGR	7.9e-43	98.84	40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1	[more]
B9RG16_RICCO	7.9e-43	98.84	40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1	[more]
A0A0A0KTU2_CUCSA	7.9e-43	98.84	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_5G466870 PE=3 SV=1	[more]

BLAST of Cp4.1LG17g09510 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	2.6e-45	95.35	ribosomal protein S27	[more]
AT2G45710.1	2.7e-42	91.67	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	3.5e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	4.4e-37	81.40	Zinc-binding ribosomal protein family protein	[more]

BLAST of Cp4.1LG17g09510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|255543244\|ref\|XP_002512685.1\|	1.1e-42	98.84	PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]	[more]
gi\|567909151\|ref\|XP_006446889.1\|	1.1e-42	98.84	hypothetical protein CICLE_v10017335mg [Citrus clementina]	[more]
gi\|1009143419\|ref\|XP_015889256.1\|	1.9e-42	97.67	PREDICTED: 40S ribosomal protein S27-2 [Ziziphus jujuba]	[more]
gi\|351723661\|ref\|NP_001236263.1\|	2.5e-42	97.67	uncharacterized protein LOC100499804 [Glycine max]	[more]
gi\|700191201\|gb\|KGN46405.1\|	2.5e-42	97.67	hypothetical protein Csa_6G091290 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR023407	Ribosomal protein S27e, zinc-binding domain
IPR011332	Ribosomal_zn-bd
IPR000592	Ribosomal_S27e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0001510	RNA methylation
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005622	intracellular
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g09510.1	Cp4.1LG17g09510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PRODOM	PD004466		coord: 46..84 score: 1.0
IPR000592	Ribosomal protein S27e	HAMAP	MF_00371	Ribosomal_S27e	coord: 24..84 score: 16
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 1..86 score: 5.9
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 30..84 score: 2.2
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 38..70 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 30..84 score: 1.39
IPR023407	Ribosomal protein S27e, zinc-binding domain	GENE3D	G3DSA:2.20.25.100		coord: 30..84 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g09510	Cucsa.349170	Cucumber (Gy14) v1	cgycpeB0911
Cp4.1LG17g09510	CmaCh17G013930	Cucurbita maxima (Rimu)	cmacpeB389
Cp4.1LG17g09510	CmoCh17G013440	Cucurbita moschata (Rifu)	cmocpeB352
Cp4.1LG17g09510	Cla007089	Watermelon (97103) v1	cpewmB341
Cp4.1LG17g09510	Csa6G091290	Cucumber (Chinese Long) v2	cpecuB322
Cp4.1LG17g09510	MELO3C022363	Melon (DHL92) v3.5.1	cpemeB284
Cp4.1LG17g09510	ClCG06G001690	Watermelon (Charleston Gray)	cpewcgB298
Cp4.1LG17g09510	CSPI06G07300	Wild cucumber (PI 183967)	cpecpiB323
Cp4.1LG17g09510	Lsi09G017730	Bottle gourd (USVL1VR-Ls)	cpelsiB249
Cp4.1LG17g09510	MELO3C022363.2	Melon (DHL92) v3.6.1	cpemedB332
Cp4.1LG17g09510	CsaV3_6G007700	Cucumber (Chinese Long) v3	cpecucB0403
Cp4.1LG17g09510	Bhi12G002119	Wax gourd	cpewgoB0389
Cp4.1LG17g09510	CsGy6G007310	Cucumber (Gy14) v2	cgybcpeB783
Cp4.1LG17g09510	Carg03803	Silver-seed gourd	carcpeB1359
Cp4.1LG17g09510	Carg11555	Silver-seed gourd	carcpeB0022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g09510	Cucurbita pepo (Zucchini)	cpecpeB170
Cp4.1LG17g09510	Cucurbita maxima (Rimu)	cmacpeB914
Cp4.1LG17g09510	Cucurbita moschata (Rifu)	cmocpeB851