MELO3C022363 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022363
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	40S ribosomal protein S27
Location	chr11 : 30176918 .. 30177824 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTCTTCACCTTCATCGCACCGCCTTGTTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTCGCGATCCACACAGTTCCCCTTCCTTTGATCATCATGGTATACTCCAGATTTCCCTTTTTTCGTTTCATATTCGGATCCACCTAATTTTGCTTTTTTCTTTCAATCAGGTTCTTCAAAACGACATCGATTTGCTCAACCCACCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGTATGTTAACTCGTGTGAACCCTTTTTCCTTTTCTTAATCTATTATTTTCTTCGATGATGGTGATTGAACTGTTACGTGAATTCCAAAATGCAGGACGTGAAATGCCAGGGTTGCTTTAACATGTAAGTTTTTATTTTTTACATCAATTGTGGTTACTTCAATGTGAATATATGTTTTTGTTTATAAAATGAATGATGATATAAGATTATTTGAATGATGAACAGAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAATTCTTTGCCTCAGAATTGGTTTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCTCGGGTTTTCTTATACATTTTGGATGTTGATTATTCAATTTTGCTTGAGAAAGGAAGAGCATTTTGTTTGTCACCCTGTTCCAGTACAATGCAACTAAGTTAATTTTTGAAGTAATTTACATCGAACTATTTTGATTTGCTTGCCATTATTTGCATTATATGCAAAATTAAATCCTATTTTCTTTTGCTTTTA

mRNA sequence

CTCTTTCTTCACCTTCATCGCACCGCCTTGTTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTCGCGATCCACACAGTTCCCCTTCCTTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAACCCACCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAATTCTTTGCCTCAGAATTGGTTTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCTCGGGTTTTCTTATACATTTTGGATGTTGATTATTCAATTTTGCTTGAGAAAGGAAGAGCATTTTGTTTGTCACCCTGTTCCAGTACAATGCAACTAAGTTAATTTTTGAAGTAATTTACATCGAACTATTTTGATTTGCTTGCCATTATTTGCATTATATGCAAAATTAAATCCTATTTTCTTTTGCTTTTA

Coding sequence (CDS)

ATGGTTCTTCAAAACGACATCGATTTGCTCAACCCACCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA

Protein sequence

MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD*

Homology

[Close]

BLAST of MELO3C022363 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 4.2e-45
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.3e-42
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of MELO3C022363 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 170.2 bits (430), Expect = 9.7e-42
Identity = 80/86 (93.02%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 2.8e-41
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of MELO3C022363 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.5e-37
Identity = 72/86 (83.72%), Postives = 75/86 (87.21%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          C +VLC PTG   +LTEGCSFRRK D
Sbjct: 61 CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of MELO3C022363 vs. TrEMBL
Match: A0A0A0K9G0_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119

Query: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 87
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of MELO3C022363 vs. TrEMBL
Match: E5GB53_CUCME (40S ribosomal protein S27 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363 vs. TrEMBL
Match: A0A059CAJ6_EUCGR (40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.6e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363 vs. TrEMBL
Match: A0A067JH67_JATCU (40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.6e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363 vs. TrEMBL
Match: B9RG16_RICCO (40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.6e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27)

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-46
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 171.4 bits (433), Expect = 2.4e-43
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of MELO3C022363 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 168.7 bits (426), Expect = 1.6e-42
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRK 85
          CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of MELO3C022363 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-37
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQ VLCQPTGG+AKLT GCSFR+  D
Sbjct: 61 CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of MELO3C022363 vs. NCBI nr
Match: gi|700191201|gb|KGN46405.1| (hypothetical protein Csa_6G091290 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119

Query: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 87
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of MELO3C022363 vs. NCBI nr
Match: gi|659119940|ref|XP_008459925.1| (PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis])

HSP 1 Score: 181.8 bits (460), Expect = 5.1e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363 vs. NCBI nr
Match: gi|565475384|ref|XP_006295333.1| (hypothetical protein CARUB_v10024423mg [Capsella rubella])

HSP 1 Score: 181.8 bits (460), Expect = 5.1e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQTVLCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363 vs. NCBI nr
Match: gi|15233044|ref|NP_191670.1| (40S ribosomal protein S27-2 [Arabidopsis thaliana])

HSP 1 Score: 181.4 bits (459), Expect = 6.7e-43
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRAKLTEGCSFRRKGD 87
          CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

The following BLAST results are available for this feature:

BLAST of MELO3C022363 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS272_ARATH	4.2e-45	97.67	40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2	[more]
RS271_ARATH	4.3e-42	94.05	40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1	[more]
RS27_HORVU	9.7e-42	93.02	40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2	[more]
RS273_ARATH	2.8e-41	92.86	40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2	[more]
RS27_CHLRE	5.5e-37	83.72	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1	[more]

BLAST of MELO3C022363 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9G0_CUCSA	1.6e-43	100.00	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1	[more]
E5GB53_CUCME	1.6e-43	100.00	40S ribosomal protein S27 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A059CAJ6_EUCGR	3.6e-43	98.84	40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1	[more]
A0A067JH67_JATCU	3.6e-43	98.84	40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1	[more]
B9RG16_RICCO	3.6e-43	98.84	40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1	[more]

BLAST of MELO3C022363 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	2.4e-46	97.67	ribosomal protein S27	[more]
AT2G45710.1	2.4e-43	94.05	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	1.6e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	1.5e-37	82.56	Zinc-binding ribosomal protein family protein	[more]

BLAST of MELO3C022363 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191201\|gb\|KGN46405.1\|	2.3e-43	100.00	hypothetical protein Csa_6G091290 [Cucumis sativus]	[more]
gi\|659119940\|ref\|XP_008459925.1\|	2.3e-43	100.00	PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]	[more]
gi\|255543244\|ref\|XP_002512685.1\|	5.1e-43	98.84	PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]	[more]
gi\|565475384\|ref\|XP_006295333.1\|	5.1e-43	98.84	hypothetical protein CARUB_v10024423mg [Capsella rubella]	[more]
gi\|15233044\|ref\|NP_191670.1\|	6.7e-43	97.67	40S ribosomal protein S27-2 [Arabidopsis thaliana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000592	Ribosomal_S27e
IPR011332	Ribosomal_zn-bd
IPR023407	Ribosomal protein S27e, zinc-binding domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54217	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022363T1	MELO3C022363T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54217	MU54217	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PRODOM	PD004466		coord: 46..84 score: 1.0
IPR000592	Ribosomal protein S27e	HAMAP	MF_00371	Ribosomal_S27e	coord: 24..84 score: 16
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 1..86 score: 1.5
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 30..84 score: 1.8
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 38..70 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 30..84 score: 9.89
IPR023407	Ribosomal protein S27e, zinc-binding domain	GENE3D	G3DSA:2.20.25.100		coord: 30..84 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C022363	Csa6G091290	Cucumber (Chinese Long) v2	cumeB442
MELO3C022363	Cla007089	Watermelon (97103) v1	mewmB140
MELO3C022363	ClCG06G001690	Watermelon (Charleston Gray)	mewcgB124
MELO3C022363	Cla97C06G110970	Watermelon (97103) v2	mewmbB127
MELO3C022363	Bhi12G002119	Wax gourd	mewgoB099
MELO3C022363	CSPI06G07300	Wild cucumber (PI 183967)	cpimeB433
MELO3C022363	Cucsa.349170	Cucumber (Gy14) v1	cgymeB564
MELO3C022363	CmaCh17G013930	Cucurbita maxima (Rimu)	cmameB315
MELO3C022363	CmoCh17G013440	Cucurbita moschata (Rifu)	cmomeB308
MELO3C022363	Lsi09G017730	Bottle gourd (USVL1VR-Ls)	lsimeB017
MELO3C022363	Cp4.1LG17g09510	Cucurbita pepo (Zucchini)	cpemeB284
MELO3C022363	CsGy6G007310	Cucumber (Gy14) v2	cgybmeB379
MELO3C022363	Carg03803	Silver-seed gourd	carmeB0951
MELO3C022363	Carg11555	Silver-seed gourd	carmeB0010
MELO3C022363	CsaV3_6G007700	Cucumber (Chinese Long) v3	cucmeB444

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022363	Cucurbita maxima (Rimu)	cmameB817
MELO3C022363	Cucurbita moschata (Rifu)	cmomeB801
MELO3C022363	Cucurbita pepo (Zucchini)	cpemeB114