Csa6G091290 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G091290
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	40S ribosomal protein S27; contains IPR000592 (Ribosomal protein S27e), IPR011332 (Ribosomal protein, zinc-binding domain)
Location	Chr6 : 6145689 .. 6146809 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGTTATACCCTCTGCCTGATGGAAGGGTGTGTACGTAGCCCTAGGCGCTTCAAAAACCAAAGGCTGAGATTTATTTATAAAGAGATCAAACGGTCCACAATTCACAGCCGCTCCTTTATATTCATCCTAGACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCGTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGCTCCCCTTCCTTTGATCATCATGGTAAACTCCAGATTTCCCTTTTTTCGTTTCGTATTTGGATCCAACTAATTTCAGTTTCTTCTTTCAATCAGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGTATGTCAATTAGTGTGAACCCTTTTACCTTTTGTTTAATCTAATATTTTCTTCCATGATGGTGATTGAACTGTTATGTGAATTCCAAATGCAGGACGTGAAATGCCAGGGTTGCTTTAACATGTAAGATTTCGTTTTTTTTTCCCATCAATTATGTCTACTTCAGTGTGAATATATGTTTTTTTTTTCATAAAATGAATGATGATATAAGATTATTTGAATGATGAACAGAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAATTCTTTGCCTCAGAATTGGTTTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCCTCGGGTTTTCTTTATCTACATTTTGGATGTTGATTATTCAATTTTGCTTGAGAAAGAAAGAGCATTTTGGCACCCCTGTTCCAGTACAATGCAACTAAGTTAAGTTTTGTTTGAAGTAATTTACATCGAACTATTTTGATTTGCTTGCCATTATTTGCAATAGTTGTAAAATTAAATCGCATTTTCTGCTTCTTTTAGTGTTTGAAATGAAATATTGAATTGTTCTTGGTGTGCGATAGCTCAAG

mRNA sequence

ATGGACGGTTATACCCTCTGCCTGATGGAAGGGTGTCCGCTCCTTTATATTCATCCTAGACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCGTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGCTCCCCTTCCTTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATGTAA

Coding sequence (CDS)

ATGGACGGTTATACCCTCTGCCTGATGGAAGGGTGTCCGCTCCTTTATATTCATCCTAGACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCGTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGCTCCCCTTCCTTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATGTAA

Protein sequence

MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM*

Homology

[Close]

BLAST of Csa6G091290 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 7.0e-45
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 146
           CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Csa6G091290 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-42
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRK 144
           CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Csa6G091290 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-41
Identity = 80/86 (93.02%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1   MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 146
           CQTVLCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Csa6G091290 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 4.7e-41
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRK 144
           CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Csa6G091290 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 9.2e-37
Identity = 72/86 (83.72%), Postives = 75/86 (87.21%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1   MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 146
           C +VLC PTG   +LTEGCSFRRK D
Sbjct: 61  CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of Csa6G091290 vs. TrEMBL
Match: A0A0A0K9G0_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 6.8e-79
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 1   MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIM 60
           MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIM
Sbjct: 1   MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIM 60

Query: 61  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 120
           VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 61  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 120

Query: 121 QTVLCQPTGGRAKLTEGCSFRRKGD 146
           QTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 121 QTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of Csa6G091290 vs. TrEMBL
Match: B9GZ08_POPTR (40S ribosomal protein S27 (Fragment) OS=Populus trichocarpa GN=POPTR_0003s15960g PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.2e-44
Identity = 95/122 (77.87%), Postives = 101/122 (82.79%), Query Frame = 1


Query: 26  LSSPSSHRSAFVLSRTVVGVLGFAIHTAP--LPLIIMVLQNDIDLLNPPAELEKRKHKLK 85
           LS P++  S F L  + V  LGF I      +  I MVLQNDIDLLNPPAELEKRKHKLK
Sbjct: 4   LSQPATSPSPFFLVLSEVFRLGFRIPAKEKLVSRIKMVLQNDIDLLNPPAELEKRKHKLK 63

Query: 86  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK 145
           RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFR+K
Sbjct: 64  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRKK 123

[Close]

BLAST of Csa6G091290 vs. TrEMBL
Match: M0SFS6_MUSAM (40S ribosomal protein S27 OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 9.3e-44
Identity = 93/122 (76.23%), Postives = 98/122 (80.33%), Query Frame = 1


Query: 24  SPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKHKLK 83
           SPL   +S  S   ++  V GV   A   A      MVL ND+DLLNPPAELEKR+HKLK
Sbjct: 757 SPLEVLNSEHSESEVASRVPGVYVAAAAAAAQGFDKMVLPNDVDLLNPPAELEKRRHKLK 816

Query: 84  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK 143
           RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
Sbjct: 817 RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK 876

Query: 144 GD 146
           GD
Sbjct: 877 GD 878

[Close]

BLAST of Csa6G091290 vs. TrEMBL
Match: E5GB53_CUCME (40S ribosomal protein S27 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.7e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 146
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of Csa6G091290 vs. TrEMBL
Match: A0A0D2MUG4_GOSRA (40S ribosomal protein S27 OS=Gossypium raimondii GN=B456_004G062400 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.5e-43
Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 1


Query: 51  HTAPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH 110
           H  P     MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH
Sbjct: 28  HAKPSSTATMVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH 87

Query: 111 SQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 146
           SQTVVVCGNCQTVLCQPTGGRA+LTEGCSFR+KGD
Sbjct: 88  SQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 122

[Close]

BLAST of Csa6G091290 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27)

HSP 1 Score: 181.4 bits (459), Expect = 4.0e-46
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 146
           CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Csa6G091290 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 171.4 bits (433), Expect = 4.1e-43
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRK 144
           CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Csa6G091290 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 168.7 bits (426), Expect = 2.7e-42
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRK 144
           CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Csa6G091290 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-37
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 146
           CQ VLCQPTGG+AKLT GCSFR+  D
Sbjct: 61  CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of Csa6G091290 vs. NCBI nr
Match: gi|700191201|gb|KGN46405.1| (hypothetical protein Csa_6G091290 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 9.7e-79
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 1   MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIM 60
           MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIM
Sbjct: 1   MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIM 60

Query: 61  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 120
           VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 61  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 120

Query: 121 QTVLCQPTGGRAKLTEGCSFRRKGD 146
           QTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 121 QTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of Csa6G091290 vs. NCBI nr
Match: gi|566162921|ref|XP_002304634.2| (hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa])

HSP 1 Score: 185.7 bits (470), Expect = 6.0e-44
Identity = 95/122 (77.87%), Postives = 101/122 (82.79%), Query Frame = 1


Query: 26  LSSPSSHRSAFVLSRTVVGVLGFAIHTAP--LPLIIMVLQNDIDLLNPPAELEKRKHKLK 85
           LS P++  S F L  + V  LGF I      +  I MVLQNDIDLLNPPAELEKRKHKLK
Sbjct: 4   LSQPATSPSPFFLVLSEVFRLGFRIPAKEKLVSRIKMVLQNDIDLLNPPAELEKRKHKLK 63

Query: 86  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK 145
           RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFR+K
Sbjct: 64  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRKK 123

[Close]

BLAST of Csa6G091290 vs. NCBI nr
Match: gi|659119940|ref|XP_008459925.1| (PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 3.9e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 146
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of Csa6G091290 vs. NCBI nr
Match: gi|763755386|gb|KJB22717.1| (hypothetical protein B456_004G062400 [Gossypium raimondii])

HSP 1 Score: 182.6 bits (462), Expect = 5.1e-43
Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 1


Query: 51  HTAPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH 110
           H  P     MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH
Sbjct: 28  HAKPSSTATMVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH 87

Query: 111 SQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 146
           SQTVVVCGNCQTVLCQPTGGRA+LTEGCSFR+KGD
Sbjct: 88  SQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 122

[Close]

BLAST of Csa6G091290 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis])

HSP 1 Score: 181.8 bits (460), Expect = 8.6e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 146
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

The following BLAST results are available for this feature:

BLAST of Csa6G091290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS272_ARATH	7.0e-45	97.67	40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2	[more]
RS271_ARATH	7.3e-42	94.05	40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1	[more]
RS27_HORVU	1.6e-41	93.02	40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2	[more]
RS273_ARATH	4.7e-41	92.86	40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2	[more]
RS27_CHLRE	9.2e-37	83.72	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1	[more]

BLAST of Csa6G091290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9G0_CUCSA	6.8e-79	100.00	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1	[more]
B9GZ08_POPTR	4.2e-44	77.87	40S ribosomal protein S27 (Fragment) OS=Populus trichocarpa GN=POPTR_0003s15960g...	[more]
M0SFS6_MUSAM	9.3e-44	76.23	40S ribosomal protein S27 OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]
E5GB53_CUCME	2.7e-43	100.00	40S ribosomal protein S27 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0D2MUG4_GOSRA	3.5e-43	89.47	40S ribosomal protein S27 OS=Gossypium raimondii GN=B456_004G062400 PE=3 SV=1	[more]

BLAST of Csa6G091290 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	4.0e-46	97.67	ribosomal protein S27	[more]
AT2G45710.1	4.1e-43	94.05	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	2.7e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	2.6e-37	82.56	Zinc-binding ribosomal protein family protein	[more]

BLAST of Csa6G091290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191201\|gb\|KGN46405.1\|	9.7e-79	100.00	hypothetical protein Csa_6G091290 [Cucumis sativus]	[more]
gi\|566162921\|ref\|XP_002304634.2\|	6.0e-44	77.87	hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]	[more]
gi\|659119940\|ref\|XP_008459925.1\|	3.9e-43	100.00	PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]	[more]
gi\|763755386\|gb\|KJB22717.1\|	5.1e-43	89.47	hypothetical protein B456_004G062400 [Gossypium raimondii]	[more]
gi\|255543244\|ref\|XP_002512685.1\|	8.6e-43	98.84	PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000592	Ribosomal_S27e
IPR011332	Ribosomal_zn-bd
IPR023407	Ribosomal protein S27e, zinc-binding domain
IPR000592	Ribosomal_S27e
IPR023407	Ribosomal protein S27e, zinc-binding domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU099360	cucumber EST collection version 3.0	transcribed_cluster
CU164160	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G091290.2	Csa6G091290.2	mRNA
Csa6G091290.1	Csa6G091290.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU099360	CU099360	transcribed_cluster
CU164160	CU164160	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 8..104 score: 7.5
IPR023407	Ribosomal protein S27e, zinc-binding domain	GENE3D	G3DSA:2.20.25.100		coord: 89..103 score: 3.
None	No IPR available	PANTHER	PTHR11594:SF5	40S RIBOSOMAL PROTEIN S27-RELATED	coord: 8..104 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G091290	Cla007089	Watermelon (97103) v1	cuwmB537
Csa6G091290	MELO3C022363	Melon (DHL92) v3.5.1	cumeB442
Csa6G091290	ClCG06G001690	Watermelon (Charleston Gray)	cuwcgB476
Csa6G091290	Lsi09G017730	Bottle gourd (USVL1VR-Ls)	culsiB402
Csa6G091290	MELO3C022363.2	Melon (DHL92) v3.6.1	cumedB422
Csa6G091290	Cla97C06G110970	Watermelon (97103) v2	cuwmbB468
Csa6G091290	Bhi12G002119	Wax gourd	cuwgoB533
Csa6G091290	CSPI06G07300	Wild cucumber (PI 183967)	cpicuB314
Csa6G091290	Cucsa.349170	Cucumber (Gy14) v1	cgycuB490
Csa6G091290	CmaCh17G013930	Cucurbita maxima (Rimu)	cmacuB367
Csa6G091290	CmoCh08G000280	Cucurbita moschata (Rifu)	cmocuB889
Csa6G091290	CmoCh17G013440	Cucurbita moschata (Rifu)	cmocuB358
Csa6G091290	Cp4.1LG12g10080	Cucurbita pepo (Zucchini)	cpecuB142
Csa6G091290	Cp4.1LG17g09510	Cucurbita pepo (Zucchini)	cpecuB322
Csa6G091290	CsGy6G007310	Cucumber (Gy14) v2	cgybcuB282
Csa6G091290	Carg03803	Silver-seed gourd	carcuB0995
Csa6G091290	Carg11555	Silver-seed gourd	carcuB0012

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G091290	Cucurbita maxima (Rimu)	cmacuB903