ClCG06G001690 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G001690
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	40S ribosomal protein S27
Location	CG_Chr06 : 1725729 .. 1726726 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGCGAGTGCGTAGCCCTAGGCATTTCAAAAACTAAAGGCTGAGATTGATTTCTAAAGAAATCAAACGGTCCACAATTTCCAGCCGCTCCTATATATTCATCCTAGACGGCGCTTTTCTCCTCTTTCTTCACATTCATCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTCGGATTTTAGGGTTCGCGATCCAGGCACTTCCTTTCTGATCATCATGGTAAACTCCAAATTCCCCTACTGCATTTTGATATTCGGATCCAACTAATTTCACTTTCTTTCGCCCTATTGACAGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTATGTCGATTCTTGTAAATCCAAGCCTTTGTTTAATCTAATCTTTTTCTGGATGATGATGATCGAGCTGTTTTTTGAATTCTGAATGCAGGACGTGAAGTGTCAAGGTTGCTTTAACATGTAAGTTTTCATATTTTTTTTTCATCCAGTGTGGATATTTAGTTTTTTGAAATGAATGATGACAAAAAGTTATTTGAATGAAAAACAGAACCACTGTGTTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAATTCCTTGCCACAGAATTGGCTTGTAGTAGGATAAGGATGGGTGGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCTCGGGTTTTTTCTACATTTTGGTTGTTGATTAATCAATTTTGCTTGAGAAGAAGAGCATTTTGGCACCCCTGTTGCAGTACGTTAATTTTAATGTTGTCAATGAAACTAAGTTAAGTCATGTTTGAAGTAATTCACATCGAGTGTTTTGCGTGTACCCCAATTCTTTTCTAAAT

mRNA sequence

ATGGCAGCGCGACCGCTCCTATATATTCATCCTAGACGGCGCTTTTCTCCTCTTTCTTCACATTCATCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTCGGATTTTAGGGTTCGCGATCCAGGCACTTCCTTTCTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAAGGTTGCTTTAACATAACCACTGTGTTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAATTCCTTGCCACAGAATTGGCTTGTAGTAGGATAAGGATGGGTGGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCTCGGGTTTTTTCTACATTTTGGTTGTTGATTAATCAATTTTGCTTGAGAAGAAGAGCATTTTGGCACCCCTGTTGCAGTACGTTAATTTTAATGTTGTCAATGAAACTAAGTTAAGTCATGTTTGAAGTAATTCACATCGAGTGTTTTGCGTGTACCCCAATTCTTTTCTAAAT

Coding sequence (CDS)

ATGGCAGCGCGACCGCTCCTATATATTCATCCTAGACGGCGCTTTTCTCCTCTTTCTTCACATTCATCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTCGGATTTTAGGGTTCGCGATCCAGGCACTTCCTTTCTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAAGGTTGCTTTAACATAACCACTGTGTTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA

Protein sequence

MAARPLLYIHPRRRFSPLSSHSSHRPVSLANCRSDFRVRDPGTSFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Homology

[Close]

BLAST of ClCG06G001690 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 6.5e-45
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRKGD 135
           CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of ClCG06G001690 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.7e-42
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRK 133
           CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of ClCG06G001690 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-41
Identity = 80/86 (93.02%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1   MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRKGD 135
           CQTVLCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of ClCG06G001690 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 4.3e-41
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRK 133
           CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of ClCG06G001690 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.5e-37
Identity = 72/86 (83.72%), Postives = 75/86 (87.21%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1   MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRKGD 135
           C +VLC PTG   +LTEGCSFRRK D
Sbjct: 61  CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of ClCG06G001690 vs. TrEMBL
Match: A0A0A0K9G0_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.0e-52
Identity = 110/138 (79.71%), Postives = 113/138 (81.88%), Query Frame = 1


Query: 1   MAARPLLYIHPRRRFSPLSSHSSHRPVSLANCRS----DFRVRDPGTSFLIIMVLQNDID 60
           M   PLLYIHPRRR SPLSS SSHR   + +        F +       LIIMVLQNDID
Sbjct: 9   MEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLP-LIIMVLQNDID 68

Query: 61  LLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQP 120
           LLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQP
Sbjct: 69  LLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQP 128

Query: 121 TGGRAKLTEGCSFRRKGD 135
           TGGRAKLTEGCSFRRKGD
Sbjct: 129 TGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of ClCG06G001690 vs. TrEMBL
Match: R0FQY1_9BRAS (40S ribosomal protein S27 (Fragment) OS=Capsella rubella GN=CARUB_v10018269mg PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.5e-44
Identity = 90/114 (78.95%), Postives = 98/114 (85.96%), Query Frame = 1


Query: 22  SSHRP-VSLANCRSDFRVRDPGTSFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 81
           S++ P +SLA C +   +       L  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS
Sbjct: 2   SNNNPEISLAYCVAVAAISPSSLESLTKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 61

Query: 82  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 135
           FFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 62  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKARLTEGCSFRRKGD 115

[Close]

BLAST of ClCG06G001690 vs. TrEMBL
Match: E5GB53_CUCME (40S ribosomal protein S27 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.5e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRKGD 135
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of ClCG06G001690 vs. TrEMBL
Match: W9RJV2_9ROSA (40S ribosomal protein S27 OS=Morus notabilis GN=L484_005973 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.2e-43
Identity = 94/132 (71.21%), Postives = 102/132 (77.27%), Query Frame = 1


Query: 11  PRRRFSPLSSHSSHRPVSLANCRSDFRV--RDPGTSFLIIM------VLQNDIDLLNPPA 70
           PRRR +  S HS+ R  +  +    +      P +S  I        VLQNDIDLLNPPA
Sbjct: 74  PRRRLTSASQHSAARRTTTPSTGEHWACGGSPPHSSPTIFRERKNENVLQNDIDLLNPPA 133

Query: 71  ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAK 130
           ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+
Sbjct: 134 ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 193

Query: 131 LTEGCSFRRKGD 135
           LTEGCSFRRKGD
Sbjct: 194 LTEGCSFRRKGD 205

[Close]

BLAST of ClCG06G001690 vs. TrEMBL
Match: A0A067JH67_JATCU (40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.5e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRKGD 135
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of ClCG06G001690 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27)

HSP 1 Score: 181.4 bits (459), Expect = 3.6e-46
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRKGD 135
           CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of ClCG06G001690 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 171.4 bits (433), Expect = 3.8e-43
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRK 133
           CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of ClCG06G001690 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 168.7 bits (426), Expect = 2.4e-42
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRK 133
           CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of ClCG06G001690 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 152.1 bits (383), Expect = 2.4e-37
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRKGD 135
           CQ VLCQPTGG+AKLT GCSFR+  D
Sbjct: 61  CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of ClCG06G001690 vs. NCBI nr
Match: gi|700191201|gb|KGN46405.1| (hypothetical protein Csa_6G091290 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 7.1e-52
Identity = 110/138 (79.71%), Postives = 113/138 (81.88%), Query Frame = 1


Query: 1   MAARPLLYIHPRRRFSPLSSHSSHRPVSLANCRS----DFRVRDPGTSFLIIMVLQNDID 60
           M   PLLYIHPRRR SPLSS SSHR   + +        F +       LIIMVLQNDID
Sbjct: 9   MEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLP-LIIMVLQNDID 68

Query: 61  LLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQP 120
           LLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQP
Sbjct: 69  LLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQP 128

Query: 121 TGGRAKLTEGCSFRRKGD 135
           TGGRAKLTEGCSFRRKGD
Sbjct: 129 TGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of ClCG06G001690 vs. NCBI nr
Match: gi|565468388|ref|XP_006292074.1| (hypothetical protein CARUB_v10018269mg, partial [Capsella rubella])

HSP 1 Score: 184.9 bits (468), Expect = 9.3e-44
Identity = 90/114 (78.95%), Postives = 98/114 (85.96%), Query Frame = 1


Query: 22  SSHRP-VSLANCRSDFRVRDPGTSFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 81
           S++ P +SLA C +   +       L  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS
Sbjct: 2   SNNNPEISLAYCVAVAAISPSSLESLTKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 61

Query: 82  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 135
           FFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 62  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKARLTEGCSFRRKGD 115

[Close]

BLAST of ClCG06G001690 vs. NCBI nr
Match: gi|659119940|ref|XP_008459925.1| (PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 3.5e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRKGD 135
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of ClCG06G001690 vs. NCBI nr
Match: gi|703123838|ref|XP_010102910.1| (40S ribosomal protein S27-2 [Morus notabilis])

HSP 1 Score: 182.6 bits (462), Expect = 4.6e-43
Identity = 94/132 (71.21%), Postives = 102/132 (77.27%), Query Frame = 1


Query: 11  PRRRFSPLSSHSSHRPVSLANCRSDFRV--RDPGTSFLIIM------VLQNDIDLLNPPA 70
           PRRR +  S HS+ R  +  +    +      P +S  I        VLQNDIDLLNPPA
Sbjct: 74  PRRRLTSASQHSAARRTTTPSTGEHWACGGSPPHSSPTIFRERKNENVLQNDIDLLNPPA 133

Query: 71  ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAK 130
           ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+
Sbjct: 134 ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 193

Query: 131 LTEGCSFRRKGD 135
           LTEGCSFRRKGD
Sbjct: 194 LTEGCSFRRKGD 205

[Close]

BLAST of ClCG06G001690 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis])

HSP 1 Score: 181.8 bits (460), Expect = 7.9e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 49  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 109 CQTVLCQPTGGRAKLTEGCSFRRKGD 135
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

The following BLAST results are available for this feature:

BLAST of ClCG06G001690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS272_ARATH	6.5e-45	97.67	40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2	[more]
RS271_ARATH	6.7e-42	94.05	40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1	[more]
RS27_HORVU	1.5e-41	93.02	40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2	[more]
RS273_ARATH	4.3e-41	92.86	40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2	[more]
RS27_CHLRE	8.5e-37	83.72	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1	[more]

BLAST of ClCG06G001690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9G0_CUCSA	5.0e-52	79.71	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1	[more]
R0FQY1_9BRAS	6.5e-44	78.95	40S ribosomal protein S27 (Fragment) OS=Capsella rubella GN=CARUB_v10018269mg PE...	[more]
E5GB53_CUCME	2.5e-43	100.00	40S ribosomal protein S27 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
W9RJV2_9ROSA	3.2e-43	71.21	40S ribosomal protein S27 OS=Morus notabilis GN=L484_005973 PE=3 SV=1	[more]
A0A067JH67_JATCU	5.5e-43	98.84	40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1	[more]

BLAST of ClCG06G001690 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	3.6e-46	97.67	ribosomal protein S27	[more]
AT2G45710.1	3.8e-43	94.05	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	2.4e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	2.4e-37	82.56	Zinc-binding ribosomal protein family protein	[more]

BLAST of ClCG06G001690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191201\|gb\|KGN46405.1\|	7.1e-52	79.71	hypothetical protein Csa_6G091290 [Cucumis sativus]	[more]
gi\|565468388\|ref\|XP_006292074.1\|	9.3e-44	78.95	hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]	[more]
gi\|659119940\|ref\|XP_008459925.1\|	3.5e-43	100.00	PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]	[more]
gi\|703123838\|ref\|XP_010102910.1\|	4.6e-43	71.21	40S ribosomal protein S27-2 [Morus notabilis]	[more]
gi\|255543244\|ref\|XP_002512685.1\|	7.9e-43	98.84	PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000592	Ribosomal_S27e
IPR011332	Ribosomal_zn-bd
IPR023407	Ribosomal protein S27e, zinc-binding domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G001690.1	ClCG06G001690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PRODOM	PD004466		coord: 94..132 score: 1.0
IPR000592	Ribosomal protein S27e	HAMAP	MF_00371	Ribosomal_S27e	coord: 72..132 score: 16
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 33..134 score: 1.4
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 78..132 score: 5.6
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 86..118 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 78..132 score: 3.11
IPR023407	Ribosomal protein S27e, zinc-binding domain	GENE3D	G3DSA:2.20.25.100		coord: 78..132 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G001690	Csa6G091290	Cucumber (Chinese Long) v2	cuwcgB476
ClCG06G001690	MELO3C022363	Melon (DHL92) v3.5.1	mewcgB124
ClCG06G001690	Cla007089	Watermelon (97103) v1	wcgwmB345
ClCG06G001690	Cla97C06G110970	Watermelon (97103) v2	wcgwmbB273
ClCG06G001690	Bhi12G002119	Wax gourd	wcgwgoB491
ClCG06G001690	CSPI06G07300	Wild cucumber (PI 183967)	cpiwcgB503
ClCG06G001690	Cucsa.349170	Cucumber (Gy14) v1	cgywcgB595
ClCG06G001690	CmaCh17G013930	Cucurbita maxima (Rimu)	cmawcgB322
ClCG06G001690	CmoCh08G000280	Cucurbita moschata (Rifu)	cmowcgB800
ClCG06G001690	CmoCh17G013440	Cucurbita moschata (Rifu)	cmowcgB318
ClCG06G001690	Lsi09G017730	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G001690	Cp4.1LG17g09510	Cucurbita pepo (Zucchini)	cpewcgB298
ClCG06G001690	Cp4.1LG12g10080	Cucurbita pepo (Zucchini)	cpewcgB140
ClCG06G001690	CsGy6G007310	Cucumber (Gy14) v2	cgybwcgB438
ClCG06G001690	MELO3C022363.2	Melon (DHL92) v3.6.1	medwcgB119
ClCG06G001690	Carg11555	Silver-seed gourd	carwcgB0013
ClCG06G001690	Carg03803	Silver-seed gourd	carwcgB0956
ClCG06G001690	CsaV3_6G007700	Cucumber (Chinese Long) v3	cucwcgB497

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G001690	Watermelon (Charleston Gray)	wcgwcgB173
ClCG06G001690	Cucurbita maxima (Rimu)	cmawcgB805