MELO3C022363.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022363.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	40S ribosomal protein S27
Location	chr11 : 33192015 .. 33192921 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTCTTCACCTTCATCGCACCGCCTTGTTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTCGCGATCCACACAGTTCCCCTTCCTTTGATCATCATGGTATACTCCAGATTTCCCTTTTTTCGTTTCATATTCGGATCCACCTAATTTTGCTTTTTTCTTTCAATCAGGTTCTTCAAAACGACATCGATTTGCTCAACCCACCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGTATGTTAACTCGTGTGAACCCTTTTTCCTTTTCTTAATCTATTATTTTCTTCGATGATGGTGATTGAACTGTTACGTGAATTCCAAAATGCAGGACGTGAAATGCCAGGGTTGCTTTAACATGTAAGTTTTTATTTTTTACATCAATTGTGGTTACTTCAATGTGAATATATGTTTTTGTTTATAAAATGAATGATGATATAAGATTATTTGAATGATGAACAGAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAATTCTTTGCCTCAGAATTGGTTTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCTCGGGTTTTCTTATACATTTTGGATGTTGATTATTCAATTTTGCTTGAGAAAGGAAGAGCATTTTGTTTGTCACCCTGTTCCAGTACAATGCAACTAAGTTAATTTTTGAAGTAATTTACATCGAACTATTTTGATTTGCTTGCCATTATTTGCATTATATGCAAAATTAAATCCTATTTTCTTTTGCTTTTA

mRNA sequence

CTCTTTCTTCACCTTCATCGCACCGCCTTGTTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTCGCGATCCACACAGTTCCCCTTCCTTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAACCCACCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAATTCTTTGCCTCAGAATTGGTTTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCTCGGGTTTTCTTATACATTTTGGATGTTGATTATTCAATTTTGCTTGAGAAAGGAAGAGCATTTTGTTTGTCACCCTGTTCCAGTACAATGCAACTAAGTTAATTTTTGAAGTAATTTACATCGAACTATTTTGATTTGCTTGCCATTATTTGCATTATATGCAAAATTAAATCCTATTTTCTTTTGCTTTTA

Coding sequence (CDS)

CTCTTTCTTCACCTTCATCGCACCGCCTTGTTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTCGCGATCCACACAGTTCCCCTTCCTTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAACCCACCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA

Protein sequence

LFLHLHRTALFLSRTVVGVLGFAIHTVPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Homology

[Close]

BLAST of MELO3C022363.2 vs. NCBI nr
Match: KGN46405.1 (hypothetical protein Csa_6G091290 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 8.2e-56
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 6   HRTALFLSRTVVGVLGFAIHTVPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 65
           HR+A  LSRTVVGVLGFAIHT PLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS
Sbjct: 32  HRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 91

Query: 66  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 120
           FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 92  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of MELO3C022363.2 vs. NCBI nr
Match: XP_022953224.1 (uncharacterized protein LOC111455834 [Cucurbita moschata])

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 31  LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVV 90
           LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVV
Sbjct: 121 LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVV 180

Query: 91  CGNCQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 181 CGNCQTVLCQPTGGRARLTEGCSFRRKGD 209

[Close]

BLAST of MELO3C022363.2 vs. NCBI nr
Match: XP_022991567.1 (40S ribosomal protein S27-2-like [Cucurbita maxima])

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 31  LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVV 90
           LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVV
Sbjct: 61  LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVV 120

Query: 91  CGNCQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 121 CGNCQTVLCQPTGGRARLTEGCSFRRKGD 149

[Close]

BLAST of MELO3C022363.2 vs. NCBI nr
Match: XP_008459925.1 (PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo] >XP_011656784.1 PREDICTED: 40S ribosomal protein S27-2 [Cucumis sativus] >ADN33695.1 40S ribosomal protein s27 [Cucumis melo subsp. melo])

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363.2 vs. NCBI nr
Match: XP_006295333.1 (40S ribosomal protein S27-2 [Capsella rubella] >EOA28231.1 hypothetical protein CARUB_v10024423mg [Capsella rubella])

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CQTVLCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363.2 vs. TAIR10
Match: AT3G61110.1 (ribosomal protein S27)

HSP 1 Score: 180.3 bits (456), Expect = 7.2e-46
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363.2 vs. TAIR10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 170.2 bits (430), Expect = 7.5e-43
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRK 118
           CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of MELO3C022363.2 vs. TAIR10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 167.5 bits (423), Expect = 4.8e-42
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRK 118
           CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of MELO3C022363.2 vs. TAIR10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 151.0 bits (380), Expect = 4.7e-37
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CQ VLCQPTGG+AKLT GCSFR+  D
Sbjct: 61  CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of MELO3C022363.2 vs. Swiss-Prot
Match: sp|Q9M2F1|RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-44
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363.2 vs. Swiss-Prot
Match: sp|O64650|RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-41
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRK 118
           CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of MELO3C022363.2 vs. Swiss-Prot
Match: sp|Q96564|RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-41
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1   MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CQTVLCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363.2 vs. Swiss-Prot
Match: sp|Q8L953|RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 8.7e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRK 118
           CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of MELO3C022363.2 vs. Swiss-Prot
Match: sp|P47903|RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-36
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1   MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRKGD 120
           C +VLC PTG   +LTEGCSFRRK D
Sbjct: 61  CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of MELO3C022363.2 vs. TrEMBL
Match: tr|A0A0A0K9G0|A0A0A0K9G0_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.5e-56
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 6   HRTALFLSRTVVGVLGFAIHTVPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 65
           HR+A  LSRTVVGVLGFAIHT PLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS
Sbjct: 32  HRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 91

Query: 66  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 120
           FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 92  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of MELO3C022363.2 vs. TrEMBL
Match: tr|A0A1S3CCJ2|A0A1S3CCJ2_CUCME (40S ribosomal protein S27 OS=Cucumis melo OX=3656 GN=LOC103498897 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.0e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363.2 vs. TrEMBL
Match: tr|E5GB53|E5GB53_CUCME (40S ribosomal protein S27 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.0e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363.2 vs. TrEMBL
Match: tr|B9RG16|B9RG16_RICCO (40S ribosomal protein S27 OS=Ricinus communis OX=3988 GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.0e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C022363.2 vs. TrEMBL
Match: tr|A0A2N9FBT7|A0A2N9FBT7_FAGSY (40S ribosomal protein S27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12181 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.0e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 34  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 93
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 94  CQTVLCQPTGGRAKLTEGCSFRRKGD 120
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

The following BLAST results are available for this feature:

BLAST of MELO3C022363.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46405.1	8.2e-56	96.49	hypothetical protein Csa_6G091290 [Cucumis sativus]	[more]
XP_022953224.1	2.1e-43	98.88	uncharacterized protein LOC111455834 [Cucurbita moschata]	[more]
XP_022991567.1	2.1e-43	98.88	40S ribosomal protein S27-2-like [Cucurbita maxima]	[more]
XP_008459925.1	1.4e-42	100.00	PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo] >XP_011656784.1 PREDICTED:...	[more]
XP_006295333.1	3.0e-42	98.84	40S ribosomal protein S27-2 [Capsella rubella] >EOA28231.1 hypothetical protein ...	[more]

BLAST of MELO3C022363.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	7.2e-46	97.67	ribosomal protein S27	[more]
AT2G45710.1	7.5e-43	94.05	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	4.8e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	4.7e-37	82.56	Zinc-binding ribosomal protein family protein	[more]

BLAST of MELO3C022363.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M2F1\|RS272_ARATH	1.3e-44	97.67	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
sp\|O64650\|RS271_ARATH	1.3e-41	94.05	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
sp\|Q96564\|RS27_HORVU	3.0e-41	93.02	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
sp\|Q8L953\|RS273_ARATH	8.7e-41	92.86	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
sp\|P47903\|RS27_CHLRE	1.7e-36	83.72	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=...	[more]

BLAST of MELO3C022363.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9G0\|A0A0A0K9G0_CUCSA	5.5e-56	96.49	40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1	[more]
tr\|A0A1S3CCJ2\|A0A1S3CCJ2_CUCME	9.0e-43	100.00	40S ribosomal protein S27 OS=Cucumis melo OX=3656 GN=LOC103498897 PE=3 SV=1	[more]
tr\|E5GB53\|E5GB53_CUCME	9.0e-43	100.00	40S ribosomal protein S27 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|B9RG16\|B9RG16_RICCO	2.0e-42	98.84	40S ribosomal protein S27 OS=Ricinus communis OX=3988 GN=RCOM_1300070 PE=3 SV=1	[more]
tr\|A0A2N9FBT7\|A0A2N9FBT7_FAGSY	2.0e-42	98.84	40S ribosomal protein S27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12181 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR011332	Ribosomal_zn-bd
IPR000592	Ribosomal_S27e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0006412	translation
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0005622	intracellular
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022363.2.1	MELO3C022363.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 63..117 e-value: 4.3E-27 score: 93.5
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 34..118
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 71..103
IPR000592	Ribosomal protein S27e	PRODOM	PD004466		coord: 79..117 e-value: 9.0E-16 score: 198.0
IPR000592	Ribosomal protein S27e	HAMAP	MF_00371	Ribosomal_S27e	coord: 57..117 score: 16.744
None	No IPR available	GENE3D	G3DSA:2.20.25.640		coord: 38..118 e-value: 8.4E-48 score: 162.2
None	No IPR available	PANTHER	PTHR11594:SF0	40S RIBOSOMAL PROTEIN S27	coord: 34..118
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	SSF57829	Zn-binding ribosomal proteins	coord: 63..117

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C022363.2	Csa6G091290	Cucumber (Chinese Long) v2	cumedB422
MELO3C022363.2	CSPI06G07300	Wild cucumber (PI 183967)	cpimedB431
MELO3C022363.2	Cucsa.349170	Cucumber (Gy14) v1	cgymedB565
MELO3C022363.2	CmaCh17G013930	Cucurbita maxima (Rimu)	cmamedB367
MELO3C022363.2	CmoCh17G013440	Cucurbita moschata (Rifu)	cmomedB353
MELO3C022363.2	Lsi09G017730	Bottle gourd (USVL1VR-Ls)	lsimedB019
MELO3C022363.2	Cp4.1LG17g09510	Cucurbita pepo (Zucchini)	cpemedB332
MELO3C022363.2	CsGy6G007310	Cucumber (Gy14) v2	cgybmedB381
MELO3C022363.2	Cla007089	Watermelon (97103) v1	medwmB138
MELO3C022363.2	ClCG06G001690	Watermelon (Charleston Gray)	medwcgB119
MELO3C022363.2	Cla97C06G110970	Watermelon (97103) v2	medwmbB118
MELO3C022363.2	Bhi12G002119	Wax gourd	medwgoB100
MELO3C022363.2	Carg03803	Silver-seed gourd	carmedB0957
MELO3C022363.2	Carg11555	Silver-seed gourd	carmedB0011
MELO3C022363.2	CsaV3_6G007700	Cucumber (Chinese Long) v3	cucmedB435

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022363.2	Cucurbita maxima (Rimu)	cmamedB915
MELO3C022363.2	Cucurbita moschata (Rifu)	cmomedB904
MELO3C022363.2	Cucurbita pepo (Zucchini)	cpemedB140
MELO3C022363.2	Watermelon (97103) v1	medwmB137